ISMpo9
- Family IS701
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_010725 | ND | Methylobacterium populi | Methylobacterium populi BJ001 |
DNA section
IS Length : 1413 bp
Ends
IR Length : 20/21
IRL : CACTACCTGGGCACTTTGAGGATCGTCGGGCGTTTTGATCCTGCGGTTAC
IRR : CATTACCTGGGCACTTTGAGGTCAGACGGCAGCCGGAAGCGGCGCCGGCA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GTAACAGCCT | CTAt/g | GATCGCCCAC | 6 |
DNA sequence
CACTACCTGGGCACTTTGAGGATCGTCGGGCGTTTTGATCCTGCGGTTACACTGCGGGAGACGTCCATGGTCGGGAGACCGTCGGAGCAAGACCTCGATG
CGTGGCTGGCGCCGTTCCTGGCTGCGATGGGGCGCAACACGCGGCGGATCTGGGCGCCGCTGTACCTGCGCGGCCTGCTCGACCCCGGGGATCGCAAGAG
CCTGCAGCCGATGGCCGCCCGCCTCGGGCTGCCGGGCCACGACCAGCTGCAACATTTCATCGCCAGCCTGGCCTGGGACGATGGCCCTCTCTGGGCAGAG
CTGGCCCGCACCGCGGATCGGCTGGTGGGCGGGTCCGACGCCTGCTTGGTGATCGACGACACCGCCCTGCCGAAGAAGGGCATCCGCTCGGTAGGCGTAG
CGCGCCAGTACTGCGGGGCACTCGGCAAGAAGGCCAGCTGCCAGTCGCTCGTCTCCCTCACCCTGGCGCGGGACGAGGTGCCCCTGCCGGTGGGCCTGCG
CCTGTTCCTGCCGGAGGACTGGACGGCCGACCCGGCGCGGTGCGCGCTGGCTGGCGTGCCCGAGGCGGCGACCGCGCCGCAGAGCAAGGGCGAGATCGCG
CTCAGCGAACTCGACCGCTTGCAGCCCATGGGCGTGCGCTTCGGCGTGGTGCTCGCCGATGCCGGCTACGGCTGTAGTGCCGCGTTCCGGCATGGCCTCG
ACGCGCGCGGGCTGACCTGGGCGGTGGGCATCGCCAAGAACCAGAAGGTCTACGATCCCGAGGTGCGGCTCGTGCCGCCGGGTGGGCGGGCGCGCAAAGC
CGTGCCGGATCAGGAGCCGCAGAAGGCCGAGGCGGTTCTTGCCGCGCTGCCTTGGCGGCGCGTGACGTGGCGGCGGGGCACGAAGGGCGCGCTCTCGGCC
CGGTTTGCCATGGCTCGCGTGCGGGTGGGCGATGGCCCGGTCTGGGCCAACAACCGCCATCTACCGGGCGACGAGGTCTGGCTGGTGGGCGAGTGGCGCG
CCTCGGGCGAGCGCAAATTCTACCTCTCGAACCTGCCGTCCCGCACGACCCGGCGTGTCCTGGGCGGCACGATCAAGGCGCGCTGGATCCGCGAGCAGGC
CCACCAGCAGATAAAGGAGGAACTCAAGCTCGACCACTTCGAGGGCCGCTCCTGGACCGGACTGCACCGGCACGCGCTGATGACGTGCATTGCCTACGCC
TACCTGCAGGATCTGCGTTTGGCTGAGCCCTACCGGACGGATCGGGGGAAAAAAGGTCGCCAGCCTACCGGGGCCGCCGCCGTCTCCGAGCCTGCCCGCC
GTGCGTCAGGCCATCATCGGCCGACTGTTCGTGGCGCTCATCCCGCCCGTGCAATGCCCGCACTGCCGGCGCCGCTTCCGGCTGCCGTCTGACCTCAAAG
TGCCCAGGTAATG
CGTGGCTGGCGCCGTTCCTGGCTGCGATGGGGCGCAACACGCGGCGGATCTGGGCGCCGCTGTACCTGCGCGGCCTGCTCGACCCCGGGGATCGCAAGAG
CCTGCAGCCGATGGCCGCCCGCCTCGGGCTGCCGGGCCACGACCAGCTGCAACATTTCATCGCCAGCCTGGCCTGGGACGATGGCCCTCTCTGGGCAGAG
CTGGCCCGCACCGCGGATCGGCTGGTGGGCGGGTCCGACGCCTGCTTGGTGATCGACGACACCGCCCTGCCGAAGAAGGGCATCCGCTCGGTAGGCGTAG
CGCGCCAGTACTGCGGGGCACTCGGCAAGAAGGCCAGCTGCCAGTCGCTCGTCTCCCTCACCCTGGCGCGGGACGAGGTGCCCCTGCCGGTGGGCCTGCG
