ISMtsp10
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010511 | ND | Methylobacterium sp. | Methylobacterium sp. 4-46 |
DNA section
IS Length : 1778 bp
Ends
IR Length : 24/25
IRL : GATATTGGTGGCGAATTCGGCTCGGTTCCTGCGATGAGAGGACGACCGGC
IRR : GATATTGGTGGTGAATTCGGCTCGGCACAGTCAGGCTGCAGGCGAGTGCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCTCTTGCTC | ACTTT | GCGTGGATCA | 5 |
TGCTCACTGT | AAAGTGCGGA | 0 | |
CCCGCACTTT | AAAGTGCGGG | 0 |
DNA sequence
GATATTGGTGGCGAATTCGGCTCGGTTCCTGCGATGAGAGGACGACCGGCGCGGCGCGTTGAGCGACGATGTGGCCCCACGCCAATCAGGAGGGGGGCAT
GTCGCTCGACGTGAGACGGACGTATGTCGTGCCTGATCAGACGGCGCAGGTGGCGCGGGCGATCTTTCCGAGCGGCAATCCGGTCATGCGCCTCTCCGAC
GACCTGCATCGCGTCATGGAGGATCACGACTTCGCCGACCTGTTCCCGGCGCGGGGACGACCCGCAGAGGCGCTGGTCCGGCTCGCCCTGGCGACCCTGC
TGCAGTTCATGGAAGGGCTGACCGATAGGCAAGCCGCCGACGCGGTCCGCACGCGGATCGACTGGAAGTACCTGCTGTGCCTGGAACTGGCTGACGCTGG
TTTCGACCACACCGTCTTGAGCGAGTTCCGCACGCGCCTTCTCGCGCATGGGGCGGAAAGTCGGCTCTTCGACGCGACGCTCGCACTGGCACGAGGGCGC
GGGCTCCTGAAAGGCGGTGGACGTCAGCGCAGCGACTCCACGCACGTCCTTGAAGCGATGCGGACCCTCAGCCGGCTCGAAGTTGTCGGGGAAACACTGC
GCCACGCGCTGAACGAACTGGCGACGATCGCGCCCGACTGGCTCCGCACGTGCACGACCCCGACCTGGGTCGAACGCTACGGGCTCCGAGCGAGCGAGTT
CCGGCTGCCCAAAAGCCAGGCAGGACGGCAGGCGTGGGCGGTGCAGACTGGGATCGATGGGTTCGCCTTGCTGGCTCTCGCCCCACCCGTCCTGCGTGAC
GCTGCGGCCCTTGAGACCCTGCGACGGGTCTGGGTGCAGAACTTCCTCCGCGAGGACGGGCCGGAGGGCACCCGTGTCGCATGGCGGACGAACCATCAGC
TGCCACCATCGGGTCGATACATCGGCTCGCCGTATGACGGCGAGGCGCGCTCCGCGAGCAAGGGCACGACGGTGTGGAGCGGCTATAAAGTGCATCTGAC
CGAGACGTGCGACGATGACGCCCCGAACCTGATCACCCACGTCGAGACGACGACCGCCGCGGTCTCGGATGACGCGACGACCTCGACCATCCACGCGACG
CTTGCTGCACGGGATCTGCTGCCCAAGATCCACATCGCCGACACCGGCTTCGTGAACGCGGCGCTGTTCGTTGACGCCCAGGCGCGCCACGGGATCGATC
TGGTCGGCCCGACGCGGGGTGACCGGCAGTGGCAGGCCCAGGCCGGTGACGGGTTCGCCGCACGGGACTTCGCCATTGACTTCGCTCGGCGGCGGGCGAC
GTGTCCGGGCGGGAAGGAAAGCCAGAGCTGGACGCCCACGCTCGTCCACGGCACGACACCGGTGATCAAGATCAAGTTCGCGGTCCGCGATTGCCGGGAC
TGCTCGCTGCGGCCGGACTGCACACGCTCGCGCTCGTCCCGCCGGGCGATCACGATCCGCCCTGAAGCCCAACACGAGGCGTTGCGGGTCAGGCGGGAGC
GGGAGAAGACCGCCGACTTCGCAGCCGAGTACGCCCGACGAGCCGGCGTCGAGGGCACGATTGCACAAGGCGTGCGGTCATCTCGGCTGCGGCGAACGCC
CGACTTCGGACACGCAAAGACGCACCTGGCTCATCTGATGACGGCAGCGGCGATGAACTTGGTGCGACTACTGCGATGGCTCGCGGACGAACCGAAGGCT
CGAACACCAAACTCATCCTTTGCACAGCTGCACTCGCCTGCAGCCTGACTGTGCCGAGCCGAATTCACCACCAATATC
GTCGCTCGACGTGAGACGGACGTATGTCGTGCCTGATCAGACGGCGCAGGTGGCGCGGGCGATCTTTCCGAGCGGCAATCCGGTCATGCGCCTCTCCGAC
GACCTGCATCGCGTCATGGAGGATCACGACTTCGCCGACCTGTTCCCGGCGCGGGGACGACCCGCAGAGGCGCTGGTCCGGCTCGCCCTGGCGACCCTGC
TGCAGTTCATGGAAGGGCTGACCGATAGGCAAGCCGCCGACGCGGTCCGCACGCGGATCGACTGGAAGTACCTGCTGTGCCTGGAACTGGCTGACGCTGG
TTTCGACCACACCGTCTTGAGCGAGTTCCGCACGCGCCTTCTCGCGCATGGGGCGGAAAGTCGGCTCTTCGACGCGACGCTCGCACTGGCACGAGGGCGC
