ISMno19
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_011892 | ND | Methylobacterium nodulans | Methylobacterium nodulans ORS 2060 plasmid pMNOD01 |
DNA section
IS Length : 1138 bp
Ends
IR Length : 20/26
IRL : GTGCACTGACGCATTCAGAGGATTCACCTCGGCCGTGAGCCGTGCGAGTC
IRR : GTGCACTGACTCAAACAGATGGTGCAGCATTGCGGTTGACGGCGTCGAAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTCAACGACC | TA | GCGAGTTTCG | 2 |
DNA sequence
GTGCACTGACGCATTCAGAGGATTCACCTCGGCCGTGAGCCGTGCGAGTCTGAAGGCATGGCTCAGACCGTCTGTGTGATCCCGAGTGACGCCGATCTGG
CGCGCCTGTCGGCCATCGTCAATGACCGCGCTCGTCCCCTCAAGCACCTCCAGTGCGCCCACATCATCCTGCTCTCGGCCGAGCGCTTGGCTGTCCTGGA
GGTTGCCCAGCGGGCGGGCGTCAGCCGACCCGCCGTCTGGCGCTGGCAGCAACGCTACGCCGAGGAGGGCGTAGACGGCCTCTTGCGCGACAAGACCCGC
CCGCCCGGCAAGCCGCCCCACTCCACCGACACGGTCGCCGAGGTTCTGGCGCTGACCTGCTCCGAACCGCCCGGCGCGGTCACCCACTGGACCGGCCGCG
CCGTCGCTGACACGGTCGGGATCTCACTGCGCTCCGTCCAGCGCATCTGGGACGCGCATCGCCTGCAGCCGCACCGGGTGCGCAGCTTCAAGCGCTCCTC
CGATCCCGCCTTCGCCGAGAAGGTGGAGGACATTGTCGGCCTGGACATGGACCCGCCGCGCCATGCGGTCGTGCTCTCGCTGGACGAGACGTCCCAGATC
CAGGCGCTGGAACGCACCCGCCCCAGCCGAGCTGTGAAGCCGGGTCGGCCCGAGACCCAGACCCACGACGATCACCGGCACGGCACGACCACGCTGTTTG
CAGCCCTCAACGTCCTGGAGGGCACCGTGATCGGCCGCTGTATGCAGCGGCATCGCCATGACGAGTTCCTGCGCTTCCTCAACACCATCGAGGCGGCGGT
GCCAGGAGGCGAAGCTGATCCACGTGATCCTGGACAACTATGCTACCCACAAGCACCCGAAAGTGCGCGCTTGGCTGGCGCGGCATCCGCGTTGGACCTT
CCACTTCTTCCCGACCTCTGGCTCGTGGATAATGCTGTTGAGGGCTTCTTCTCGGCTCTCACCCAGCGACGGCTCAGGCGTGGCAGCTTCAGCGGGATCG
TGGATCTCCAGGCGGCGATCAACCGCTCCATCGCCGAGCACAACGACAGGCCGAAGCCTTTCGTCTGGACCAAGCCGGCCGCGGCCATCTTCGACGCCGT
CAACCGCAATGCTGCACCATCTGTTTGAGTCAGTGCAC
CGCGCCTGTCGGCCATCGTCAATGACCGCGCTCGTCCCCTCAAGCACCTCCAGTGCGCCCACATCATCCTGCTCTCGGCCGAGCGCTTGGCTGTCCTGGA
GGTTGCCCAGCGGGCGGGCGTCAGCCGACCCGCCGTCTGGCGCTGGCAGCAACGCTACGCCGAGGAGGGCGTAGACGGCCTCTTGCGCGACAAGACCCGC
CCGCCCGGCAAGCCGCCCCACTCCACCGACACGGTCGCCGAGGTTCTGGCGCTGACCTGCTCCGAACCGCCCGGCGCGGTCACCCACTGGACCGGCCGCG
CCGTCGCTGACACGGTCGGGATCTCACTGCGCTCCGTCCAGCGCATCTGGGACGCGCATCGCCTGCAGCCGCACCGGGTGCGCAGCTTCAAGCGCTCCTC
CGATCCCGCCTTCGCCGAGAAGGTGGAGGACATTGTCGGCCTGGACATGGACCCGCCGCGCCATGCGGTCGTGCTCTCGCTGGACGAGACGTCCCAGATC
CAGGCGCTGGAACGCACCCGCCCCAGCCGAGCTGTGAAGCCGGGTCGGCCCGAGACCCAGACCCACGACGATCACCGGCACGGCACGACCACGCTGTTTG
CAGCCCTCAACGTCCTGGAGGGCACCGTGATCGGCCGCTGTATGCAGCGGCATCGCCATGACGAGTTCCTGCGCTTCCTCAACACCATCGAGGCGGCGGT
GCCAGGAGGCGAAGCTGATCCACGTGATCCTGGACAACTATGCTACCCACAAGCACCCGAAAGTGCGCGCTTGGCTGGCGCGGCATCCGCGTTGGACCTT
CCACTTCTTCCCGACCTCTGGCTCGTGGATAATGCTGTTGAGGGCTTCTTCTCGGCTCTCACCCAGCGACGGCTCAGGCGTGGCAGCTTCAGCGGGATCG
TGGATCTCCAGGCGGCGATCAACCGCTCCATCGCCGAGCACAACGACAGGCCGAAGCCTTTCGTCTGGACCAAGCCGGCCGCGGCCATCTTCGACGCCGT
CAACCGCAATGCTGCACCATCTGTTTGAGTCAGTGCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1071 bp | 356 aa | 58 | 1128 | + | No |
Chemistry : DDE
ORF sequence :
MAQTVCVIPSDADLARLSAIVNDRARPLKHLQCAHIILLSAERLAVLEVAQRAGVSRPAVWRWQQRYAEEGVDGLLRDKTRPPGKPPHSTDTVAEVLALT
CSEPPGAVTHWTGRAVADTVGISLRSVQRIWDAHRLQPHRVRSFKRSSDPAFAEKVEDIVGLDMDPPRHAVVLSLDETSQIQALERTRPSRAVKPGRPET
QTHDDHRHGTTTLFAALNVLEGTVIGRCMQRHRHDEFLRFLNTIEAAVPGGEADPRDPGQLCYPQAPESARLAGAASALDLPLLPDLWLVDNAVEGFFSA
LTQRRLRRGSFSGIVDLQAAINRSIAEHNDRPKPFVWTKPAAAIFDAVNRNAAPSV
CSEPPGAVTHWTGRAVADTVGISLRSVQRIWDAHRLQPHRVRSFKRSSDPAFAEKVEDIVGLDMDPPRHAVVLSLDETSQIQALERTRPSRAVKPGRPET
QTHDDHRHGTTTLFAALNVLEGTVIGRCMQRHRHDEFLRFLNTIEAAVPGGEADPRDPGQLCYPQAPESARLAGAASALDLPLLPDLWLVDNAVEGFFSA
LTQRRLRRGSFSGIVDLQAAINRSIAEHNDRPKPFVWTKPAAAIFDAVNRNAAPSV
Blast result :
Comments
ISMno19 is 72% aa similar to ISAzba6.
References
1] Ming-Chun Lee and David Robinson, direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.