ISMra3
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010505 | ND | Methylobacterium radiotolerans | Methylobacterium radiotolerans JCM 2831 |
DNA section
IS Length : 1398 bp
Ends
IR Length : 23/29
IRL : GAGCTATGCAGGAATTTAGGTGACGGAGGCGGTCAGGCGGCGCGGTGATC
IRR : GAGCTATGCGGGAGATTGGGTGACGACGGTGAGTTGAAGGCGGCGTATCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACGTGCCCGT | CCTCGTGAC | CACACGCCGG | 9 |
DNA sequence
GAGCTATGCAGGAATTTAGGTGACGGAGGCGGTCAGGCGGCGCGGTGATCTGGGCTCGCGGCGACCTCGGTTCCATCGCGGAAGATGACGCCGGCCACGA
CCTTCGGCAACTGGTTTTCGCCCTTCAGCCGGCGCCAGGTCTTTGACGCCGCCATCACCAGCTTGAACACCATCAGCTTGGCGGTCGTGGCCGAGAGCGC
CCCCTTGGTCCGCACGGTCCGATGCCGCACTGTAGCGAACACGCTCTCGATCGGGTTCGAGCTGCGCAGGTGATCCCAGTGCTCGGCCGGGAAGTCGTAG
AACGCCAACAGCCTGTCACGATCCTTGGTCAGGCAGGCAGCGGCGCGGGGGTACTTGGCCCCGTACTTCTCGACGAAGACGGCCAGCGCGGCCTCGGCCG
CCGCCCGGGTCGGCGCGCCGTGGATCTCGCGCAGGTCCGCCTTCATCGCCGGCTGGACGGACTTCGGCACCTTGTCGAGGACGTTGGCCGTCTTGTGGAC
CCAACACCGTTGATGGGCCGTGCCGGGGAAGACCTCGTCCAGCGCCCGCCAGAAGCCGAGAGCGCCGTCGCCGACCGCGATCTCGGGCGCGATCGACAGC
CCGCGCCGCTTCACGTCGACGAGCAGCTCCCGCCAGCTCTGGACGCTCTCGCGCACACCCACCTGGAACCCGACGAGTTCCTTCTTGCCCTCGGGCGTCG
CCCCGATCAGCACGAGCATGCAGTCTGCCTGCTCGGCCATCCGCGCCTGCAGATAGACGCCGTCGGCCCAGACGTAGGCGTAGCGGCGCGCCGAGAGATC
GCGGCCCTGCCAGCGGACGTACTCATCCGCCCACGTCGCCGTCAGCCGGGCGATGACGGCCGGCGACAGGTTCGGGGCGTCACGACCCAAGAGGGCTGCC
AGCGCGTCCTGGAAGTCGCCGGTCGAGATGCCGCGCAGGTACAGCACCGGCAGCAGCGCATCCAGGCTGCGGGTGCGCCGCGCCCACTTCGGTAGGAGGG
TCGAGGTGAACCGGACCCGGTCCTCCGACCCGCTCGCACCGCGATCCCGCACACGGACCCGTGCGACCGGCACCGGGCCGATGCCGGTCTGGATCGCCCG
CTCCGGCCCGTGACCGTGCCGCACCAGCCGAGCCCGTCCATCCTGCAGTCGCAGGTCCTGCATCGCGCTCAAGAACGCGTCCGCCTCCATCTCGACAGCT
TGAGCGAGCAGGCGGCGAGCGCCGCTACGCAGCACCTCGGTCAGGGGATCGTCGAGGTCTTCGGGATGACGAAGTCGGACGAGGTTGGTAGGTGTCTCCA
TGGCGTATCGCTCTCACTGAGAGGTTCTGGCAGGCTCGACACCCGCCTCGATACGCCGCCTTCAACTCACCGTCGTCACCCAATCTCCCGCATAGCTC
CCTTCGGCAACTGGTTTTCGCCCTTCAGCCGGCGCCAGGTCTTTGACGCCGCCATCACCAGCTTGAACACCATCAGCTTGGCGGTCGTGGCCGAGAGCGC
CCCCTTGGTCCGCACGGTCCGATGCCGCACTGTAGCGAACACGCTCTCGATCGGGTTCGAGCTGCGCAGGTGATCCCAGTGCTCGGCCGGGAAGTCGTAG
AACGCCAACAGCCTGTCACGATCCTTGGTCAGGCAGGCAGCGGCGCGGGGGTACTTGGCCCCGTACTTCTCGACGAAGACGGCCAGCGCGGCCTCGGCCG
CCGCCCGGGTCGGCGCGCCGTGGATCTCGCGCAGGTCCGCCTTCATCGCCGGCTGGACGGACTTCGGCACCTTGTCGAGGACGTTGGCCGTCTTGTGGAC
