ISMtsp9
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010511 | ND | Methylobacterium sp. | Methylobacterium sp. 4-46 |
DNA section
IS Length : 1456 bp
Ends
Left end : CTGTACCTGACGACGAGCCGTGCTTCAGTGCGGCTTGGGCGTCCGGCGATCTGAGGTATTTCCGGTCCGACGCAGGCGTAGCTCAGCAACGCCTGTGCCG
Right end : AACCCGACGCTGGAACGCCTCTCGGGCGGGGCCAGCCATCCTGTTTCTAAGAGGTCAAACCGTCGTATCGCCTCCCAAGGCTTGACCCGCGATACAGTCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCAGGTACTT | CCAGTCGATC | 0 |
DNA sequence
CTGTACCTGACGACGAGCCGTGCTTCAGTGCGGCTTGGGCGTCCGGCGATCTGAGGTATTTCCGGTCCGACGCAGGCGTAGCTCAGCAACGCCTGTGCCG
CGATCGCCGATTGGCACGATCCCGGATGCCCTGTCGCGTTCCTCCGAACAGTCGCTGGGGCTCCGCTCGCGCGGACGCCCGCGTACAGGACAGGATCCGC
CCATGCTCAGTCCCGGACTGGTGGCCGGCATCGATGCCGGCAAGCACTTCCTCGATCTCGGCTTCCATCCTGCCGGCAAGCCGATGCGCTGCGACAACAA
TCCGGCCGGCATCAAGCGCCTGATCGCGGCCTTGCGGCAACGAGGCGTCATTCGCGTCGCCCTGGAGGCGATCGGTCCTTACGCTCAGCCTCTCGTGCAT
GCCCTCGTTGCCGCCGGCTTCACGGTGGCGCTGATTGATCCGCGACGGGTCAAGGCCTTCCGCACTGCCGAGGGGCTGATCGCCAAGACCGACCGGCTGG
ACGCGGCGCTGATCGCCCGCTTTGCTCATCGCATGAGCGAGTCTCTGCGCCCGGTTCCCACGGCCGACCAGGTGACCCTCAAGGCTCTGTCGACGCGCCG
GCGCCAGCTCACCGAGCTGATCGCCATGGAGAAGACCCGGCTGGCCCAGGCCCTCGATCCGATGATCGTCGACAGCCACCGGGCCGTCCTCGAGGCCCTG
ACGCGGACTTGTGCCGAGGTTGAAGCCGAGCTCGACCGGCGCATCGCTGCCGACCCGGCCTTGGCCCGTAAGCGCATCATCCTCACCTCGATCCCGGGGA
TCGGCCGGCGCATCGCCGGCGTGCTGATCACCGATATGCCCGAGCTTGGACGGCTCGACCGCAAGGCCGCCGCGAGCCTGGCTGGCATGGCTCCTCATCC
CAGCCAGAGCGGGGCCCATCCCGGCCGCCATGCCATCGCTGGCGGCCGGCCGTGCCTGCGGACTGCCTTCTACATGGCCGGCATGGTCGCCGCACGCGCC
TGTCCCGCTTTCCGAAAACCCTATCGCGCCATGAGAGACGCCGGCAAACCGGCCAAGCTCGCCATCGTGGCCACAGGGCGACGCGTCGTGACCCTGGCGA
ATGCTCTCCTCCGCGCCAACAAAACTTTCGACCAGAGCGACCTGGTGACTTGTCAGGCGACGTCCGGGACGGCTCCCCTGGCGACAACGGGGCAACACCA
GCATGCGCTGGCGTGATCGCTGGCTTGATCGGAGGGTCGATGCCTCGCATCGACCCTCCGCCTCATGACCGTTCGCCGGCGGGGGCGGGTCAAGGCCTTG
TCGCGCAACGCGCGATGGCGCGGAGCGCCAGCCTTGACGCGCACACGACGGTGAACAACCCGACGCTGGAACGCCTCTCGGGCGGGGCCAGCCATCCTGT
TTCTAAGAGGTCAAACCGTCGTATCGCCTCCCAAGGCTTGACCCGCGATACAGTCG
CGATCGCCGATTGGCACGATCCCGGATGCCCTGTCGCGTTCCTCCGAACAGTCGCTGGGGCTCCGCTCGCGCGGACGCCCGCGTACAGGACAGGATCCGC
CCATGCTCAGTCCCGGACTGGTGGCCGGCATCGATGCCGGCAAGCACTTCCTCGATCTCGGCTTCCATCCTGCCGGCAAGCCGATGCGCTGCGACAACAA
