ISMtsp7
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010511 | ND | Methylobacterium sp. | Methylobacterium sp. 4-46 |
DNA section
IS Length : 1316 bp
Ends
IR Length : 15
IRL : gcgttatgggATGGACGCCTCCCGCTCCGCGCCCAGGTTGGGCGAGACCG
IRR : -------tctATGGACGCCTCCCGCGGCAAGGTATTCCTCAGCGACGACC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTCGGCCATG | TTGTCGTGAG | 0 | |
CTCGCACAGT | TTGTCGTAAG | 0 | |
CTCGGCCATG | TTGTCGTAAG | 0 | |
CTCCATCGGC | TGTCGTAACA | 0 |
DNA sequence
GCGTTATGGGATGGACGCCTCCCGCTCCGCGCCCAGGTTGGGCGAGACCGAGAGGGAGAAGAGCCATGCAGATGCTCGCGATCGATCTGGCCAAGCAGTC
GTTTCACGTTCACGGCGTCGATGCCGATGGTCAGGTGATCTCCCGGCGCGTCGGGCGCACCAAACTTCCGGCGCTGGTGGCCAGCCTCGCCCCGAAGGTG
ATCGCCATGGAGGCTTGCGCCACGGCCCATCATTGGGCGCGAGCTTTCCTCGCGGCCGGGCATGAGGTTCGGCTGATCAACCCGCGCTTCGTCAAGCCGT
TCGTGCGCGGCTCGAAGAACGATGCCGTCGACGCCGAGGCGATCTTCGACGCCGCCTCACGTCCCACGATGCGGTTTGTGCCTGTGAAGTCGACCGAGCA
GCAAGACCTGCAGTCGCTTCATCGCGTCCGCGATCGGCTGGTCTCGCAACGCACGAACCTGATCAATCATACCCGTGGGCTCCTGGCTGAGTACGGCCTC
ATCTACCCGAAGGGTGCGGCCCGCTTTCCAGCGCGTGTGCGGGCGGAACTTTCCGAGGCGGGACTGTCGCCGATGGCGCGAGCCACCTTCGCGGCCCTGC
TCGACGAGTTGGAGACCCTGGAGACGCGGCTTGAGCGGCTCGACGATCAACTTCGGGCGATCTGCCGCGAAGACGTCGTCTGCCGCCGCCTGATGACGTT
GCCTGGCGTGGGCCCGGTCGTCGCCACCGCCCTCAAGGCCAGCGTCGGCGATGCCCGCCAGTTCCGCTCAGGGCGCGAACTCGCGGCCTGGATCGGCTTG
GTGCCGCGACAGTACTCCACCGGCGGCAAGCCGCACCTCGGGGGCGTCGGACGCCGGGCCAACCACTATCTGCGGCGCCAACTCGTGCACGGCGCCCGCG
CGGTCGCCTTGCGCCTGGCCACGAAGACCGATCCGCGCTCACGCTGGTTCCAGGCGGTGATCGACCGGCGCGGGTTCAACAAGGGGATCGTGGCGATGGC
CAACAAGACCGCGCGGATAGCCTGGGCGATGCTGAGGCGCGAGGAGGATTACGCCCGCGCCTGACGCGGGCGACCGAGATCGTCGCGCGAGCGGCGATGC
GTGCGAGGTGACCGACGATGGCGACACGGCGTGGGCCGCCGCTTCCGATCCTGACCTACGACACGGCCTTCGAGGCCGCTAGCGTTATGAGGACGGAAGA
AGCGGACCCCATCGAGGCCAGGGGCGTGATCGCTCCACCGACAGGCCGGATAGATTCACGCACCCAAGGTCGTGGTCGTCGCTGAGGAATACCTTGCCGC
GGGAGGCGTCCATAGA
GTTTCACGTTCACGGCGTCGATGCCGATGGTCAGGTGATCTCCCGGCGCGTCGGGCGCACCAAACTTCCGGCGCTGGTGGCCAGCCTCGCCCCGAAGGTG
ATCGCCATGGAGGCTTGCGCCACGGCCCATCATTGGGCGCGAGCTTTCCTCGCGGCCGGGCATGAGGTTCGGCTGATCAACCCGCGCTTCGTCAAGCCGT
TCGTGCGCGGCTCGAAGAACGATGCCGTCGACGCCGAGGCGATCTTCGACGCCGCCTCACGTCCCACGATGCGGTTTGTGCCTGTGAAGTCGACCGAGCA
GCAAGACCTGCAGTCGCTTCATCGCGTCCGCGATCGGCTGGTCTCGCAACGCACGAACCTGATCAATCATACCCGTGGGCTCCTGGCTGAGTACGGCCTC