GGGCTCCTGAAAGGCGGTGGACGTCAGCGCAGCGACTCCACGCACGTCCTTGAAGCGATGCGGACCCTCAGCCGGCTCGAAGTTGTCGGGGAAACACTGC
GCCACGCGCTGAACGAACTGGCGACGATCGCGCCCGACTGGCTCCGCACGTGCACGACCCCGACCTGGGTCGAACGCTACGGGCTCCGAGCGAGCGAGTT
CCGGCTGCCCAAAAGCCAGGCAGGACGGCAGGCGTGGGCGGTGCAGACTGGGATCGATGGGTTCGCCTTGCTGGCTCTCGCCCCACCCGTCCTGCGTGAC
GCTGCGGCCCTTGAGACCCTGCGACGGGTCTGGGTGCAGAACTTCCTCCGCGAGGACGGGCCGGAGGGCACCCGTGTCGCATGGCGGACGAACCATCAGC
TGCCACCATCGGGTCGATACATCGGCTCGCCGTATGACGGCGAGGCGCGCTCCGCGAGCAAGGGCACGACGGTGTGGAGCGGCTATAAAGTGCATCTGAC
CGAGACGTGCGACGATGACGCCCCGAACCTGATCACCCACGTCGAGACGACGACCGCCGCGGTCTCGGATGACGCGACGACCTCGACCATCCACGCGACG
CTTGCTGCACGGGATCTGCTGCCCAAGATCCACATCGCCGACACCGGCTTCGTGAACGCGGCGCTGTTCGTTGACGCCCAGGCGCGCCACGGGATCGATC
TGGTCGGCCCGACGCGGGGTGACCGGCAGTGGCAGGCCCAGGCCGGTGACGGGTTCGCCGCACGGGACTTCGCCATTGACTTCGCTCGGCGGCGGGCGAC
GTGTCCGGGCGGGAAGGAAAGCCAGAGCTGGACGCCCACGCTCGTCCACGGCACGACACCGGTGATCAAGATCAAGTTCGCGGTCCGCGATTGCCGGGAC
TGCTCGCTGCGGCCGGACTGCACACGCTCGCGCTCGTCCCGCCGGGCGATCACGATCCGCCCTGAAGCCCAACACGAGGCGTTGCGGGTCAGGCGGGAGC
GGGAGAAGACCGCCGACTTCGCAGCCGAGTACGCCCGACGAGCCGGCGTCGAGGGCACGATTGCACAAGGCGTGCGGTCATCTCGGCTGCGGCGAACGCC
CGACTTCGGACACGCAAAGACGCACCTGGCTCATCTGATGACGGCAGCGGCGATGAACTTGGTGCGACTACTGCGATGGCTCGCGGACGAACCGAAGGCT
CGAACACCAAACTCATCCTTTGCACAGCTGCACTCGCCTGCAGCCTGACTGTGCCGAGCCGAATTCACCACCAATATC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1650 bp | 549 aa | 99 | 1748 | + | No |
Chemistry : DDE
ORF sequence :
MSLDVRRTYVVPDQTAQVARAIFPSGNPVMRLSDDLHRVMEDHDFADLFPARGRPAEALVRLALATLLQFMEGLTDRQAADAVRTRIDWKYLLCLELADA
GFDHTVLSEFRTRLLAHGAESRLFDATLALARGRGLLKGGGRQRSDSTHVLEAMRTLSRLEVVGETLRHALNELATIAPDWLRTCTTPTWVERYGLRASE
FRLPKSQAGRQAWAVQTGIDGFALLALAPPVLRDAAALETLRRVWVQNFLREDGPEGTRVAWRTNHQLPPSGRYIGSPYDGEARSASKGTTVWSGYKVHL
TETCDDDAPNLITHVETTTAAVSDDATTSTIHATLAARDLLPKIHIADTGFVNAALFVDAQARHGIDLVGPTRGDRQWQAQAGDGFAARDFAIDFARRRA
TCPGGKESQSWTPTLVHGTTPVIKIKFAVRDCRDCSLRPDCTRSRSSRRAITIRPEAQHEALRVRREREKTADFAAEYARRAGVEGTIAQGVRSSRLRRT
PDFGHAKTHLAHLMTAAAMNLVRLLRWLADEPKARTPNSSFAQLHSPAA
GFDHTVLSEFRTRLLAHGAESRLFDATLALARGRGLLKGGGRQRSDSTHVLEAMRTLSRLEVVGETLRHALNELATIAPDWLRTCTTPTWVERYGLRASE
FRLPKSQAGRQAWAVQTGIDGFALLALAPPVLRDAAALETLRRVWVQNFLREDGPEGTRVAWRTNHQLPPSGRYIGSPYDGEARSASKGTTVWSGYKVHL
TETCDDDAPNLITHVETTTAAVSDDATTSTIHATLAARDLLPKIHIADTGFVNAALFVDAQARHGIDLVGPTRGDRQWQAQAGDGFAARDFAIDFARRRA
TCPGGKESQSWTPTLVHGTTPVIKIKFAVRDCRDCSLRPDCTRSRSSRRAITIRPEAQHEALRVRREREKTADFAAEYARRAGVEGTIAQGVRSSRLRRT
PDFGHAKTHLAHLMTAAAMNLVRLLRWLADEPKARTPNSSFAQLHSPAA
Blast result :
Comments
ISMtsp10 is 62% aa similar to ISAcma46.
This IS is disrupted by ISMtsp9, and reconstructed in silico.
This IS is disrupted by ISMtsp9, and reconstructed in silico.
References
1] ISfinder annotation (2010)