ISMtsp16
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010511 | ND | Methylobacterium sp. | Methylobacterium sp. 4-46 |
DNA section
IS Length : 1023 bp
Ends
IR Length : 19/26
IRL : TGTGCAGTCCCGGAGTGTGATGGTGCATCATCGGCGCTGACGCGTTTGGT
IRR : TGTATGGTCCCGGTATGAGGTGGTGCGGGTCGATTTTGAAGCGGTCTGGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GACGCGCTCG | CCTAGG | CGTTCCAGCG | 6 |
DNA sequence
TGTGCAGTCCCGGAGTGTGATGGTGCATCATCGGCGCTGACGCGTTTGGTGGAGGATGCACTATGGCAGGAGTTCTTCACGGCAGCGCCCGAACGACGCC
GCGTGTTCGAGCCGAGCTCCAAGCGTCGAAAGAAAGTAGCCGCGCCCTTGCCGCCCAGTACGGCTTGAACCCGAAGACGGTCGCCAAATGGCGCAGGCGG
GCGGTGACGACCGATGCGCCGATGGGGCCGAAGAAGCCCAGGAGCACGGTCATGACGCCGGCCGAGGAGGCGATCGTGGTCGAGTTCCGGCGGCGGACGC
TGCTGCCGCTCGATGATGTCCTGGGCTGCCTGCGCGAGACTATCCCCAGCCTGAGCCGCTCTGCCCTGCATCGATGCCTGCAACGGCATGGCATCTCCCG
CCTCCCGGCAGCCGAGACGGCGCTGACACGCAAACGCTTCAAGACCTACGACATCGGCTACGTGCATATCGACAGCTGCGAGCTGCGCCATGCCGACGGC
AAGCTGATCATGTTCCTGGCCATCGACCGCGTCTCGAAGTTCACCTACGTCGAGTTCCACGACAGCGCGGGTAAGATGGAAGGATCAGCCTTCCTGAGGA
AGGCCGTGGCAGTCTTTCCCTACAAGATACACACGGTCCTGACCGACAATGGCATGGCTTTCGCCGACCTGCCGAAGAACAGGACTGGGCCGAGTCGGCG
CTTTCTCGGTCCACATATCTTCGATCGCGTCTGTCTCGAGCACGGCATCGAGCATCGATTGACCAAGCCCTACCATCCTTGGACGAACGGTCAAGCCGAG
CGCATGAACCGGACCATCAAGGATGCGACCGTCAGAGTCTTCCACTATGAAGATCTGGAGAGCTTGAAGGCACACGTCCTGGCCTTCGTCACAGCCTACA
ACTTCGCCAAGCATCTCAAGTCGTTGCGCTGGAAGACCCCGTTCCAGAGCATCTGTCATGCCTGGACCAAAGACCCAGACCGCTTCAAAATCGACCCGCA
CCACCTCATACCGGGACCATACA
GCGTGTTCGAGCCGAGCTCCAAGCGTCGAAAGAAAGTAGCCGCGCCCTTGCCGCCCAGTACGGCTTGAACCCGAAGACGGTCGCCAAATGGCGCAGGCGG
GCGGTGACGACCGATGCGCCGATGGGGCCGAAGAAGCCCAGGAGCACGGTCATGACGCCGGCCGAGGAGGCGATCGTGGTCGAGTTCCGGCGGCGGACGC
TGCTGCCGCTCGATGATGTCCTGGGCTGCCTGCGCGAGACTATCCCCAGCCTGAGCCGCTCTGCCCTGCATCGATGCCTGCAACGGCATGGCATCTCCCG
CCTCCCGGCAGCCGAGACGGCGCTGACACGCAAACGCTTCAAGACCTACGACATCGGCTACGTGCATATCGACAGCTGCGAGCTGCGCCATGCCGACGGC
AAGCTGATCATGTTCCTGGCCATCGACCGCGTCTCGAAGTTCACCTACGTCGAGTTCCACGACAGCGCGGGTAAGATGGAAGGATCAGCCTTCCTGAGGA
AGGCCGTGGCAGTCTTTCCCTACAAGATACACACGGTCCTGACCGACAATGGCATGGCTTTCGCCGACCTGCCGAAGAACAGGACTGGGCCGAGTCGGCG
CTTTCTCGGTCCACATATCTTCGATCGCGTCTGTCTCGAGCACGGCATCGAGCATCGATTGACCAAGCCCTACCATCCTTGGACGAACGGTCAAGCCGAG
CGCATGAACCGGACCATCAAGGATGCGACCGTCAGAGTCTTCCACTATGAAGATCTGGAGAGCTTGAAGGCACACGTCCTGGCCTTCGTCACAGCCTACA
ACTTCGCCAAGCATCTCAAGTCGTTGCGCTGGAAGACCCCGTTCCAGAGCATCTGTCATGCCTGGACCAAAGACCCAGACCGCTTCAAAATCGACCCGCA
CCACCTCATACCGGGACCATACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
966 bp | 321 aa | 63 | 1028 | + | No |
Chemistry : DDE
ORF sequence :
MAGVLHGSARTTPRVRAELQASKESSRALAAQYGLNPKTVAKWRRRAVTTDAPMGPKKPRSTVMTPAEEAIVVEFRRRTLLPLDDVLGCLRETIPSLSRS
ALHRCLQRHGISRLPAAETALTRKRFKTYDIGYVHIDSCELRHADGKLIMFLAIDRVSKFTYVEFHDSAGKMEGSAFLRKAVAVFPYKIHTVLTDNGMAF
ADLPKNRTGPSRRFLGPHIFDRVCLEHGIEHRLTKPYHPWTNGQAERMNRTIKDATVRVFHYEDLESLKAHVLAFVTAYNFAKHLKSLRWKTPFQSICHA
WTKDPDRFKIDPHHLIPGPYT
ALHRCLQRHGISRLPAAETALTRKRFKTYDIGYVHIDSCELRHADGKLIMFLAIDRVSKFTYVEFHDSAGKMEGSAFLRKAVAVFPYKIHTVLTDNGMAF
ADLPKNRTGPSRRFLGPHIFDRVCLEHGIEHRLTKPYHPWTNGQAERMNRTIKDATVRVFHYEDLESLKAHVLAFVTAYNFAKHLKSLRWKTPFQSICHA
WTKDPDRFKIDPHHLIPGPYT
Blast result :
Comments
There are no STOP codon, the transposase use the first Stop codon after the end of the IRR. The last amino acid and the codon stop were in the insertion site.
ISMtsp16 is 72% aa similar to ISMdi8.
ISMtsp16 is 72% aa similar to ISMdi8.
References
1] Ming-Chun Lee and David Robinson (2009) Direct submission.
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E.,Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T.,Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M.,Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2008) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E.,Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T.,Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M.,Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2008) Direct submission GenBank.