ISMtsp19
- Family IS701
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010511 | ND | Methylobacterium sp. | Methylobacterium sp. 4-46 |
DNA section
IS Length : 1486 bp
Ends
IR Length : 21/22
IRL : TAGCATTACAGTTGCGTTTTCGGCGAGGTTCTGACTCTTTGCGTCGCCAT
IRR : TAGCATTACAGTTGCGTTTTTGTGCGTGCTGGCTGACGGCTGGCCCGGCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAACCAAGTC | ACCGGGGCAT | 0 |
DNA sequence
TAGCATTACAGTTGCGTTTTCGGCGAGGTTCTGACTCTTTGCGTCGCCATGATTCGCGCATCATGGACGTCGGAGACTTCGGTCAAGGCGACGCTGGAGT
TGTGGGCCTCGTCGCTCCGGGAGGTGAAGGGGCGCATGCGGCCTCTGTTCACCCAGCGCCGGGTCGCCGCCTCGGCCGGAGCGTTCTTGGATGGACTGCT
CGGTGCAGAGCGGCGCAAGACGGGTTGGATGCGGGCGGAAGCCGCGGGCGATCCCGGGCCCTGGCGCCAGCAGGCGGTGCTTGGGCGCGGACGTTGGGAC
GCCGACGCTCTGCGCGACGTGGTGCGTGACTATGCTCTGGAGACGCTGGCCGACCCGGACGCGGTTCTGGTTCTCGACGAGACCGGCTTTCTGAAGCAGG
GCAAGGCCTCGTGCGGAGTGCATCGCCAGTACACCGGCTCAGCCGGCAAGATCACGAACTGTCAGATCGGCGTGTTCGCGGCCTATGTCTCACGGCACGG
TCATGCCTTCATCGATCGAGCCTTGTACCTACCCCAGACCTGGACCTCGGATCCAGCCCGGCTGGCCGCCGCCCACGCGCCGAAGGGGACGACCTTCGCG
ACCAAGCCGGGATTGGCTCTGGCGATGATCGAGCGGGCGAGGGCTGCCGGCGTGCCGTTTTCCTGGGTAGCGGCCGACACCGTCTACGGGGTCGGCGAGA
TCGAGATGGCCCTGCGGCGGGCGGGCAAGGGTTACGTGCTCGGGGTGAAGAGCGATCACGCGTTCAACTCCTGGGCCGGCAAGCCGCTGGTGGCCGGCAC
CGCCGAGACGATCGCGGATGGCCTTGCTCCGTCGGCCTGGACGCGCCTGTCGGCGGGCGACGGGACGAGGGGCGCGAGGCTGTACGACTGGGCCTACTGC
GAACTGGCCGACCTCGCTGGTGCCGCCTACGACCAGACCGGCCTGTGGACGCGGGGGCTCCTGATCCGCCGCAGCCTGAGCGATGGCGAGCGGGCCTACT
TCACGACCTGGTGCCCGGCCGGCACGCCGATCCAGATCCTGGTCAGCGTCGAGGGACGGCGTTGGAGCATCGAGGACGCGTTCGAGACGGCCAAGACCGA
CCTCGGGCTGACACACAATGAGACCCGCTCTTGGCACGGCTGGCATCGGCACGTCAGCCTGGTGATGATGGCCTTCGCCCTGCTGACGGTGATCCGCCAT
CACGCCAACGCGCCGCCCCCAAAAAGCCGAGCCCGGCCGAGACCGCGCGCCCGCTGATCCGCTGGTCGGTCCAGGAGATCCGCCGCATCGCGGTGCGGAT
GGCACAGCGGCGCATTCAACCCGCTCACGTCATCGCATGGTCGCTCTGGCGACGGGCGCATCAGGCGGCCGCCCGCCAGGCACATCTCAAACAGCGCGCG
TCAGACGCCAAATGGCGGCGGCAGCGCCGGACGCCAAGCCGGGCCAGCCGTCAGCCAGCACGCACAAAAACGCAACTGTAATGCTA
TGTGGGCCTCGTCGCTCCGGGAGGTGAAGGGGCGCATGCGGCCTCTGTTCACCCAGCGCCGGGTCGCCGCCTCGGCCGGAGCGTTCTTGGATGGACTGCT
CGGTGCAGAGCGGCGCAAGACGGGTTGGATGCGGGCGGAAGCCGCGGGCGATCCCGGGCCCTGGCGCCAGCAGGCGGTGCTTGGGCGCGGACGTTGGGAC
GCCGACGCTCTGCGCGACGTGGTGCGTGACTATGCTCTGGAGACGCTGGCCGACCCGGACGCGGTTCTGGTTCTCGACGAGACCGGCTTTCTGAAGCAGG
GCAAGGCCTCGTGCGGAGTGCATCGCCAGTACACCGGCTCAGCCGGCAAGATCACGAACTGTCAGATCGGCGTGTTCGCGGCCTATGTCTCACGGCACGG
TCATGCCTTCATCGATCGAGCCTTGTACCTACCCCAGACCTGGACCTCGGATCCAGCCCGGCTGGCCGCCGCCCACGCGCCGAAGGGGACGACCTTCGCG
ACCAAGCCGGGATTGGCTCTGGCGATGATCGAGCGGGCGAGGGCTGCCGGCGTGCCGTTTTCCTGGGTAGCGGCCGACACCGTCTACGGGGTCGGCGAGA
TCGAGATGGCCCTGCGGCGGGCGGGCAAGGGTTACGTGCTCGGGGTGAAGAGCGATCACGCGTTCAACTCCTGGGCCGGCAAGCCGCTGGTGGCCGGCAC
CGCCGAGACGATCGCGGATGGCCTTGCTCCGTCGGCCTGGACGCGCCTGTCGGCGGGCGACGGGACGAGGGGCGCGAGGCTGTACGACTGGGCCTACTGC
GAACTGGCCGACCTCGCTGGTGCCGCCTACGACCAGACCGGCCTGTGGACGCGGGGGCTCCTGATCCGCCGCAGCCTGAGCGATGGCGAGCGGGCCTACT
TCACGACCTGGTGCCCGGCCGGCACGCCGATCCAGATCCTGGTCAGCGTCGAGGGACGGCGTTGGAGCATCGAGGACGCGTTCGAGACGGCCAAGACCGA
CCTCGGGCTGACACACAATGAGACCCGCTCTTGGCACGGCTGGCATCGGCACGTCAGCCTGGTGATGATGGCCTTCGCCCTGCTGACGGTGATCCGCCAT
CACGCCAACGCGCCGCCCCCAAAAAGCCGAGCCCGGCCGAGACCGCGCGCCCGCTGATCCGCTGGTCGGTCCAGGAGATCCGCCGCATCGCGGTGCGGAT
GGCACAGCGGCGCATTCAACCCGCTCACGTCATCGCATGGTCGCTCTGGCGACGGGCGCATCAGGCGGCCGCCCGCCAGGCACATCTCAAACAGCGCGCG
TCAGACGCCAAATGGCGGCGGCAGCGCCGGACGCCAAGCCGGGCCAGCCGTCAGCCAGCACGCACAAAAACGCAACTGTAATGCTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1209 bp | 402 aa | 49 | 1257 | + | No |
Chemistry : DDE
ORF sequence :
MIRASWTSETSVKATLELWASSLREVKGRMRPLFTQRRVAASAGAFLDGLLGAERRKTGWMRAEAAGDPGPWRQQAVLGRGRWDADALRDVVRDYALETL
ADPDAVLVLDETGFLKQGKASCGVHRQYTGSAGKITNCQIGVFAAYVSRHGHAFIDRALYLPQTWTSDPARLAAAHAPKGTTFATKPGLALAMIERARAA
GVPFSWVAADTVYGVGEIEMALRRAGKGYVLGVKSDHAFNSWAGKPLVAGTAETIADGLAPSAWTRLSAGDGTRGARLYDWAYCELADLAGAAYDQTGLW
TRGLLIRRSLSDGERAYFTTWCPAGTPIQILVSVEGRRWSIEDAFETAKTDLGLTHNETRSWHGWHRHVSLVMMAFALLTVIRHHANAPPPKSRARPRPR
AR
ADPDAVLVLDETGFLKQGKASCGVHRQYTGSAGKITNCQIGVFAAYVSRHGHAFIDRALYLPQTWTSDPARLAAAHAPKGTTFATKPGLALAMIERARAA
GVPFSWVAADTVYGVGEIEMALRRAGKGYVLGVKSDHAFNSWAGKPLVAGTAETIADGLAPSAWTRLSAGDGTRGARLYDWAYCELADLAGAAYDQTGLW
TRGLLIRRSLSDGERAYFTTWCPAGTPIQILVSVEGRRWSIEDAFETAKTDLGLTHNETRSWHGWHRHVSLVMMAFALLTVIRHHANAPPPKSRARPRPR
AR
Blast result :
Comments
ISMtsp19 is 84% aa similar to ISRm31.
References
1] Ming-Chun Lee and David Robinson (2009) Direct submission.
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E.,Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T.,Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M.,Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2008) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E.,Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T.,Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M.,Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2008) Direct submission GenBank.