TCCGGCCGGCATCAAGCGCCTGATCGCGGCCTTGCGGCAACGAGGCGTCATTCGCGTCGCCCTGGAGGCGATCGGTCCTTACGCTCAGCCTCTCGTGCAT
GCCCTCGTTGCCGCCGGCTTCACGGTGGCGCTGATTGATCCGCGACGGGTCAAGGCCTTCCGCACTGCCGAGGGGCTGATCGCCAAGACCGACCGGCTGG
ACGCGGCGCTGATCGCCCGCTTTGCTCATCGCATGAGCGAGTCTCTGCGCCCGGTTCCCACGGCCGACCAGGTGACCCTCAAGGCTCTGTCGACGCGCCG
GCGCCAGCTCACCGAGCTGATCGCCATGGAGAAGACCCGGCTGGCCCAGGCCCTCGATCCGATGATCGTCGACAGCCACCGGGCCGTCCTCGAGGCCCTG
ACGCGGACTTGTGCCGAGGTTGAAGCCGAGCTCGACCGGCGCATCGCTGCCGACCCGGCCTTGGCCCGTAAGCGCATCATCCTCACCTCGATCCCGGGGA
TCGGCCGGCGCATCGCCGGCGTGCTGATCACCGATATGCCCGAGCTTGGACGGCTCGACCGCAAGGCCGCCGCGAGCCTGGCTGGCATGGCTCCTCATCC
CAGCCAGAGCGGGGCCCATCCCGGCCGCCATGCCATCGCTGGCGGCCGGCCGTGCCTGCGGACTGCCTTCTACATGGCCGGCATGGTCGCCGCACGCGCC
TGTCCCGCTTTCCGAAAACCCTATCGCGCCATGAGAGACGCCGGCAAACCGGCCAAGCTCGCCATCGTGGCCACAGGGCGACGCGTCGTGACCCTGGCGA
ATGCTCTCCTCCGCGCCAACAAAACTTTCGACCAGAGCGACCTGGTGACTTGTCAGGCGACGTCCGGGACGGCTCCCCTGGCGACAACGGGGCAACACCA
GCATGCGCTGGCGTGATCGCTGGCTTGATCGGAGGGTCGATGCCTCGCATCGACCCTCCGCCTCATGACCGTTCGCCGGCGGGGGCGGGTCAAGGCCTTG
TCGCGCAACGCGCGATGGCGCGGAGCGCCAGCCTTGACGCGCACACGACGGTGAACAACCCGACGCTGGAACGCCTCTCGGGCGGGGCCAGCCATCCTGT
TTCTAAGAGGTCAAACCGTCGTATCGCCTCCCAAGGCTTGACCCGCGATACAGTCG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1014 bp | 337 aa | 203 | 1216 | + | No |
Chemistry : DEDD
ORF sequence :
MLSPGLVAGIDAGKHFLDLGFHPAGKPMRCDNNPAGIKRLIAALRQRGVIRVALEAIGPYAQPLVHALVAAGFTVALIDPRRVKAFRTAEGLIAKTDRLD
AALIARFAHRMSESLRPVPTADQVTLKALSTRRRQLTELIAMEKTRLAQALDPMIVDSHRAVLEALTRTCAEVEAELDRRIAADPALARKRIILTSIPGI
GRRIAGVLITDMPELGRLDRKAAASLAGMAPHPSQSGAHPGRHAIAGGRPCLRTAFYMAGMVAARACPAFRKPYRAMRDAGKPAKLAIVATGRRVVTLAN
ALLRANKTFDQSDLVTCQATSGTAPLATTGQHQHALA
AALIARFAHRMSESLRPVPTADQVTLKALSTRRRQLTELIAMEKTRLAQALDPMIVDSHRAVLEALTRTCAEVEAELDRRIAADPALARKRIILTSIPGI
GRRIAGVLITDMPELGRLDRKAAASLAGMAPHPSQSGAHPGRHAIAGGRPCLRTAFYMAGMVAARACPAFRKPYRAMRDAGKPAKLAIVATGRRVVTLAN
ALLRANKTFDQSDLVTCQATSGTAPLATTGQHQHALA
Blast result :
Comments
ISMtsp9 is 53% aa similar to ISGme8.
ISMtsp9 is inserted in another insertion sequence of the IS1182 family.
ISMtsp9 is inserted in another insertion sequence of the IS1182 family.
References
1] Ming-Chun Lee and David Robinson, direct submission.