ISMtsp10

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010511 ND Methylobacterium sp.
Methylobacterium sp. 4-46
DNA section
IS Length : 1778 bp

Ends


IR Length : 24/25

IRL : GATATTGGTGGCGAATTCGGCTCGGTTCCTGCGATGAGAGGACGACCGGC
IRR : GATATTGGTGGTGAATTCGGCTCGGCACAGTCAGGCTGCAGGCGAGTGCA

Insertion site


Left flankDirect repeatRight flankDR Length
GCTCTTGCTCACTTTGCGTGGATCA5
TGCTCACTGTAAAGTGCGGA0
CCCGCACTTTAAAGTGCGGG0

DNA sequence

GATATTGGTGGCGAATTCGGCTCGGTTCCTGCGATGAGAGGACGACCGGCGCGGCGCGTTGAGCGACGATGTGGCCCCACGCCAATCAGGAGGGGGGCAT
GTCGCTCGACGTGAGACGGACGTATGTCGTGCCTGATCAGACGGCGCAGGTGGCGCGGGCGATCTTTCCGAGCGGCAATCCGGTCATGCGCCTCTCCGAC
GACCTGCATCGCGTCATGGAGGATCACGACTTCGCCGACCTGTTCCCGGCGCGGGGACGACCCGCAGAGGCGCTGGTCCGGCTCGCCCTGGCGACCCTGC
TGCAGTTCATGGAAGGGCTGACCGATAGGCAAGCCGCCGACGCGGTCCGCACGCGGATCGACTGGAAGTACCTGCTGTGCCTGGAACTGGCTGACGCTGG
TTTCGACCACACCGTCTTGAGCGAGTTCCGCACGCGCCTTCTCGCGCATGGGGCGGAAAGTCGGCTCTTCGACGCGACGCTCGCACTGGCACGAGGGCGC
GGGCTCCTGAAAGGCGGTGGACGTCAGCGCAGCGACTCCACGCACGTCCTTGAAGCGATGCGGACCCTCAGCCGGCTCGAAGTTGTCGGGGAAACACTGC
GCCACGCGCTGAACGAACTGGCGACGATCGCGCCCGACTGGCTCCGCACGTGCACGACCCCGACCTGGGTCGAACGCTACGGGCTCCGAGCGAGCGAGTT
CCGGCTGCCCAAAAGCCAGGCAGGACGGCAGGCGTGGGCGGTGCAGACTGGGATCGATGGGTTCGCCTTGCTGGCTCTCGCCCCACCCGTCCTGCGTGAC
GCTGCGGCCCTTGAGACCCTGCGACGGGTCTGGGTGCAGAACTTCCTCCGCGAGGACGGGCCGGAGGGCACCCGTGTCGCATGGCGGACGAACCATCAGC
TGCCACCATCGGGTCGATACATCGGCTCGCCGTATGACGGCGAGGCGCGCTCCGCGAGCAAGGGCACGACGGTGTGGAGCGGCTATAAAGTGCATCTGAC
CGAGACGTGCGACGATGACGCCCCGAACCTGATCACCCACGTCGAGACGACGACCGCCGCGGTCTCGGATGACGCGACGACCTCGACCATCCACGCGACG
CTTGCTGCACGGGATCTGCTGCCCAAGATCCACATCGCCGACACCGGCTTCGTGAACGCGGCGCTGTTCGTTGACGCCCAGGCGCGCCACGGGATCGATC
TGGTCGGCCCGACGCGGGGTGACCGGCAGTGGCAGGCCCAGGCCGGTGACGGGTTCGCCGCACGGGACTTCGCCATTGACTTCGCTCGGCGGCGGGCGAC
GTGTCCGGGCGGGAAGGAAAGCCAGAGCTGGACGCCCACGCTCGTCCACGGCACGACACCGGTGATCAAGATCAAGTTCGCGGTCCGCGATTGCCGGGAC
TGCTCGCTGCGGCCGGACTGCACACGCTCGCGCTCGTCCCGCCGGGCGATCACGATCCGCCCTGAAGCCCAACACGAGGCGTTGCGGGTCAGGCGGGAGC
GGGAGAAGACCGCCGACTTCGCAGCCGAGTACGCCCGACGAGCCGGCGTCGAGGGCACGATTGCACAAGGCGTGCGGTCATCTCGGCTGCGGCGAACGCC
CGACTTCGGACACGCAAAGACGCACCTGGCTCATCTGATGACGGCAGCGGCGATGAACTTGGTGCGACTACTGCGATGGCTCGCGGACGAACCGAAGGCT
CGAACACCAAACTCATCCTTTGCACAGCTGCACTCGCCTGCAGCCTGACTGTGCCGAGCCGAATTCACCACCAATATC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1650 bp549 aa991748+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSLDVRRTYVVPDQTAQVARAIFPSGNPVMRLSDDLHRVMEDHDFADLFPARGRPAEALVRLALATLLQFMEGLTDRQAADAVRTRIDWKYLLCLELADA
GFDHTVLSEFRTRLLAHGAESRLFDATLALARGRGLLKGGGRQRSDSTHVLEAMRTLSRLEVVGETLRHALNELATIAPDWLRTCTTPTWVERYGLRASE
FRLPKSQAGRQAWAVQTGIDGFALLALAPPVLRDAAALETLRRVWVQNFLREDGPEGTRVAWRTNHQLPPSGRYIGSPYDGEARSASKGTTVWSGYKVHL
TETCDDDAPNLITHVETTTAAVSDDATTSTIHATLAARDLLPKIHIADTGFVNAALFVDAQARHGIDLVGPTRGDRQWQAQAGDGFAARDFAIDFARRRA
TCPGGKESQSWTPTLVHGTTPVIKIKFAVRDCRDCSLRPDCTRSRSSRRAITIRPEAQHEALRVRREREKTADFAAEYARRAGVEGTIAQGVRSSRLRRT
PDFGHAKTHLAHLMTAAAMNLVRLLRWLADEPKARTPNSSFAQLHSPAA

 

Blast result :
Comments
ISMtsp10 is 62% aa similar to ISAcma46.
This IS is disrupted by ISMtsp9, and reconstructed in silico.
References
1] ISfinder annotation (2010)