ATCTACCCGAAGGGTGCGGCCCGCTTTCCAGCGCGTGTGCGGGCGGAACTTTCCGAGGCGGGACTGTCGCCGATGGCGCGAGCCACCTTCGCGGCCCTGC
TCGACGAGTTGGAGACCCTGGAGACGCGGCTTGAGCGGCTCGACGATCAACTTCGGGCGATCTGCCGCGAAGACGTCGTCTGCCGCCGCCTGATGACGTT
GCCTGGCGTGGGCCCGGTCGTCGCCACCGCCCTCAAGGCCAGCGTCGGCGATGCCCGCCAGTTCCGCTCAGGGCGCGAACTCGCGGCCTGGATCGGCTTG
GTGCCGCGACAGTACTCCACCGGCGGCAAGCCGCACCTCGGGGGCGTCGGACGCCGGGCCAACCACTATCTGCGGCGCCAACTCGTGCACGGCGCCCGCG
CGGTCGCCTTGCGCCTGGCCACGAAGACCGATCCGCGCTCACGCTGGTTCCAGGCGGTGATCGACCGGCGCGGGTTCAACAAGGGGATCGTGGCGATGGC
CAACAAGACCGCGCGGATAGCCTGGGCGATGCTGAGGCGCGAGGAGGATTACGCCCGCGCCTGACGCGGGCGACCGAGATCGTCGCGCGAGCGGCGATGC
GTGCGAGGTGACCGACGATGGCGACACGGCGTGGGCCGCCGCTTCCGATCCTGACCTACGACACGGCCTTCGAGGCCGCTAGCGTTATGAGGACGGAAGA
AGCGGACCCCATCGAGGCCAGGGGCGTGATCGCTCCACCGACAGGCCGGATAGATTCACGCACCCAAGGTCGTGGTCGTCGCTGAGGAATACCTTGCCGC
GGGAGGCGTCCATAGA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
999 bp | 332 aa | 66 | 1064 | + | No |
Chemistry : DEDD
ORF sequence :
MQMLAIDLAKQSFHVHGVDADGQVISRRVGRTKLPALVASLAPKVIAMEACATAHHWARAFLAAGHEVRLINPRFVKPFVRGSKNDAVDAEAIFDAASRP
TMRFVPVKSTEQQDLQSLHRVRDRLVSQRTNLINHTRGLLAEYGLIYPKGAARFPARVRAELSEAGLSPMARATFAALLDELETLETRLERLDDQLRAIC
REDVVCRRLMTLPGVGPVVATALKASVGDARQFRSGRELAAWIGLVPRQYSTGGKPHLGGVGRRANHYLRRQLVHGARAVALRLATKTDPRSRWFQAVID
RRGFNKGIVAMANKTARIAWAMLRREEDYARA
TMRFVPVKSTEQQDLQSLHRVRDRLVSQRTNLINHTRGLLAEYGLIYPKGAARFPARVRAELSEAGLSPMARATFAALLDELETLETRLERLDDQLRAIC
REDVVCRRLMTLPGVGPVVATALKASVGDARQFRSGRELAAWIGLVPRQYSTGGKPHLGGVGRRANHYLRRQLVHGARAVALRLATKTDPRSRWFQAVID
RRGFNKGIVAMANKTARIAWAMLRREEDYARA
Blast result :
Comments
ISMtsp7 is 66% aa similar to ISPa11.
References
1] Ming-Chun Lee and David Robinson (2009) Direct submission.
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E.,Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T.,Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M.,Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2008) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E.,Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T.,Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M.,Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2008) Direct submission GenBank.