ISMno38
- Family IS1182
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_011894 | ND | Methylobacterium nodulans | Methylobacterium nodulans ORS 2060 Methylobacterium nodulans ORS 2060 plasmid pMNOD02 Methylobacterium nodulans ORS 2060 plasmid pMNOD01 |
DNA section
IS Length : 1466 bp
Ends
IR Length : 16
IRL : GAGCCCGTCCGAGTAAGTACCTCGACGGCGGCGCTTTGGGATGATTCACT
IRR : GAGCCCGTCCGAGTAACGGTTTGATGCGTTGGGACTAAGGTTGAGATCTG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ACGCGCGCGA | CTAG | ATCATCGACC | 4 |
| GCGCACCCAG | CTAG | AGTTTGTTCG | 4 |
| GCCCGCGGAG | CTAG | ATGTTCTGTC | 4 |
| CCGGTCCTCC | CTAG | CTGTGCCGAA | 4 |
| CGTGACACGT | CTAG | GGCTAAAGGA | 4 |
| GATCAATCCA | CTAG | GTGTGCAGTC | 4 |
| TGAAAATGCT | CTAG | TGTGCGCAGG | 4 |
| CCAGTCGCAT | CTAG | TTGAGTAGGG | 4 |
| ATCCAGACAA | CTAG | CCCGCCTTAT | 4 |
| CCGAGCCGAT | CTAG | ATGGACGTCC | 4 |
| CTCCGATGAT | CTAG | CTAACGCTTA | 4 |
| CACCGAACAT | CTAG | ACCTGCTCCT | 4 |
| AGGCGTTCAA | CTAG | GCGCGCGGCG | 4 |
| GGGAGCGGCT | CTAG | TGTGGGTAAT | 4 |
| CAACATTGCC | CTAG | TCGCTCGCTT | 4 |
DNA sequence
GAGCCCGTCCGAGTAAGTACCTCGACGGCGGCGCTTTGGGATGATTCACTCGGCTCATGGCCAAGGTGTTTCGCTCCTGGGACGTCGATCAGGGCTGGCT
GCTGCCACCCTCGCTGCATGAGTTCGTGCCGCCCGGGCACATGGCGCACTTCGTGCGCGATACGGTGCGCGAGGCGCTCGACCTCTCAGCCATTCTCGAC
ACCTACACCGAGGAGCGCGGCTACCCGCCCTACCATCCCGGCATGATGGTGGCCCTGCTCCTCTACGGCTACAGCCGCGGTCTGTACTCGTCGCGTCAGC
TCGCCCGCGCCTGCGAGGAGCGGGTTGACTTCATGGCCGTGACCGGCCTGAACCGGCCCGACTTCCGCACCATCGCTGACTTCCGCAAGCGGCATCTGAC
GGCGCTCTCGGACCTGTTCGTGCAGGTGCTGCGGCTGTGCCGGGCGGCCGGGCTGGTCGGCTTTGCCCACGTGGCGGTGGACGGCACCAAGCTGAAGGCC
AACGCCTCGCGCCACAAGGCGATGAGCTACGGCCGGATGAAGGCGGCCGAGTCGACGCTGGCCGCCGAGGTCGAGGCTTGGCTGGATCAAGCGCGCGAGG
CCGACGCGGCGGAGGATCGGGCTCATGGGACCGACCATCGTGGCGACGAGACACCGGCCTGGATGGCCGACAAGCAGCGGCGGCTGGAGACGATCCGCGC
CGCCAAGGCCGCGTTGGAGGCAGAGGCTGCCGATCCGCCCGATCCGGAGGACGAGGACGGGCCGGGGGCCTCGTCGGGCATGCGCTGGCAAGGTCGGCCC
TTGCGGGGCGAGGACGGCGGTCCGCCCGACCGGGCGCAGCGCAACTTCACCGACCCGGACAGCCGCATCCTGCCCACGCGCGACGGGTTCGTGCAGGGCT
ACAACGGCCAGATTGCGGTTGATGCGGCCCATCAGGTGATCGTCGCGCATCGGCTCGTGACGAACCCCGCCGACTCGCGCGCTCTCGTGCCGCTCGTCGA
CGGCGTCTGCACCCATCTCGGGCGCAAGCCGCGGGAGGTCTCCGGAGATGCCGGCTTTGCCACCGAGGCGAACCTGGCCGCGCTGCAGGAGCGACGGATC
ACAGCCTATCTCGCTCCGGGCCGTGCCCGTCACGGCGAGGCGGATGCAGCAGGTCGCCGGAGGCTGACGAAGATGCCCCTGATGAGCGCGATGGCCGTCC
GCCTGAAGCGGGCTGGGCGCCGGAGCCGTTACCGTCTCAGGAAGCAGGTCGTCGAGCCGGTGTTCGGGCAGATCAAGCAGGCCAGAGGCTTCCGACAGTT
CCTGCTACGTGGGCTCGATCAGGTCCGCGGCGAGTGGGCGATGATCTGCACCGCCCATAACCTCCTGAAGCTGGCGCAGGCCGCGCGCTGAGCCTGTGGC
