ISMno36
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_011892 | ND | Methylobacterium nodulans | Methylobacterium nodulans ORS 2060 plasmid pMNOD01 |
DNA section
IS Length : 888 bp
Ends
IR Length : 15/18
IRL : GGGTCTGTCGCAAACGCGATGACGTTCACCAGTCGTTAGGCATACCCGCC
IRR : GGGCTTGTCGCAAACTCGGGTCCAGGCCACAGAAGGGGCTCAATGGCCCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTGGAAGAGG | CCGCGTCGGA | 0 |
DNA sequence
GGGTCTGTCGCAAACGCGATGACGTTCACCAGTCGTTAGGCATACCCGCCCAGCTTGCCGCCTCCACCCCGGAGCCGGCCCATGATCCTCAACGCCCTCG
CCCTCACGCTGAAGCGACAGGCCCGCGGCGACTTCAAGGGCCGGCACGTCCAGGCAACCCTCATCGTCCAGGCCGTCTCCTGGTATCTACAGTACGCCCT
GAGCTACCGTGACATCGAGGAGATGCTGCTGGAGCGCGGGTTGAAGGTGGACCACTCCACCATCAATCGCTGGGTGCTCGCCTATGCACCCGCCCTCGAG
CGCCGGCTGCGCATGTTCCGCAAGCCGCATTGCGGGTCCGTGCGCGTCGACGAAACGGACATCAAGATCCTCGGCCAGTGGCGGTATCTCTACCGAGCCA
TCGACAAGCACGGCGAGCCGGTCGACTTCCTGCTCACCGCCCAGCGCGATCTGGACGCGGCCAAGCGGTTCTTCCGCAAGATGCTGCAGGATCAGCCGTT
GCTCGCCCCCGACCGGATCGGCACCGATGGCGCCGGCCCGTACCCGCCGGCCATTGTTGAGAGCCGCAAGGAGGGCCTGCTGCCGCGCACGCCCATCCAC
CACGTCACCAAGCACCTGCAGCAGGGGATCGAGAGCGACCACTTCCGGGTCAAGCGGCCGATGCCGCGGGTGGGCGGGTTCCGCTCCTTCACCACGGCCC
GGCGCACGATCCAGGGCGTCAAAGCCATGCTGTGGCTGCGCACGGGCTTCGGGTTTTCAGGCGCGTGGACCGTGCGCGAGCAGAATCAGCTGCTTGCGCA
TTGCTTCGGACTTCCCGTCGCGAACAAAGCATGAAAGCGGGGCCATTGAGCCCCTTCTGTGGCCTGGACCCGAGTTTGCGACAAGCCC
CCCTCACGCTGAAGCGACAGGCCCGCGGCGACTTCAAGGGCCGGCACGTCCAGGCAACCCTCATCGTCCAGGCCGTCTCCTGGTATCTACAGTACGCCCT
GAGCTACCGTGACATCGAGGAGATGCTGCTGGAGCGCGGGTTGAAGGTGGACCACTCCACCATCAATCGCTGGGTGCTCGCCTATGCACCCGCCCTCGAG
CGCCGGCTGCGCATGTTCCGCAAGCCGCATTGCGGGTCCGTGCGCGTCGACGAAACGGACATCAAGATCCTCGGCCAGTGGCGGTATCTCTACCGAGCCA
TCGACAAGCACGGCGAGCCGGTCGACTTCCTGCTCACCGCCCAGCGCGATCTGGACGCGGCCAAGCGGTTCTTCCGCAAGATGCTGCAGGATCAGCCGTT
GCTCGCCCCCGACCGGATCGGCACCGATGGCGCCGGCCCGTACCCGCCGGCCATTGTTGAGAGCCGCAAGGAGGGCCTGCTGCCGCGCACGCCCATCCAC
CACGTCACCAAGCACCTGCAGCAGGGGATCGAGAGCGACCACTTCCGGGTCAAGCGGCCGATGCCGCGGGTGGGCGGGTTCCGCTCCTTCACCACGGCCC
GGCGCACGATCCAGGGCGTCAAAGCCATGCTGTGGCTGCGCACGGGCTTCGGGTTTTCAGGCGCGTGGACCGTGCGCGAGCAGAATCAGCTGCTTGCGCA
TTGCTTCGGACTTCCCGTCGCGAACAAAGCATGAAAGCGGGGCCATTGAGCCCCTTCTGTGGCCTGGACCCGAGTTTGCGACAAGCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
753 bp | 250 aa | 82 | 834 | + | No |
Chemistry : DDE
ORF sequence :
MILNALALTLKRQARGDFKGRHVQATLIVQAVSWYLQYALSYRDIEEMLLERGLKVDHSTINRWVLAYAPALERRLRMFRKPHCGSVRVDETDIKILGQW
RYLYRAIDKHGEPVDFLLTAQRDLDAAKRFFRKMLQDQPLLAPDRIGTDGAGPYPPAIVESRKEGLLPRTPIHHVTKHLQQGIESDHFRVKRPMPRVGGF
RSFTTARRTIQGVKAMLWLRTGFGFSGAWTVREQNQLLAHCFGLPVANKA
RYLYRAIDKHGEPVDFLLTAQRDLDAAKRFFRKMLQDQPLLAPDRIGTDGAGPYPPAIVESRKEGLLPRTPIHHVTKHLQQGIESDHFRVKRPMPRVGGF
RSFTTARRTIQGVKAMLWLRTGFGFSGAWTVREQNQLLAHCFGLPVANKA
Blast result :
Comments
ISMno36 is 94% aa similar to ISMtsp1.
References
1] Ming-Chun Lee and David Robinson (2009) Direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission Genbank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission Genbank.