ISMno12

  • Family IS5
  • Group IS1031
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_011892 ND Methylobacterium nodulans
Methylobacterium nodulans ORS 2060
Methylobacterium nodulans ORS 2060 plasmid pMNOD01
DNA section
IS Length : 924 bp

Ends


IR Length : 19

IRL : GAGTCCGTTGGGAAAGGGTGGCCAAGAGAAAATGCGGGATGATAGAGCAT
IRR : GAGTCCGTTGGGAAAGGGTCATTTCATAGTGATTGACGCGAGAAGCCGAG

Insertion site


Left flankDirect repeatRight flankDR Length
CAGTCCACACTTAGAGCCGTGCC3
AGCTTAGGGCTTAGAGCAACTTC3
CTTGAAGGACTCAAGGGGAGACA3
GCCCGCCACCTGAGTGACCTTGG3
TCAAGCCATCTGAGAGCCGCAAT3
GATCTCAACCTTAGTCCCAACGC3
GATGAAAGCCTAAGGCGTATAAG3
GGCGACACTCTTAGACATCAGCG3
ATCGACCGCCTTAGAGAAGGGCG3
GGCGCCGTTCTTAGATCGGCGTG3
GGCCGGTACCTTAGTGGCCTGCA3
GGCACGGCTCTAAGCCCGGAGTG3
ACCAAAGATCTAAGAGCCCAACC3
ATGAATGATCTTACTGAGCGCTG3
GATCTCAACCTTAGTCCCAACGC3
GAGAAGGCTCTCAGAGCGCTGTA3
TCCAGCCATCTTATCAGACCTGGGGG0

DNA sequence

GAGTCCGTTGGGAAAGGGTGGCCAAGAGAAAATGCGGGATGATAGAGCATGTCTGCTCGTCTCGAATGGATGAATGGCCCCTCCTTGGTCTGGACCGCTG
CAAATCGGCCGCGCTATGATCGTCGCAGCCAGAGATACCCGAGTGATATGACGAACGACGAGTGGCTCACCCTGGAGCCACTGCTTCCTGTCGCGGAGGG
GATCGGGCGGCCCCGGACCTATCCTATTCGGGACATCATGAACGGCATCCGCTACGTGCAGCGGTACGGCATTCCCTGGGATGCCATGCCAAAGGATCTG
CCGCCCGCCAGTCTCTGCTACGATTACTGGCGGTTGCTCACCGATGGCGGCCACATGGACCGGATCAACCATCATCTCGTGATGAGGGATCGTGAGAAGT
CCGGGAAAGAAGCCAGTCCAACGCTGGCGATTGTGGATGCCCAGGCGGTGAAGTGTGACGCCCCGCAAGGCGAGCGCGGGTACGATGCGGCGAAACAAGT
GCTGGGGCGCAAGCGGCATCTGGCGGTCGACAGCGACGGACGCCTGCTTGCGGTGATGATCACTCCGGCCAACGTTCAGGATCAAGAGGGCGGGATCCCG
CTCGTCAAGCGCTTGGTTCGTCTCTGTCCCTGGATCAAGACAATCGTGGTGGACGGTGGGTACAAGGCCCGTTTCATTGAGGCGGTTCAGGCTGGCACGA
GCCGTGTCGTGGAAGTGGTCGTACGGCCGCAATTTGGGAAGGGCTTTGTGCTTCTGCCGAAACGATGGCGGATTGAGCAAAGCATCGGCGCTCTCACGGT
GTCGCGCCGTCTCAAGCTGGATTACGATACGCTGCTTCACATCTCGGCGGCGGCTATGCTTTTCGCCTCTATAACTCGGCTTCTCGCGTCAATCACTATG
AAATGACCCTTTCCCAACGGACTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
868 bp285 aa39906+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSARLEWMNGPSLVWTAANRPRYDRRSQRYPSDMTNDEWLTLEPLLPVAEGIGRPRTYPIRDIMNGIRYVQRYGIPWDAMPKDLPPASLCYDYWRLLTDG
GHMDRINHHLVMRDREKSGKEASPTLAIVDAQAVKCDAPQGERGYDAAKQVLGRKRHLAVDSDGRLLAVMITPANVQDQEGGIPLVKRLVRLCPWIKTIV
VDGGYKARFIEAVQAGTSRVVEVVVRPQFGKGFVLLPKRWRIEQSIGALTVSRRLKLDYDTLLHISAAAMLFASITRLLASITMK

 

Blast result :
Comments
ISMno12 is 59% aa similar to ISMex40.
References
1] Ming-Chun Lee and David Robinson, direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.