ISMno38

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_011894 ND Methylobacterium nodulans
Methylobacterium nodulans ORS 2060
Methylobacterium nodulans ORS 2060 plasmid pMNOD02
Methylobacterium nodulans ORS 2060 plasmid pMNOD01
DNA section
IS Length : 1466 bp

Ends


IR Length : 16

IRL : GAGCCCGTCCGAGTAAGTACCTCGACGGCGGCGCTTTGGGATGATTCACT
IRR : GAGCCCGTCCGAGTAACGGTTTGATGCGTTGGGACTAAGGTTGAGATCTG

Insertion site


Left flankDirect repeatRight flankDR Length
ACGCGCGCGACTAGATCATCGACC4
GCGCACCCAGCTAGAGTTTGTTCG4
GCCCGCGGAGCTAGATGTTCTGTC4
CCGGTCCTCCCTAGCTGTGCCGAA4
CGTGACACGTCTAGGGCTAAAGGA4
GATCAATCCACTAGGTGTGCAGTC4
TGAAAATGCTCTAGTGTGCGCAGG4
CCAGTCGCATCTAGTTGAGTAGGG4
ATCCAGACAACTAGCCCGCCTTAT4
CCGAGCCGATCTAGATGGACGTCC4
CTCCGATGATCTAGCTAACGCTTA4
CACCGAACATCTAGACCTGCTCCT4
AGGCGTTCAACTAGGCGCGCGGCG4
GGGAGCGGCTCTAGTGTGGGTAAT4
CAACATTGCCCTAGTCGCTCGCTT4

DNA sequence

GAGCCCGTCCGAGTAAGTACCTCGACGGCGGCGCTTTGGGATGATTCACTCGGCTCATGGCCAAGGTGTTTCGCTCCTGGGACGTCGATCAGGGCTGGCT
GCTGCCACCCTCGCTGCATGAGTTCGTGCCGCCCGGGCACATGGCGCACTTCGTGCGCGATACGGTGCGCGAGGCGCTCGACCTCTCAGCCATTCTCGAC
ACCTACACCGAGGAGCGCGGCTACCCGCCCTACCATCCCGGCATGATGGTGGCCCTGCTCCTCTACGGCTACAGCCGCGGTCTGTACTCGTCGCGTCAGC
TCGCCCGCGCCTGCGAGGAGCGGGTTGACTTCATGGCCGTGACCGGCCTGAACCGGCCCGACTTCCGCACCATCGCTGACTTCCGCAAGCGGCATCTGAC
GGCGCTCTCGGACCTGTTCGTGCAGGTGCTGCGGCTGTGCCGGGCGGCCGGGCTGGTCGGCTTTGCCCACGTGGCGGTGGACGGCACCAAGCTGAAGGCC
AACGCCTCGCGCCACAAGGCGATGAGCTACGGCCGGATGAAGGCGGCCGAGTCGACGCTGGCCGCCGAGGTCGAGGCTTGGCTGGATCAAGCGCGCGAGG
CCGACGCGGCGGAGGATCGGGCTCATGGGACCGACCATCGTGGCGACGAGACACCGGCCTGGATGGCCGACAAGCAGCGGCGGCTGGAGACGATCCGCGC
CGCCAAGGCCGCGTTGGAGGCAGAGGCTGCCGATCCGCCCGATCCGGAGGACGAGGACGGGCCGGGGGCCTCGTCGGGCATGCGCTGGCAAGGTCGGCCC
TTGCGGGGCGAGGACGGCGGTCCGCCCGACCGGGCGCAGCGCAACTTCACCGACCCGGACAGCCGCATCCTGCCCACGCGCGACGGGTTCGTGCAGGGCT
ACAACGGCCAGATTGCGGTTGATGCGGCCCATCAGGTGATCGTCGCGCATCGGCTCGTGACGAACCCCGCCGACTCGCGCGCTCTCGTGCCGCTCGTCGA
CGGCGTCTGCACCCATCTCGGGCGCAAGCCGCGGGAGGTCTCCGGAGATGCCGGCTTTGCCACCGAGGCGAACCTGGCCGCGCTGCAGGAGCGACGGATC
ACAGCCTATCTCGCTCCGGGCCGTGCCCGTCACGGCGAGGCGGATGCAGCAGGTCGCCGGAGGCTGACGAAGATGCCCCTGATGAGCGCGATGGCCGTCC
GCCTGAAGCGGGCTGGGCGCCGGAGCCGTTACCGTCTCAGGAAGCAGGTCGTCGAGCCGGTGTTCGGGCAGATCAAGCAGGCCAGAGGCTTCCGACAGTT
CCTGCTACGTGGGCTCGATCAGGTCCGCGGCGAGTGGGCGATGATCTGCACCGCCCATAACCTCCTGAAGCTGGCGCAGGCCGCGCGCTGAGCCTGTGGC
GCAGGAGCCATCCGCCCAGATCTCAACCTTAGTCCCAACGCATCAAACCGTTACTCGGACGGGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1335 bp444 aa571391+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAKVFRSWDVDQGWLLPPSLHEFVPPGHMAHFVRDTVREALDLSAILDTYTEERGYPPYHPGMMVALLLYGYSRGLYSSRQLARACEERVDFMAVTGLNR
PDFRTIADFRKRHLTALSDLFVQVLRLCRAAGLVGFAHVAVDGTKLKANASRHKAMSYGRMKAAESTLAAEVEAWLDQAREADAAEDRAHGTDHRGDETP
AWMADKQRRLETIRAAKAALEAEAADPPDPEDEDGPGASSGMRWQGRPLRGEDGGPPDRAQRNFTDPDSRILPTRDGFVQGYNGQIAVDAAHQVIVAHRL
VTNPADSRALVPLVDGVCTHLGRKPREVSGDAGFATEANLAALQERRITAYLAPGRARHGEADAAGRRRLTKMPLMSAMAVRLKRAGRRSRYRLRKQVVE
PVFGQIKQARGFRQFLLRGLDQVRGEWAMICTAHNLLKLAQAAR

 

Blast result :
Comments
ISMno38 is 95% aa similar to ISMdi6.
References
1] Ming-Chun Lee and David Robinson (2009) Direct submission.

2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission.