ISMisp1
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009654 | ND | Marinomonas sp. | Marinomonas sp. MWYL1 |
DNA section
IS Length : 1497 bp
Ends
IR Length : 12
IRL : GTCGTCCCTGAAAATCTCTCAACCTATTGAATCTGATGTGTTTTTATAAG
IRR : GTCGCCCCTGAATAATGGCGTTTCAGGCAAGAAGCGCCATGCTATTTTTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTTATTTAAT | TA | AATAATCTCT | 2 |
DNA sequence
GTCGTCCCTGAAAATCTCTCAACCTATTGAATCTGATGTGTTTTTATAAGATATTTAATACCTAAATCTTACGATAAATACGCCTTTAGACCTAAAAAGT
TGCAGAATGGGTGAGTTTTATGAAACCTCGTCAGACAAAGATCGTCCCGCAAAAGGATTTGTTCCAACCTCAACTCGTAGACATCATTAATCCCAATCAT
CCTTTAATTCGACTGGCTAAGATCATTGATTGGAGGCAATTGGACTCAACGCTTAGTGCCCATTTTTCAAGCGTTGGTGCGGCCGCGTTGCCAACGCGTC
TTATGGCGGGATTGCTGTATTTGCAGCACTTGCATAATTTGTCTGACGAAATGGTATTAGAGCAATGGCTTGAATCGCCTTATTACCAATACTTTTGCGG
CGAAACCTTTTTCCAGCACGACTTCCCGTGCCATCCAACCAGTCTTGTTAAATGGCGAAAACGGTTAGGAGAAGAAGGCTGTGAATGGCTGCTTACCCAG
ACGATACAAGCAGGATTGAAACTAAAAGTCATCAAACCAGCGAGCCTAAAACGAGTCGTGGTAGACACCACGGTACAAGAAAAAAACATCACCTTCCCAA
CCGATGCCAAGCTCTACAACAAGGCTCGACAGCAGCTCACTCAGGTAGCCAAAGAACAAAATATCACGCTAAGACAAACCTACGACAAAGCCTGTCATGA
GCTAATGCCAAAAATTGGACGCTATGGTCACGCCAAACAATACAAACGGATGAGAAAAGCGATTAAGCAAGTGAAAGGCTTTTTAGGGCGAGTCATGCGA
GATATTGATCGGCAAGTAAAACAACAAGGGTTAACGCTCACCCAAAAACAGGAAGACACACTTAACCAAGCCTATCGATTACTAAAACAAACTCGCCAGA
GCAAAAACAAACTGTATAGCTTGCATGAACCTAATGTGGACTGCATATCCAAAGGCAAAGCGCATAAACGCTATGAGTTTGGCGTAAAAGCGAGCATAGC
CGCAACAGCAAAAGAGTCCTTCATCGTGGGAGCCAGAAGCTATCCAGGTAATCCTTATGATGGCCATACCTTGAAAGATCAACTTCAACAAGTTGAAACC
CTAACAGGAAAAAAACCGGAAACCTGTTTTGTTGATAGAGGGTATAAAGGGTCGGGCGTAGACGATATTAAGGTGTTGGTTGCAGGTCAAAAACGAGGTG
TACTCAAGAAAGAGAAGCCATGGATGGGAAGACGAAATAGCGTAGAGCCCATCATAGGGCATCTCAAATCGGATGGAAAACTCAGACGATGCTTCTTAAA
AGGTGTACTAGGCGATGCAATTAACGTGATCTTAAGTGCCTGTGGCCAGAACTTACGTAAGCTACTGAAGTGGCTTTATTACGCCCCATATTTTGGGCCA
TTTTTAAGACGATTATGGTTGAAAATAATTTTTCAACAGGAAGGACCTAAAAATAGCATGGCGCTTCTTGCCTGAAACGCCATTATTCAGGGGCGAC
TGCAGAATGGGTGAGTTTTATGAAACCTCGTCAGACAAAGATCGTCCCGCAAAAGGATTTGTTCCAACCTCAACTCGTAGACATCATTAATCCCAATCAT
CCTTTAATTCGACTGGCTAAGATCATTGATTGGAGGCAATTGGACTCAACGCTTAGTGCCCATTTTTCAAGCGTTGGTGCGGCCGCGTTGCCAACGCGTC
TTATGGCGGGATTGCTGTATTTGCAGCACTTGCATAATTTGTCTGACGAAATGGTATTAGAGCAATGGCTTGAATCGCCTTATTACCAATACTTTTGCGG
CGAAACCTTTTTCCAGCACGACTTCCCGTGCCATCCAACCAGTCTTGTTAAATGGCGAAAACGGTTAGGAGAAGAAGGCTGTGAATGGCTGCTTACCCAG
