ISMno22
- Family IS110
- Group IS1111
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_011894 | ND | Methylobacterium nodulans | Methylobacterium nodulans ORS 2060 Methylobacterium nodulans ORS 2060 pMNOD01 Methylobacterium nodulans ORS 2060 pMNOD02 |
DNA section
IS Length : 1426 bp
Ends
IR Length : 15/24
IRL : gatggggTGATTGGGGTCTTAGCCGAGGGTGGCTGCTCCGTTCGGGATGT
IRR : ----ctcTGATTGGGGTCGTTTAGGTCAAGCTGCTCGTTGTGGTTTCTCC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GCACCCGACA | AAGAGAAGAC | 0 | |
| TTTCCCAACA | AAGGACTCTC | 0 | |
| GGATCAAACA | AGGACTCTAA | 0 | |
| CTCTGAAACA | TCTCAGACGC | 0 | |
| TTATCGGACA | AAGAGAGGAC | 0 | |
| CCCTCAAACA | AAGGCTCTCA | 0 |
DNA sequence
GATGGGGTGATTGGGGTCTTAGCCGAGGGTGGCTGCTCCGTTCGGGATGTTGGAACGTGGTCCGTGTTGAGCGGCCACAAGCATCGGGAAGGAGCAGCCG
TGAAGTATTATGCCGGACTGGACGTTTCGCTGGAAGAGACCGCGATCTGCGTTGTCGACGATACGGGTCGGATCGTGCGGGAGGCGCGGGCGGCGAGTGA
GCCTGGCGCGCTGGTGCAGGCGCTGAACCAGATCGGCCTGCCCCTGGAGCGCATCGGCCTGGAAGCGTGCTCGCTGACGGCCTGGCTGCACGACGGCCTG
CGCGAGGCGGGCTTGCCGGCGATCTGCATCGAGACGCGCCAGGCCAATGCCGCGATGAAGACGATGCCCAACAAGACCGACCGCAACGACGCACGCGCCC
TGGCGCAGATCATGCGGACGGGCTGGTTCCGGCAGGTCCATGTCAAGAGCCGTCAGTGCCGGCTGTGGCGTTCGCTGCTGGTGGCGCGCCGCACGGTGCT
CAACGAGATGCGTTCGATCGAGAACGTGGTGCGGGGGATCCTGCGCGAAGCCGGGCTCAAGCTCGGCACGCCTGGCCGTGCAGCCTTCGCCGGCCGCGTA
CGCGAACTGGCCGAGGGCGTGCCCCTGATGACGCAGCTCGTCGAACCGCTCCTGGAGGTGCTGGCCAGCATGCTGACCGCACTCGCCGGCTTGACGAAGC
AGGTCATGGATCTCGTCAAGAAAGAGGCGGTCTGCCAGCGGCTGATGAGCGTGCCGGGCGTCGGCCCCATCACCGCGCTTGCCTTCCGGGCGACGATCGA
CCGGCCCGACCGGTTCAGGCGCTCGCGCGACGTCGGCGCCCATCTCGGTCTGACGCCGGCGCGCTACCAGTCCGGCGAGACCGACATCCAGGGCAAGATC
AGCCGTTGCGGCGACGAACTCGCGCGCACCGCGCTCTACGAGGCGGCGCATACGCTGCTGGTGCGGAGCCAGAAATGGTCGAGCCTGCGCGCCTGGGGGA
TGAAGATCGCCAGGCGTCGCGGCATGGCCCGCGCCCGCGTCGCGGTCGCCCGCAAGCTCGCCGTCATCCTCCATCGCATGTGGAGCGACGGCACCGCGTT
CCGCTGGGGTAAGGAGCCCGCAGAGGGTGCCACGCTCGCAGGATGACGCCGTCACCGCGAAACAGGAGGGCAAAACACCACGCATGAACCCGAAAGGGTG
AACCGGATCGTTCCCGTGGGGACGATGGGCCTGGCGATCTCGTTGAGAGTCCAGAACCTGCGGGTGCAAACCCGCAAGGTCGTGAAACAGATTGAGACGC
CTCGCCCTCCTGACCCCATCATGCGGCGGCCAAGCGCCGACCGCGAAGAGAAGCGTGTGACCCACGGGGCGACACAAGCCGGAGAAACCACAACGAGCAG
CTTGACCTAAACGACCCCAATCAGAG
TGAAGTATTATGCCGGACTGGACGTTTCGCTGGAAGAGACCGCGATCTGCGTTGTCGACGATACGGGTCGGATCGTGCGGGAGGCGCGGGCGGCGAGTGA
