ISMra3

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010505 ND Methylobacterium radiotolerans
Methylobacterium radiotolerans JCM 2831
DNA section
IS Length : 1398 bp

Ends


IR Length : 23/29

IRL : GAGCTATGCAGGAATTTAGGTGACGGAGGCGGTCAGGCGGCGCGGTGATC
IRR : GAGCTATGCGGGAGATTGGGTGACGACGGTGAGTTGAAGGCGGCGTATCG

Insertion site


Left flankDirect repeatRight flankDR Length
ACGTGCCCGTCCTCGTGACCACACGCCGG9

DNA sequence

GAGCTATGCAGGAATTTAGGTGACGGAGGCGGTCAGGCGGCGCGGTGATCTGGGCTCGCGGCGACCTCGGTTCCATCGCGGAAGATGACGCCGGCCACGA
CCTTCGGCAACTGGTTTTCGCCCTTCAGCCGGCGCCAGGTCTTTGACGCCGCCATCACCAGCTTGAACACCATCAGCTTGGCGGTCGTGGCCGAGAGCGC
CCCCTTGGTCCGCACGGTCCGATGCCGCACTGTAGCGAACACGCTCTCGATCGGGTTCGAGCTGCGCAGGTGATCCCAGTGCTCGGCCGGGAAGTCGTAG
AACGCCAACAGCCTGTCACGATCCTTGGTCAGGCAGGCAGCGGCGCGGGGGTACTTGGCCCCGTACTTCTCGACGAAGACGGCCAGCGCGGCCTCGGCCG
CCGCCCGGGTCGGCGCGCCGTGGATCTCGCGCAGGTCCGCCTTCATCGCCGGCTGGACGGACTTCGGCACCTTGTCGAGGACGTTGGCCGTCTTGTGGAC
CCAACACCGTTGATGGGCCGTGCCGGGGAAGACCTCGTCCAGCGCCCGCCAGAAGCCGAGAGCGCCGTCGCCGACCGCGATCTCGGGCGCGATCGACAGC
CCGCGCCGCTTCACGTCGACGAGCAGCTCCCGCCAGCTCTGGACGCTCTCGCGCACACCCACCTGGAACCCGACGAGTTCCTTCTTGCCCTCGGGCGTCG
CCCCGATCAGCACGAGCATGCAGTCTGCCTGCTCGGCCATCCGCGCCTGCAGATAGACGCCGTCGGCCCAGACGTAGGCGTAGCGGCGCGCCGAGAGATC
GCGGCCCTGCCAGCGGACGTACTCATCCGCCCACGTCGCCGTCAGCCGGGCGATGACGGCCGGCGACAGGTTCGGGGCGTCACGACCCAAGAGGGCTGCC
AGCGCGTCCTGGAAGTCGCCGGTCGAGATGCCGCGCAGGTACAGCACCGGCAGCAGCGCATCCAGGCTGCGGGTGCGCCGCGCCCACTTCGGTAGGAGGG
TCGAGGTGAACCGGACCCGGTCCTCCGACCCGCTCGCACCGCGATCCCGCACACGGACCCGTGCGACCGGCACCGGGCCGATGCCGGTCTGGATCGCCCG
CTCCGGCCCGTGACCGTGCCGCACCAGCCGAGCCCGTCCATCCTGCAGTCGCAGGTCCTGCATCGCGCTCAAGAACGCGTCCGCCTCCATCTCGACAGCT
TGAGCGAGCAGGCGGCGAGCGCCGCTACGCAGCACCTCGGTCAGGGGATCGTCGAGGTCTTCGGGATGACGAAGTCGGACGAGGTTGGTAGGTGTCTCCA
TGGCGTATCGCTCTCACTGAGAGGTTCTGGCAGGCTCGACACCCGCCTCGATACGCCGCCTTCAACTCACCGTCGTCACCCAATCTCCCGCATAGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1269 bp422 aa981366+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

METPTNLVRLRHPEDLDDPLTEVLRSGARRLLAQAVEMEADAFLSAMQDLRLQDGRARLVRHGHGPERAIQTGIGPVPVARVRVRDRGASGSEDRVRFTS
TLLPKWARRTRSLDALLPVLYLRGISTGDFQDALAALLGRDAPNLSPAVIARLTATWADEYVRWQGRDLSARRYAYVWADGVYLQARMAEQADCMLVLIG
ATPEGKKELVGFQVGVRESVQSWRELLVDVKRRGLSIAPEIAVGDGALGFWRALDEVFPGTAHQRCWVHKTANVLDKVPKSVQPAMKADLREIHGAPTRA
AAEAALAVFVEKYGAKYPRAAACLTKDRDRLLAFYDFPAEHWDHLRSSNPIESVFATVRHRTVRTKGALSATTAKLMVFKLVMAASKTWRRLKGENQLPK
VVAGVIFRDGTEVAASPDHRAA

 

Blast result :
Comments
ISMra3 is 96% aa similar to ISMex3.
References
1] Ming-Chun Lee and David Robinson (2009) Direct submission.

2]Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kiss,H., Brettin,T., Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Marx,C.J. and Richardson,P. (2008) Direct submission GenBank.