CCAACACCGTTGATGGGCCGTGCCGGGGAAGACCTCGTCCAGCGCCCGCCAGAAGCCGAGAGCGCCGTCGCCGACCGCGATCTCGGGCGCGATCGACAGC
CCGCGCCGCTTCACGTCGACGAGCAGCTCCCGCCAGCTCTGGACGCTCTCGCGCACACCCACCTGGAACCCGACGAGTTCCTTCTTGCCCTCGGGCGTCG
CCCCGATCAGCACGAGCATGCAGTCTGCCTGCTCGGCCATCCGCGCCTGCAGATAGACGCCGTCGGCCCAGACGTAGGCGTAGCGGCGCGCCGAGAGATC
GCGGCCCTGCCAGCGGACGTACTCATCCGCCCACGTCGCCGTCAGCCGGGCGATGACGGCCGGCGACAGGTTCGGGGCGTCACGACCCAAGAGGGCTGCC
AGCGCGTCCTGGAAGTCGCCGGTCGAGATGCCGCGCAGGTACAGCACCGGCAGCAGCGCATCCAGGCTGCGGGTGCGCCGCGCCCACTTCGGTAGGAGGG
TCGAGGTGAACCGGACCCGGTCCTCCGACCCGCTCGCACCGCGATCCCGCACACGGACCCGTGCGACCGGCACCGGGCCGATGCCGGTCTGGATCGCCCG
CTCCGGCCCGTGACCGTGCCGCACCAGCCGAGCCCGTCCATCCTGCAGTCGCAGGTCCTGCATCGCGCTCAAGAACGCGTCCGCCTCCATCTCGACAGCT
TGAGCGAGCAGGCGGCGAGCGCCGCTACGCAGCACCTCGGTCAGGGGATCGTCGAGGTCTTCGGGATGACGAAGTCGGACGAGGTTGGTAGGTGTCTCCA
TGGCGTATCGCTCTCACTGAGAGGTTCTGGCAGGCTCGACACCCGCCTCGATACGCCGCCTTCAACTCACCGTCGTCACCCAATCTCCCGCATAGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1269 bp | 422 aa | 98 | 1366 | + | No |
Chemistry : DDE
ORF sequence :
METPTNLVRLRHPEDLDDPLTEVLRSGARRLLAQAVEMEADAFLSAMQDLRLQDGRARLVRHGHGPERAIQTGIGPVPVARVRVRDRGASGSEDRVRFTS
TLLPKWARRTRSLDALLPVLYLRGISTGDFQDALAALLGRDAPNLSPAVIARLTATWADEYVRWQGRDLSARRYAYVWADGVYLQARMAEQADCMLVLIG
ATPEGKKELVGFQVGVRESVQSWRELLVDVKRRGLSIAPEIAVGDGALGFWRALDEVFPGTAHQRCWVHKTANVLDKVPKSVQPAMKADLREIHGAPTRA
AAEAALAVFVEKYGAKYPRAAACLTKDRDRLLAFYDFPAEHWDHLRSSNPIESVFATVRHRTVRTKGALSATTAKLMVFKLVMAASKTWRRLKGENQLPK
VVAGVIFRDGTEVAASPDHRAA
TLLPKWARRTRSLDALLPVLYLRGISTGDFQDALAALLGRDAPNLSPAVIARLTATWADEYVRWQGRDLSARRYAYVWADGVYLQARMAEQADCMLVLIG
ATPEGKKELVGFQVGVRESVQSWRELLVDVKRRGLSIAPEIAVGDGALGFWRALDEVFPGTAHQRCWVHKTANVLDKVPKSVQPAMKADLREIHGAPTRA
AAEAALAVFVEKYGAKYPRAAACLTKDRDRLLAFYDFPAEHWDHLRSSNPIESVFATVRHRTVRTKGALSATTAKLMVFKLVMAASKTWRRLKGENQLPK
VVAGVIFRDGTEVAASPDHRAA
Blast result :
Comments
ISMra3 is 96% aa similar to ISMex3.
References
1] Ming-Chun Lee and David Robinson (2009) Direct submission.
2]Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kiss,H., Brettin,T., Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Marx,C.J. and Richardson,P. (2008) Direct submission GenBank.
2]Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kiss,H., Brettin,T., Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Marx,C.J. and Richardson,P. (2008) Direct submission GenBank.