ISMtsp13
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010511 | ND | Methylobacterium sp. | Methylobacterium sp. 4-46 Methylobacterium sp. 4-46 plasmid pM44601 |
DNA section
IS Length : 1428 bp
Ends
IR Length : 23/27
IRL : GGTCGTGTCCCTGGTGGTGGTGTAGCTCGACGGGAGCGAGAGAGCCCGCC
IRR : GGTCGTGTCCCCAGGCGTGGTGTAGCTGCGGCGTGGCCACCACAGTCACC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGGCGGCAGA | CCTGCGGG | CGCCCTGGTT | 8 |
ATCGTCCATC | GAGGCCCG | GGCGCGCGTC | 8 |
CGCGAGCTCG | GACATCCGAC | 0 |
DNA sequence
GGTCGTGTCCCTGGTGGTGGTGTAGCTCGACGGGAGCGAGAGAGCCCGCCTGCGCGCCCTCCACAGCGCCGAAGCAGGCGGGATCTCTCGCGGGGTGGTC
ATCGGCGGTTGCCGGGTAGGGTCGGGGTGCGAGCACCAACCTCGAACCCGAGAGACCTCCGATGACCGACGAGATGATGAGCCTGCGCGGGCTGCTGGAG
AAGAGCGCCGACGCCGACCTGCTGCGCGAGATGATCGGCTTTGCGGCCGAGCGGCTGATGGAACTGGAGGTGGGCGGCCTGACCGGGGCGGCCCACGGCG
AGAAGAGCGCCGAGCGGCTGGTCCAGCGCAACGGCTATCGTGACCGGGATTGGCAGACGCGGGCCGGCACGGTCGAGCTGCGCATCCCCAAGCTGCGCAA
GGGCTCGTACTTCCCGGCTTTCCTGGAGCCGCGCCGGATGGCCGAGAAGGCACTCACGGCGGTGATCCAGGAGGCCTACATCCAGGGCATCTCGACCCGC
TCGGTGGATGACCTCGTCCAAGCCATGGGCGGCACGGGCGTGTCCAAGAGCCAGGTCAGCCGGCTCTGCCAGGAGATCGACGAGCGCGTGGGCGCGTTCC
TCGACCGGCCGCTCGAGGGCGAGTGGTCCTATCTCTGGATCGATGCGACCTCCGTGAAGGTGCGCCAAGCCGGGCGCATCGTCTCCGTCGCCGTGATCGT
GGCGGTCGGTGTGAACAGCGACGGCCGCAGGGAAGCGCTCGGCATGGACATTGGCCCCTCCGAGGCTGAGACGTTCTGGACCGGGTTCCTGCGCAAGCTG
GCGCGCCGCGGCCTGCGCGGTGTGAAGCTGGTGATTTCGGACGCCCACACGGGCCTCAAGGCGTCGGTCGCCAAGGTGATGAACGCGACTTGGCAGCGGT
GCCGCGTCCACTTCATGAGGACCGTGCTCGCCCACGCTGGCCGCAGCGGGCGGCGCGTCGTGTCCGCCTTCATCGCCACCGCCTTCGCCCAGGACGACGC
GGAGGCCGCCCGTCAGCAATGGCGACGCGTGGCCGACCAACTCCGACCCAAGGTGCCCAAGCTCGCAGCCCTGATGCATGAGGCGGAACCCGACGTGCTG
GCCTACATGGGCTTCCCGGCCGCCCACCGGGTCAAGCTTCACAGCACGAACCCGCTGGAGCGCCTCAACGGCGAGATCAAGCGGCGCACCGAGGTGGTCG
GCATCTTCCCCAATGAGGCGGCCATCACCCGCTTGGTCGGCGCGCTCCTGCTCGAACAGAACGACGAGTGGGCCGTCCAGCGCGCCCGCTACCTGACCCT
GGAAAGCATCGCCCCGATCAGCGATGATCCTCTTGTCAGCCTGCCCACCCTGGCAGCCTGATCGTCCCGGCCCCGCCCGGTGACTGTGGTGGCCACGCCG
CAGCTACACCACGCCTGGGGACACGACC
ATCGGCGGTTGCCGGGTAGGGTCGGGGTGCGAGCACCAACCTCGAACCCGAGAGACCTCCGATGACCGACGAGATGATGAGCCTGCGCGGGCTGCTGGAG
AAGAGCGCCGACGCCGACCTGCTGCGCGAGATGATCGGCTTTGCGGCCGAGCGGCTGATGGAACTGGAGGTGGGCGGCCTGACCGGGGCGGCCCACGGCG
AGAAGAGCGCCGAGCGGCTGGTCCAGCGCAACGGCTATCGTGACCGGGATTGGCAGACGCGGGCCGGCACGGTCGAGCTGCGCATCCCCAAGCTGCGCAA
GGGCTCGTACTTCCCGGCTTTCCTGGAGCCGCGCCGGATGGCCGAGAAGGCACTCACGGCGGTGATCCAGGAGGCCTACATCCAGGGCATCTCGACCCGC
