ISMno12
- Family IS5
- Group IS1031
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_011892 | ND | Methylobacterium nodulans | Methylobacterium nodulans ORS 2060 Methylobacterium nodulans ORS 2060 plasmid pMNOD01 |
DNA section
IS Length : 924 bp
Ends
IR Length : 19
IRL : GAGTCCGTTGGGAAAGGGTGGCCAAGAGAAAATGCGGGATGATAGAGCAT
IRR : GAGTCCGTTGGGAAAGGGTCATTTCATAGTGATTGACGCGAGAAGCCGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CAGTCCACAC | TTA | GAGCCGTGCC | 3 |
AGCTTAGGGC | TTA | GAGCAACTTC | 3 |
CTTGAAGGAC | TCA | AGGGGAGACA | 3 |
GCCCGCCACC | TGA | GTGACCTTGG | 3 |
TCAAGCCATC | TGA | GAGCCGCAAT | 3 |
GATCTCAACC | TTA | GTCCCAACGC | 3 |
GATGAAAGCC | TAA | GGCGTATAAG | 3 |
GGCGACACTC | TTA | GACATCAGCG | 3 |
ATCGACCGCC | TTA | GAGAAGGGCG | 3 |
GGCGCCGTTC | TTA | GATCGGCGTG | 3 |
GGCCGGTACC | TTA | GTGGCCTGCA | 3 |
GGCACGGCTC | TAA | GCCCGGAGTG | 3 |
ACCAAAGATC | TAA | GAGCCCAACC | 3 |
ATGAATGATC | TTA | CTGAGCGCTG | 3 |
GATCTCAACC | TTA | GTCCCAACGC | 3 |
GAGAAGGCTC | TCA | GAGCGCTGTA | 3 |
TCCAGCCATCTTA | TCAGACCTGGGGG | 0 |
DNA sequence
GAGTCCGTTGGGAAAGGGTGGCCAAGAGAAAATGCGGGATGATAGAGCATGTCTGCTCGTCTCGAATGGATGAATGGCCCCTCCTTGGTCTGGACCGCTG
CAAATCGGCCGCGCTATGATCGTCGCAGCCAGAGATACCCGAGTGATATGACGAACGACGAGTGGCTCACCCTGGAGCCACTGCTTCCTGTCGCGGAGGG
GATCGGGCGGCCCCGGACCTATCCTATTCGGGACATCATGAACGGCATCCGCTACGTGCAGCGGTACGGCATTCCCTGGGATGCCATGCCAAAGGATCTG
CCGCCCGCCAGTCTCTGCTACGATTACTGGCGGTTGCTCACCGATGGCGGCCACATGGACCGGATCAACCATCATCTCGTGATGAGGGATCGTGAGAAGT
CCGGGAAAGAAGCCAGTCCAACGCTGGCGATTGTGGATGCCCAGGCGGTGAAGTGTGACGCCCCGCAAGGCGAGCGCGGGTACGATGCGGCGAAACAAGT
GCTGGGGCGCAAGCGGCATCTGGCGGTCGACAGCGACGGACGCCTGCTTGCGGTGATGATCACTCCGGCCAACGTTCAGGATCAAGAGGGCGGGATCCCG
CTCGTCAAGCGCTTGGTTCGTCTCTGTCCCTGGATCAAGACAATCGTGGTGGACGGTGGGTACAAGGCCCGTTTCATTGAGGCGGTTCAGGCTGGCACGA
GCCGTGTCGTGGAAGTGGTCGTACGGCCGCAATTTGGGAAGGGCTTTGTGCTTCTGCCGAAACGATGGCGGATTGAGCAAAGCATCGGCGCTCTCACGGT
GTCGCGCCGTCTCAAGCTGGATTACGATACGCTGCTTCACATCTCGGCGGCGGCTATGCTTTTCGCCTCTATAACTCGGCTTCTCGCGTCAATCACTATG
AAATGACCCTTTCCCAACGGACTC
CAAATCGGCCGCGCTATGATCGTCGCAGCCAGAGATACCCGAGTGATATGACGAACGACGAGTGGCTCACCCTGGAGCCACTGCTTCCTGTCGCGGAGGG
GATCGGGCGGCCCCGGACCTATCCTATTCGGGACATCATGAACGGCATCCGCTACGTGCAGCGGTACGGCATTCCCTGGGATGCCATGCCAAAGGATCTG
CCGCCCGCCAGTCTCTGCTACGATTACTGGCGGTTGCTCACCGATGGCGGCCACATGGACCGGATCAACCATCATCTCGTGATGAGGGATCGTGAGAAGT
CCGGGAAAGAAGCCAGTCCAACGCTGGCGATTGTGGATGCCCAGGCGGTGAAGTGTGACGCCCCGCAAGGCGAGCGCGGGTACGATGCGGCGAAACAAGT
GCTGGGGCGCAAGCGGCATCTGGCGGTCGACAGCGACGGACGCCTGCTTGCGGTGATGATCACTCCGGCCAACGTTCAGGATCAAGAGGGCGGGATCCCG
CTCGTCAAGCGCTTGGTTCGTCTCTGTCCCTGGATCAAGACAATCGTGGTGGACGGTGGGTACAAGGCCCGTTTCATTGAGGCGGTTCAGGCTGGCACGA
GCCGTGTCGTGGAAGTGGTCGTACGGCCGCAATTTGGGAAGGGCTTTGTGCTTCTGCCGAAACGATGGCGGATTGAGCAAAGCATCGGCGCTCTCACGGT
GTCGCGCCGTCTCAAGCTGGATTACGATACGCTGCTTCACATCTCGGCGGCGGCTATGCTTTTCGCCTCTATAACTCGGCTTCTCGCGTCAATCACTATG
AAATGACCCTTTCCCAACGGACTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
868 bp | 285 aa | 39 | 906 | + | No |
Chemistry : DDE
ORF sequence :
MSARLEWMNGPSLVWTAANRPRYDRRSQRYPSDMTNDEWLTLEPLLPVAEGIGRPRTYPIRDIMNGIRYVQRYGIPWDAMPKDLPPASLCYDYWRLLTDG
GHMDRINHHLVMRDREKSGKEASPTLAIVDAQAVKCDAPQGERGYDAAKQVLGRKRHLAVDSDGRLLAVMITPANVQDQEGGIPLVKRLVRLCPWIKTIV
VDGGYKARFIEAVQAGTSRVVEVVVRPQFGKGFVLLPKRWRIEQSIGALTVSRRLKLDYDTLLHISAAAMLFASITRLLASITMK
GHMDRINHHLVMRDREKSGKEASPTLAIVDAQAVKCDAPQGERGYDAAKQVLGRKRHLAVDSDGRLLAVMITPANVQDQEGGIPLVKRLVRLCPWIKTIV
VDGGYKARFIEAVQAGTSRVVEVVVRPQFGKGFVLLPKRWRIEQSIGALTVSRRLKLDYDTLLHISAAAMLFASITRLLASITMK
Blast result :
Comments
ISMno12 is 59% aa similar to ISMex40.
References
1] Ming-Chun Lee and David Robinson, direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.