ACGATACAAGCAGGATTGAAACTAAAAGTCATCAAACCAGCGAGCCTAAAACGAGTCGTGGTAGACACCACGGTACAAGAAAAAAACATCACCTTCCCAA
CCGATGCCAAGCTCTACAACAAGGCTCGACAGCAGCTCACTCAGGTAGCCAAAGAACAAAATATCACGCTAAGACAAACCTACGACAAAGCCTGTCATGA
GCTAATGCCAAAAATTGGACGCTATGGTCACGCCAAACAATACAAACGGATGAGAAAAGCGATTAAGCAAGTGAAAGGCTTTTTAGGGCGAGTCATGCGA
GATATTGATCGGCAAGTAAAACAACAAGGGTTAACGCTCACCCAAAAACAGGAAGACACACTTAACCAAGCCTATCGATTACTAAAACAAACTCGCCAGA
GCAAAAACAAACTGTATAGCTTGCATGAACCTAATGTGGACTGCATATCCAAAGGCAAAGCGCATAAACGCTATGAGTTTGGCGTAAAAGCGAGCATAGC
CGCAACAGCAAAAGAGTCCTTCATCGTGGGAGCCAGAAGCTATCCAGGTAATCCTTATGATGGCCATACCTTGAAAGATCAACTTCAACAAGTTGAAACC
CTAACAGGAAAAAAACCGGAAACCTGTTTTGTTGATAGAGGGTATAAAGGGTCGGGCGTAGACGATATTAAGGTGTTGGTTGCAGGTCAAAAACGAGGTG
TACTCAAGAAAGAGAAGCCATGGATGGGAAGACGAAATAGCGTAGAGCCCATCATAGGGCATCTCAAATCGGATGGAAAACTCAGACGATGCTTCTTAAA
AGGTGTACTAGGCGATGCAATTAACGTGATCTTAAGTGCCTGTGGCCAGAACTTACGTAAGCTACTGAAGTGGCTTTATTACGCCCCATATTTTGGGCCA
TTTTTAAGACGATTATGGTTGAAAATAATTTTTCAACAGGAAGGACCTAAAAATAGCATGGCGCTTCTTGCCTGAAACGCCATTATTCAGGGGCGAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1356 bp | 451 aa | 120 | 1475 | + | No |
Chemistry : DDE
ORF sequence :
MKPRQTKIVPQKDLFQPQLVDIINPNHPLIRLAKIIDWRQLDSTLSAHFSSVGAAALPTRLMAGLLYLQHLHNLSDEMVLEQWLESPYYQYFCGETFFQH
DFPCHPTSLVKWRKRLGEEGCEWLLTQTIQAGLKLKVIKPASLKRVVVDTTVQEKNITFPTDAKLYNKARQQLTQVAKEQNITLRQTYDKACHELMPKIG
RYGHAKQYKRMRKAIKQVKGFLGRVMRDIDRQVKQQGLTLTQKQEDTLNQAYRLLKQTRQSKNKLYSLHEPNVDCISKGKAHKRYEFGVKASIAATAKES
FIVGARSYPGNPYDGHTLKDQLQQVETLTGKKPETCFVDRGYKGSGVDDIKVLVAGQKRGVLKKEKPWMGRRNSVEPIIGHLKSDGKLRRCFLKGVLGDA
INVILSACGQNLRKLLKWLYYAPYFGPFLRRLWLKIIFQQEGPKNSMALLA
DFPCHPTSLVKWRKRLGEEGCEWLLTQTIQAGLKLKVIKPASLKRVVVDTTVQEKNITFPTDAKLYNKARQQLTQVAKEQNITLRQTYDKACHELMPKIG
RYGHAKQYKRMRKAIKQVKGFLGRVMRDIDRQVKQQGLTLTQKQEDTLNQAYRLLKQTRQSKNKLYSLHEPNVDCISKGKAHKRYEFGVKASIAATAKES
FIVGARSYPGNPYDGHTLKDQLQQVETLTGKKPETCFVDRGYKGSGVDDIKVLVAGQKRGVLKKEKPWMGRRNSVEPIIGHLKSDGKLRRCFLKGVLGDA
INVILSACGQNLRKLLKWLYYAPYFGPFLRRLWLKIIFQQEGPKNSMALLA
Blast result :
Comments
ISMisp1 is 65% aa similar to ISRso9.
References
1] ISfinder annotation (2010)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Johnston,A.W.B., Todd,J.D., Rogers,R., Wexler,M., Bond,P.L., Li,Y. and Richardson,P. (2007) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Johnston,A.W.B., Todd,J.D., Rogers,R., Wexler,M., Bond,P.L., Li,Y. and Richardson,P. (2007) Direct submission GenBank.