TCGGTGGATGACCTCGTCCAAGCCATGGGCGGCACGGGCGTGTCCAAGAGCCAGGTCAGCCGGCTCTGCCAGGAGATCGACGAGCGCGTGGGCGCGTTCC
TCGACCGGCCGCTCGAGGGCGAGTGGTCCTATCTCTGGATCGATGCGACCTCCGTGAAGGTGCGCCAAGCCGGGCGCATCGTCTCCGTCGCCGTGATCGT
GGCGGTCGGTGTGAACAGCGACGGCCGCAGGGAAGCGCTCGGCATGGACATTGGCCCCTCCGAGGCTGAGACGTTCTGGACCGGGTTCCTGCGCAAGCTG
GCGCGCCGCGGCCTGCGCGGTGTGAAGCTGGTGATTTCGGACGCCCACACGGGCCTCAAGGCGTCGGTCGCCAAGGTGATGAACGCGACTTGGCAGCGGT
GCCGCGTCCACTTCATGAGGACCGTGCTCGCCCACGCTGGCCGCAGCGGGCGGCGCGTCGTGTCCGCCTTCATCGCCACCGCCTTCGCCCAGGACGACGC
GGAGGCCGCCCGTCAGCAATGGCGACGCGTGGCCGACCAACTCCGACCCAAGGTGCCCAAGCTCGCAGCCCTGATGCATGAGGCGGAACCCGACGTGCTG
GCCTACATGGGCTTCCCGGCCGCCCACCGGGTCAAGCTTCACAGCACGAACCCGCTGGAGCGCCTCAACGGCGAGATCAAGCGGCGCACCGAGGTGGTCG
GCATCTTCCCCAATGAGGCGGCCATCACCCGCTTGGTCGGCGCGCTCCTGCTCGAACAGAACGACGAGTGGGCCGTCCAGCGCGCCCGCTACCTGACCCT
GGAAAGCATCGCCCCGATCAGCGATGATCCTCTTGTCAGCCTGCCCACCCTGGCAGCCTGATCGTCCCGGCCCCGCCCGGTGACTGTGGTGGCCACGCCG
CAGCTACACCACGCCTGGGGACACGACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1200 bp | 399 aa | 162 | 1361 | + | No |
Chemistry : DDE
ORF sequence :
MTDEMMSLRGLLEKSADADLLREMIGFAAERLMELEVGGLTGAAHGEKSAERLVQRNGYRDRDWQTRAGTVELRIPKLRKGSYFPAFLEPRRMAEKALTA
VIQEAYIQGISTRSVDDLVQAMGGTGVSKSQVSRLCQEIDERVGAFLDRPLEGEWSYLWIDATSVKVRQAGRIVSVAVIVAVGVNSDGRREALGMDIGPS
EAETFWTGFLRKLARRGLRGVKLVISDAHTGLKASVAKVMNATWQRCRVHFMRTVLAHAGRSGRRVVSAFIATAFAQDDAEAARQQWRRVADQLRPKVPK
LAALMHEAEPDVLAYMGFPAAHRVKLHSTNPLERLNGEIKRRTEVVGIFPNEAAITRLVGALLLEQNDEWAVQRARYLTLESIAPISDDPLVSLPTLAA
VIQEAYIQGISTRSVDDLVQAMGGTGVSKSQVSRLCQEIDERVGAFLDRPLEGEWSYLWIDATSVKVRQAGRIVSVAVIVAVGVNSDGRREALGMDIGPS
EAETFWTGFLRKLARRGLRGVKLVISDAHTGLKASVAKVMNATWQRCRVHFMRTVLAHAGRSGRRVVSAFIATAFAQDDAEAARQQWRRVADQLRPKVPK
LAALMHEAEPDVLAYMGFPAAHRVKLHSTNPLERLNGEIKRRTEVVGIFPNEAAITRLVGALLLEQNDEWAVQRARYLTLESIAPISDDPLVSLPTLAA
Blast result :
Comments
ISMtsp13 is 89% aa similar to ISAli6.
References
1] Ming-Chun Lee and David Robinson (2009) Direct submission.
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E.,Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T.,Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M.,Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2008) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E.,Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T.,Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M.,Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2008) Direct submission GenBank.