GCAGGAGCCATCCGCCCAGATCTCAACCTTAGTCCCAACGCATCAAACCGTTACTCGGACGGGCTC
GCTGCCACCCTCGCTGCATGAGTTCGTGCCGCCCGGGCACATGGCGCACTTCGTGCGCGATACGGTGCGCGAGGCGCTCGACCTCTCAGCCATTCTCGAC
ACCTACACCGAGGAGCGCGGCTACCCGCCCTACCATCCCGGCATGATGGTGGCCCTGCTCCTCTACGGCTACAGCCGCGGTCTGTACTCGTCGCGTCAGC
TCGCCCGCGCCTGCGAGGAGCGGGTTGACTTCATGGCCGTGACCGGCCTGAACCGGCCCGACTTCCGCACCATCGCTGACTTCCGCAAGCGGCATCTGAC
GGCGCTCTCGGACCTGTTCGTGCAGGTGCTGCGGCTGTGCCGGGCGGCCGGGCTGGTCGGCTTTGCCCACGTGGCGGTGGACGGCACCAAGCTGAAGGCC
AACGCCTCGCGCCACAAGGCGATGAGCTACGGCCGGATGAAGGCGGCCGAGTCGACGCTGGCCGCCGAGGTCGAGGCTTGGCTGGATCAAGCGCGCGAGG
CCGACGCGGCGGAGGATCGGGCTCATGGGACCGACCATCGTGGCGACGAGACACCGGCCTGGATGGCCGACAAGCAGCGGCGGCTGGAGACGATCCGCGC
CGCCAAGGCCGCGTTGGAGGCAGAGGCTGCCGATCCGCCCGATCCGGAGGACGAGGACGGGCCGGGGGCCTCGTCGGGCATGCGCTGGCAAGGTCGGCCC
TTGCGGGGCGAGGACGGCGGTCCGCCCGACCGGGCGCAGCGCAACTTCACCGACCCGGACAGCCGCATCCTGCCCACGCGCGACGGGTTCGTGCAGGGCT
ACAACGGCCAGATTGCGGTTGATGCGGCCCATCAGGTGATCGTCGCGCATCGGCTCGTGACGAACCCCGCCGACTCGCGCGCTCTCGTGCCGCTCGTCGA
CGGCGTCTGCACCCATCTCGGGCGCAAGCCGCGGGAGGTCTCCGGAGATGCCGGCTTTGCCACCGAGGCGAACCTGGCCGCGCTGCAGGAGCGACGGATC
ACAGCCTATCTCGCTCCGGGCCGTGCCCGTCACGGCGAGGCGGATGCAGCAGGTCGCCGGAGGCTGACGAAGATGCCCCTGATGAGCGCGATGGCCGTCC
GCCTGAAGCGGGCTGGGCGCCGGAGCCGTTACCGTCTCAGGAAGCAGGTCGTCGAGCCGGTGTTCGGGCAGATCAAGCAGGCCAGAGGCTTCCGACAGTT
CCTGCTACGTGGGCTCGATCAGGTCCGCGGCGAGTGGGCGATGATCTGCACCGCCCATAACCTCCTGAAGCTGGCGCAGGCCGCGCGCTGAGCCTGTGGC
GCAGGAGCCATCCGCCCAGATCTCAACCTTAGTCCCAACGCATCAAACCGTTACTCGGACGGGCTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1335 bp | 444 aa | 57 | 1391 | + | No |
Chemistry : DDE
ORF sequence :
MAKVFRSWDVDQGWLLPPSLHEFVPPGHMAHFVRDTVREALDLSAILDTYTEERGYPPYHPGMMVALLLYGYSRGLYSSRQLARACEERVDFMAVTGLNR
PDFRTIADFRKRHLTALSDLFVQVLRLCRAAGLVGFAHVAVDGTKLKANASRHKAMSYGRMKAAESTLAAEVEAWLDQAREADAAEDRAHGTDHRGDETP
AWMADKQRRLETIRAAKAALEAEAADPPDPEDEDGPGASSGMRWQGRPLRGEDGGPPDRAQRNFTDPDSRILPTRDGFVQGYNGQIAVDAAHQVIVAHRL
VTNPADSRALVPLVDGVCTHLGRKPREVSGDAGFATEANLAALQERRITAYLAPGRARHGEADAAGRRRLTKMPLMSAMAVRLKRAGRRSRYRLRKQVVE
PVFGQIKQARGFRQFLLRGLDQVRGEWAMICTAHNLLKLAQAAR
PDFRTIADFRKRHLTALSDLFVQVLRLCRAAGLVGFAHVAVDGTKLKANASRHKAMSYGRMKAAESTLAAEVEAWLDQAREADAAEDRAHGTDHRGDETP
AWMADKQRRLETIRAAKAALEAEAADPPDPEDEDGPGASSGMRWQGRPLRGEDGGPPDRAQRNFTDPDSRILPTRDGFVQGYNGQIAVDAAHQVIVAHRL
VTNPADSRALVPLVDGVCTHLGRKPREVSGDAGFATEANLAALQERRITAYLAPGRARHGEADAAGRRRLTKMPLMSAMAVRLKRAGRRSRYRLRKQVVE
PVFGQIKQARGFRQFLLRGLDQVRGEWAMICTAHNLLKLAQAAR
Blast result :
Comments
ISMno38 is 95% aa similar to ISMdi6.
References
1] Ming-Chun Lee and David Robinson (2009) Direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission.