ISMtsp5
- Family IS3
- Group IS2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010511 | ND | Methylobacterium sp. | Methylobacterium sp. 4-46 |
DNA section
IS Length : 1347 bp
Ends
IR Length : 15/26
IRL : TCCTCCGCCCCACGGTTGCTTGAGACACCCCGTTAGCGGACGGTCTCCGC
IRR : TGTACCGCCCGCAGTTTGTGAGACACCGATTTCCAGCCTACGCGGCCAGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGAGAGCAGC | AGCG | TCTGGACGAC | 4 |
TCCTGCACAA | GGAC | CATCTCTTCC | 4 |
ATCATGGGTC | GCCTATAGGC | 0 |
DNA sequence
TCCTCCGCCCCACGGTTGCTTGAGACACCCCGTTAGCGGACGGTCTCCGCGACAGGGGTGAGGACGATGACCACATACACGAGGGCGGGTGCCGATGCGG
TCGGTCCCGGCCGGGGCGGGAGGATGTCCCGGCAGCGCAAGCGGGATGCCGTACTGCGACTGCTGCGCGGTGAGGACCTGGAGACTATCTCGCGCAGCCT
GGGCGTGACCGCCGCGACCCTGTCGGGCTGGCGCGACGCCTTCCTGGCAGCGGGTGAGGCGAGCCTGTCCACCCGGCCCACCGATGCGGAAGCGCTGGAG
AGCGGGCGGCTGAAGGCCAGGCTCGGCGAGATGTTGCTGGAGCGCGAGTTGCTGGAGGCCAAGATCACGGCTCTGGAGGCGCGCGGCCCCGGCCCTTTGG
CCCGCAGGAGGTCGCGGCCATGAGCCAGGTCCTCTCCCCCGTCAGTGGCAAAGCTTACGGGCTGGCCCGCGTCTGCCGGATCTGGGGCCTGTCGCGCGCC
ACCGTCCACCGGCATCTCTCACCCGCGCGGCCGGAGCCGGCGCGGCGTCCCGGCCCGGTTGGGCCGATGCCGGATGCGGCGCTGCTCGACGAGATCCGCG
CCACCCTCACCGGCAGCCCCTTTCACGGCGAGGGTCACCGCAAGGTCTGGGCGCGCCTGCGCCACAAGGGCGTGCGCACCTCCAAGCGCCGCGTGCTGCG
CCTGATGCGCGACCATGATCTGCTCGCCCCCTCGCGCGTCGGCGCGCCGCGCGGCCCACGCACGCACGACGGCACCATCATCCCGGAGGCAGTGGACACG
ATGTGGGGCACCGACCTGACCACCACCTGGACCGGCGAGGGCCAAGTCGCGGTGTTCGTGGCCGTCGACCACTGCTCGGCCGAGTGCGTGGGCGTTCATG
CGGCGCGGCGGGCCACGCGCTTCGAGGCGCTGGAGCCGATCCGCCAGGGTGTGCGGCAGCGCTTCGGCAGCTTCGCGGCCAAGAGTGCTTCCGGCCTGAG
TGTCCGGCACGACCATGGCAGCCAGTACATGTCCGACGCCTTCCAGGCGGAACTGGCGTTCCTGGGCATCGCGAGTTCGCCCGCCTTCGTGCGGGCGCCG
GAGGGCAACGGCTGCGCCGAGCGTTTCATCCGCACGCTCAAGGAGAACCTGCTGTGGGTGGACAGTTTCGACACGGTCGAAGACCTCCGCCGCGCCCTGC
TGGCGTTCCGCGAGATCTACAACGAGACGTGGCTGATCGAGCGGCACGGGTTCCGCCCACCGGCAGCCATTCGTGCCGCACAGCTTTCACCCGCGGCTCT
GGCCGCGTAGGCTGGAAATCGGTGTCTCACAAACTGCGGGCGGTACA
TCGGTCCCGGCCGGGGCGGGAGGATGTCCCGGCAGCGCAAGCGGGATGCCGTACTGCGACTGCTGCGCGGTGAGGACCTGGAGACTATCTCGCGCAGCCT
GGGCGTGACCGCCGCGACCCTGTCGGGCTGGCGCGACGCCTTCCTGGCAGCGGGTGAGGCGAGCCTGTCCACCCGGCCCACCGATGCGGAAGCGCTGGAG
AGCGGGCGGCTGAAGGCCAGGCTCGGCGAGATGTTGCTGGAGCGCGAGTTGCTGGAGGCCAAGATCACGGCTCTGGAGGCGCGCGGCCCCGGCCCTTTGG
CCCGCAGGAGGTCGCGGCCATGAGCCAGGTCCTCTCCCCCGTCAGTGGCAAAGCTTACGGGCTGGCCCGCGTCTGCCGGATCTGGGGCCTGTCGCGCGCC
ACCGTCCACCGGCATCTCTCACCCGCGCGGCCGGAGCCGGCGCGGCGTCCCGGCCCGGTTGGGCCGATGCCGGATGCGGCGCTGCTCGACGAGATCCGCG
CCACCCTCACCGGCAGCCCCTTTCACGGCGAGGGTCACCGCAAGGTCTGGGCGCGCCTGCGCCACAAGGGCGTGCGCACCTCCAAGCGCCGCGTGCTGCG
CCTGATGCGCGACCATGATCTGCTCGCCCCCTCGCGCGTCGGCGCGCCGCGCGGCCCACGCACGCACGACGGCACCATCATCCCGGAGGCAGTGGACACG
ATGTGGGGCACCGACCTGACCACCACCTGGACCGGCGAGGGCCAAGTCGCGGTGTTCGTGGCCGTCGACCACTGCTCGGCCGAGTGCGTGGGCGTTCATG
CGGCGCGGCGGGCCACGCGCTTCGAGGCGCTGGAGCCGATCCGCCAGGGTGTGCGGCAGCGCTTCGGCAGCTTCGCGGCCAAGAGTGCTTCCGGCCTGAG
TGTCCGGCACGACCATGGCAGCCAGTACATGTCCGACGCCTTCCAGGCGGAACTGGCGTTCCTGGGCATCGCGAGTTCGCCCGCCTTCGTGCGGGCGCCG