CCTGTTCCTGCCGGAGGACTGGACGGCCGACCCGGCGCGGTGCGCGCTGGCTGGCGTGCCCGAGGCGGCGACCGCGCCGCAGAGCAAGGGCGAGATCGCG
CTCAGCGAACTCGACCGCTTGCAGCCCATGGGCGTGCGCTTCGGCGTGGTGCTCGCCGATGCCGGCTACGGCTGTAGTGCCGCGTTCCGGCATGGCCTCG
ACGCGCGCGGGCTGACCTGGGCGGTGGGCATCGCCAAGAACCAGAAGGTCTACGATCCCGAGGTGCGGCTCGTGCCGCCGGGTGGGCGGGCGCGCAAAGC
CGTGCCGGATCAGGAGCCGCAGAAGGCCGAGGCGGTTCTTGCCGCGCTGCCTTGGCGGCGCGTGACGTGGCGGCGGGGCACGAAGGGCGCGCTCTCGGCC
CGGTTTGCCATGGCTCGCGTGCGGGTGGGCGATGGCCCGGTCTGGGCCAACAACCGCCATCTACCGGGCGACGAGGTCTGGCTGGTGGGCGAGTGGCGCG
CCTCGGGCGAGCGCAAATTCTACCTCTCGAACCTGCCGTCCCGCACGACCCGGCGTGTCCTGGGCGGCACGATCAAGGCGCGCTGGATCCGCGAGCAGGC
CCACCAGCAGATAAAGGAGGAACTCAAGCTCGACCACTTCGAGGGCCGCTCCTGGACCGGACTGCACCGGCACGCGCTGATGACGTGCATTGCCTACGCC
TACCTGCAGGATCTGCGTTTGGCTGAGCCCTACCGGACGGATCGGGGGAAAAAAGGTCGCCAGCCTACCGGGGCCGCCGCCGTCTCCGAGCCTGCCCGCC
GTGCGTCAGGCCATCATCGGCCGACTGTTCGTGGCGCTCATCCCGCCCGTGCAATGCCCGCACTGCCGGCGCCGCTTCCGGCTGCCGTCTGACCTCAAAG
TGCCCAGGTAATG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1326 bp | 441 aa | 67 | 1392 | + | No |
Chemistry : DDE
ORF sequence :
MVGRPSEQDLDAWLAPFLAAMGRNTRRIWAPLYLRGLLDPGDRKSLQPMAARLGLPGHDQLQHFIASLAWDDGPLWAELARTADRLVGGSDACLVIDDTA
LPKKGIRSVGVARQYCGALGKKASCQSLVSLTLARDEVPLPVGLRLFLPEDWTADPARCALAGVPEAATAPQSKGEIALSELDRLQPMGVRFGVVLADAG
YGCSAAFRHGLDARGLTWAVGIAKNQKVYDPEVRLVPPGGRARKAVPDQEPQKAEAVLAALPWRRVTWRRGTKGALSARFAMARVRVGDGPVWANNRHLP
GDEVWLVGEWRASGERKFYLSNLPSRTTRRVLGGTIKARWIREQAHQQIKEELKLDHFEGRSWTGLHRHALMTCIAYAYLQDLRLAEPYRTDRGKKGRQP
TGAAAVSEPARRASGHHRPTVRGAHPARAMPALPAPLPAAV
LPKKGIRSVGVARQYCGALGKKASCQSLVSLTLARDEVPLPVGLRLFLPEDWTADPARCALAGVPEAATAPQSKGEIALSELDRLQPMGVRFGVVLADAG
YGCSAAFRHGLDARGLTWAVGIAKNQKVYDPEVRLVPPGGRARKAVPDQEPQKAEAVLAALPWRRVTWRRGTKGALSARFAMARVRVGDGPVWANNRHLP
GDEVWLVGEWRASGERKFYLSNLPSRTTRRVLGGTIKARWIREQAHQQIKEELKLDHFEGRSWTGLHRHALMTCIAYAYLQDLRLAEPYRTDRGKKGRQP
TGAAAVSEPARRASGHHRPTVRGAHPARAMPALPAPLPAAV
Blast result :
Comments
ISMpo9 is 68% aa similar to ISNha2.
References
1] Ming-Chun Lee and David Robinson (2009) Direct submission.
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Marx,C. and Richardson,P. (2008) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Marx,C. and Richardson,P. (2008) Direct submission GenBank.