GCCTGGCGCGCTGGTGCAGGCGCTGAACCAGATCGGCCTGCCCCTGGAGCGCATCGGCCTGGAAGCGTGCTCGCTGACGGCCTGGCTGCACGACGGCCTG
CGCGAGGCGGGCTTGCCGGCGATCTGCATCGAGACGCGCCAGGCCAATGCCGCGATGAAGACGATGCCCAACAAGACCGACCGCAACGACGCACGCGCCC
TGGCGCAGATCATGCGGACGGGCTGGTTCCGGCAGGTCCATGTCAAGAGCCGTCAGTGCCGGCTGTGGCGTTCGCTGCTGGTGGCGCGCCGCACGGTGCT
CAACGAGATGCGTTCGATCGAGAACGTGGTGCGGGGGATCCTGCGCGAAGCCGGGCTCAAGCTCGGCACGCCTGGCCGTGCAGCCTTCGCCGGCCGCGTA
CGCGAACTGGCCGAGGGCGTGCCCCTGATGACGCAGCTCGTCGAACCGCTCCTGGAGGTGCTGGCCAGCATGCTGACCGCACTCGCCGGCTTGACGAAGC
AGGTCATGGATCTCGTCAAGAAAGAGGCGGTCTGCCAGCGGCTGATGAGCGTGCCGGGCGTCGGCCCCATCACCGCGCTTGCCTTCCGGGCGACGATCGA
CCGGCCCGACCGGTTCAGGCGCTCGCGCGACGTCGGCGCCCATCTCGGTCTGACGCCGGCGCGCTACCAGTCCGGCGAGACCGACATCCAGGGCAAGATC
AGCCGTTGCGGCGACGAACTCGCGCGCACCGCGCTCTACGAGGCGGCGCATACGCTGCTGGTGCGGAGCCAGAAATGGTCGAGCCTGCGCGCCTGGGGGA
TGAAGATCGCCAGGCGTCGCGGCATGGCCCGCGCCCGCGTCGCGGTCGCCCGCAAGCTCGCCGTCATCCTCCATCGCATGTGGAGCGACGGCACCGCGTT
CCGCTGGGGTAAGGAGCCCGCAGAGGGTGCCACGCTCGCAGGATGACGCCGTCACCGCGAAACAGGAGGGCAAAACACCACGCATGAACCCGAAAGGGTG
AACCGGATCGTTCCCGTGGGGACGATGGGCCTGGCGATCTCGTTGAGAGTCCAGAACCTGCGGGTGCAAACCCGCAAGGTCGTGAAACAGATTGAGACGC
CTCGCCCTCCTGACCCCATCATGCGGCGGCCAAGCGCCGACCGCGAAGAGAAGCGTGTGACCCACGGGGCGACACAAGCCGGAGAAACCACAACGAGCAG
CTTGACCTAAACGACCCCAATCAGAG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1047 bp | 348 aa | 100 | 1146 | + | No |
Chemistry : DEDD
ORF sequence :
VKYYAGLDVSLEETAICVVDDTGRIVREARAASEPGALVQALNQIGLPLERIGLEACSLTAWLHDGLREAGLPAICIETRQANAAMKTMPNKTDRNDARA
LAQIMRTGWFRQVHVKSRQCRLWRSLLVARRTVLNEMRSIENVVRGILREAGLKLGTPGRAAFAGRVRELAEGVPLMTQLVEPLLEVLASMLTALAGLTK
QVMDLVKKEAVCQRLMSVPGVGPITALAFRATIDRPDRFRRSRDVGAHLGLTPARYQSGETDIQGKISRCGDELARTALYEAAHTLLVRSQKWSSLRAWG
MKIARRRGMARARVAVARKLAVILHRMWSDGTAFRWGKEPAEGATLAG
LAQIMRTGWFRQVHVKSRQCRLWRSLLVARRTVLNEMRSIENVVRGILREAGLKLGTPGRAAFAGRVRELAEGVPLMTQLVEPLLEVLASMLTALAGLTK
QVMDLVKKEAVCQRLMSVPGVGPITALAFRATIDRPDRFRRSRDVGAHLGLTPARYQSGETDIQGKISRCGDELARTALYEAAHTLLVRSQKWSSLRAWG
MKIARRRGMARARVAVARKLAVILHRMWSDGTAFRWGKEPAEGATLAG
Blast result :
Comments
ISMno22 is 68% aa similar to ISRhru3.
References
1] Ming-Chun Lee and David Robinson (2009) Direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.