GAGGGCAACGGCTGCGCCGAGCGTTTCATCCGCACGCTCAAGGAGAACCTGCTGTGGGTGGACAGTTTCGACACGGTCGAAGACCTCCGCCGCGCCCTGC
TGGCGTTCCGCGAGATCTACAACGAGACGTGGCTGATCGAGCGGCACGGGTTCCGCCCACCGGCAGCCATTCGTGCCGCACAGCTTTCACCCGCGGCTCT
GGCCGCGTAGGCTGGAAATCGGTGTCTCACAAACTGCGGGCGGTACA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
357 bp | 118 aa | 67 | 423 | + | No |
Description : First part of the transposase
ORF sequence :
MTTYTRAGADAVGPGRGGRMSRQRKRDAVLRLLRGEDLETISRSLGVTAATLSGWRDAFLAAGEASLSTRPTDAEALESGRLKARLGEMLLERELLEAKI
TALEARGPGPLARRRSRP
TALEARGPGPLARRRSRP
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1053 bp | 350 aa | 258 | 1310 | + | No |
Description : Second part of the transposase
ORF sequence :
GEPVHPAHRCGSAGERAAEGQARRDVAGARVAGGQDHGSGGARPRPFGPQEVAAMSQVLSPVSGKAYGLARVCRIWGLSRATVHRHLSPARPEPARRPGP
VGPMPDAALLDEIRATLTGSPFHGEGHRKVWARLRHKGVRTSKRRVLRLMRDHDLLAPSRVGAPRGPRTHDGTIIPEAVDTMWGTDLTTTWTGEGQVAVF
VAVDHCSAECVGVHAARRATRFEALEPIRQGVRQRFGSFAAKSASGLSVRHDHGSQYMSDAFQAELAFLGIASSPAFVRAPEGNGCAERFIRTLKENLLW
VDSFDTVEDLRRALLAFREIYNETWLIERHGFRPPAAIRAAQLSPAALAA
VGPMPDAALLDEIRATLTGSPFHGEGHRKVWARLRHKGVRTSKRRVLRLMRDHDLLAPSRVGAPRGPRTHDGTIIPEAVDTMWGTDLTTTWTGEGQVAVF
VAVDHCSAECVGVHAARRATRFEALEPIRQGVRQRFGSFAAKSASGLSVRHDHGSQYMSDAFQAELAFLGIASSPAFVRAPEGNGCAERFIRTLKENLLW
VDSFDTVEDLRRALLAFREIYNETWLIERHGFRPPAAIRAAQLSPAALAA
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1244 bp | 414 aa | 67 | 1310 | + | Yes |
Chemistry : DDE
ORF sequence :
MTTYTRAGADAVGPGRGGRMSRQRKRDAVLRLLRGEDLETISRSLGVTAATLSGWRDAFLAAGEASLSTRPTDAEALESGRLKARLGEMLLERELLEAKI
TALEARGPGPFGPQEVAAMSQVLSPVSGKAYGLARVCRIWGLSRATVHRHLSPARPEPARRPGPVGPMPDAALLDEIRATLTGSPFHGEGHRKVWARLRH
KGVRTSKRRVLRLMRDHDLLAPSRVGAPRGPRTHDGTIIPEAVDTMWGTDLTTTWTGEGQVAVFVAVDHCSAECVGVHAARRATRFEALEPIRQGVRQRF
GSFAAKSASGLSVRHDHGSQYMSDAFQAELAFLGIASSPAFVRAPEGNGCAERFIRTLKENLLWVDSFDTVEDLRRALLAFREIYNETWLIERHGFRPPA
AIRAAQLSPAALAA
TALEARGPGPFGPQEVAAMSQVLSPVSGKAYGLARVCRIWGLSRATVHRHLSPARPEPARRPGPVGPMPDAALLDEIRATLTGSPFHGEGHRKVWARLRH
KGVRTSKRRVLRLMRDHDLLAPSRVGAPRGPRTHDGTIIPEAVDTMWGTDLTTTWTGEGQVAVFVAVDHCSAECVGVHAARRATRFEALEPIRQGVRQRF
GSFAAKSASGLSVRHDHGSQYMSDAFQAELAFLGIASSPAFVRAPEGNGCAERFIRTLKENLLWVDSFDTVEDLRRALLAFREIYNETWLIERHGFRPPA
AIRAAQLSPAALAA
Blast result :
Comments
ISMtsp5 is 43% aa similar to ISButh1.
References
1] Ming-Chun Lee and David Robinson (2009) Direct submission.
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E.,Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T.,Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M.,Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2008) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E.,Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T.,Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M.,Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2008) Direct submission GenBank.