ISOt6
- Family IS5
- Group ISL2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AM494475 | ND | Orientia tsutsugamushi | Orientia tsutsugamushi Boryong |
DNA section
IS Length : 908 bp
Ends
IR Length : 15/17
IRL : AGACTTCTTTCGAAACTATACAATGATGTAAAATGGTGTTATAAAAATCT
IRR : AGGCCTCTTTCGAAACTGGTTAAGGTAGTTCAAAATTATAAATGCCAGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTATCTCATT | AATATCAATC | 0 | |
AAAAAGAGAT | AAT | AGCATCATAA | 3 |
TTATTTAGAC | AAT | ACATAGCATC | 3 |
DNA sequence
AGACTTCTTTCGAAACTATACAATGATGTAAAATGGTGTTATAAAAATCTGATTTGAAGTAATAATGAAATTAGATCAGATTAAAGAGTTAAAGGATGAA
AAATTTCGTCGATTAACAGGAGTAAGGAAGGGAACATTCTCAAAGATGGTGGATATTTTGAGGAAAGCTGATGGTGTTAAGAAATCAAAAGGAGGGCGTA
AAAATAAGCTCAATTTGGAGGAACAGTTATTGATGGCCTTAGAATACCTTAGAGAATACCGTACTTATTTTCATATAGGTCAGAACTATGGGATTAGTGA
AAGTTCAGCATATAAAGCTGTAAAATGGGTAGAAGACACCTTAGTTAAACACCCAAACTTTGCTCTTCCAGGTCGTAAAGCTCTAATGAATAGCGATATG
AATTATGAAGTAGTCTTGATTGATGCTACTGAGAGTCCAATAGAAAGACCCAAAAAAAAACAAAAATTCTATTATTCAGGAAAGAAGAAAAGGCATACAC
TAAAGACTCAAATAGTGGTAGACAAGAAAACACACCAAGTAATATGTACAGATTTTTCTAACGGTAAAAAACATGACTTTAGATTATTTAAGGAATCCAA
AATTCTTATCCATCCTAAGATTAAAGCGATTACTGATACAGGATATCAAGGTATACAAAAAATTCACAATAATTCTGCATTACCAAAGAAGAAAAGCAAG
AAAAATCCTTTAACTAAAAATGATAAAAAGAATAATCGTAGGTTAGCAGGAGAAAGAGTTGTCAATGAAAACTTTATTGGTATGCTAAAACGGTTCAAAA
TTATTGCTGACAAATATCGAAATAGACGTAAAAGATTTGGTCTTAGATTTAATTTGATCTCTGGCATTTATAATTTTGAACTACCTTAACCAGTTTCGAA
AGAGGCCT
AAATTTCGTCGATTAACAGGAGTAAGGAAGGGAACATTCTCAAAGATGGTGGATATTTTGAGGAAAGCTGATGGTGTTAAGAAATCAAAAGGAGGGCGTA
AAAATAAGCTCAATTTGGAGGAACAGTTATTGATGGCCTTAGAATACCTTAGAGAATACCGTACTTATTTTCATATAGGTCAGAACTATGGGATTAGTGA
AAGTTCAGCATATAAAGCTGTAAAATGGGTAGAAGACACCTTAGTTAAACACCCAAACTTTGCTCTTCCAGGTCGTAAAGCTCTAATGAATAGCGATATG
AATTATGAAGTAGTCTTGATTGATGCTACTGAGAGTCCAATAGAAAGACCCAAAAAAAAACAAAAATTCTATTATTCAGGAAAGAAGAAAAGGCATACAC
TAAAGACTCAAATAGTGGTAGACAAGAAAACACACCAAGTAATATGTACAGATTTTTCTAACGGTAAAAAACATGACTTTAGATTATTTAAGGAATCCAA
AATTCTTATCCATCCTAAGATTAAAGCGATTACTGATACAGGATATCAAGGTATACAAAAAATTCACAATAATTCTGCATTACCAAAGAAGAAAAGCAAG
AAAAATCCTTTAACTAAAAATGATAAAAAGAATAATCGTAGGTTAGCAGGAGAAAGAGTTGTCAATGAAAACTTTATTGGTATGCTAAAACGGTTCAAAA
TTATTGCTGACAAATATCGAAATAGACGTAAAAGATTTGGTCTTAGATTTAATTTGATCTCTGGCATTTATAATTTTGAACTACCTTAACCAGTTTCGAA
AGAGGCCT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
825 bp | 274 aa | 65 | 889 | + | No |
Chemistry : DDE
ORF sequence :
MKLDQIKELKDEKFRRLTGVRKGTFSKMVDILRKADGVKKSKGGRKNKLNLEEQLLMALEYLREYRTYFHIGQNYGISESSAYKAVKWVEDTLVKHPNFA
LPGRKALMNSDMNYEVVLIDATESPIERPKKKQKFYYSGKKKRHTLKTQIVVDKKTHQVICTDFSNGKKHDFRLFKESKILIHPKIKAITDTGYQGIQKI
HNNSALPKKKSKKNPLTKNDKKNNRRLAGERVVNENFIGMLKRFKIIADKYRNRRKRFGLRFNLISGIYNFELP
LPGRKALMNSDMNYEVVLIDATESPIERPKKKQKFYYSGKKKRHTLKTQIVVDKKTHQVICTDFSNGKKHDFRLFKESKILIHPKIKAITDTGYQGIQKI
HNNSALPKKKSKKNPLTKNDKKNNRRLAGERVVNENFIGMLKRFKIIADKYRNRRKRFGLRFNLISGIYNFELP
Blast result :
Comments
ISOt6 is 87% aa similar to ISCaa2.
References
1] ISfinder annotation (2010).
2] Cho,N.H., Kim,H.R., Lee,J.H., Kim,S.Y., Kim,J., Cha,S., Kim,S.Y., Darby,A.C., Fuxelius,H.H., Yin,J., Kim,J.H., Kim,J., Lee,S.J., Koh,Y.S., Jang,W.J., Park,K.H., Andersson,S.G., Choi,M.S. and Kim,I.S. (2007) Proc. Natl. Acad. Sci. U.S.A. 104 (19), 7981-7986
3]Cho,N.H. (2007) Direct submission GenBank.
2] Cho,N.H., Kim,H.R., Lee,J.H., Kim,S.Y., Kim,J., Cha,S., Kim,S.Y., Darby,A.C., Fuxelius,H.H., Yin,J., Kim,J.H., Kim,J., Lee,S.J., Koh,Y.S., Jang,W.J., Park,K.H., Andersson,S.G., Choi,M.S. and Kim,I.S. (2007) Proc. Natl. Acad. Sci. U.S.A. 104 (19), 7981-7986
3]Cho,N.H. (2007) Direct submission GenBank.