ISMtsp7

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010511 ND Methylobacterium sp.
Methylobacterium sp. 4-46
DNA section
IS Length : 1316 bp

Ends


IR Length : 15

IRL : gcgttatgggATGGACGCCTCCCGCTCCGCGCCCAGGTTGGGCGAGACCG
IRR : -------tctATGGACGCCTCCCGCGGCAAGGTATTCCTCAGCGACGACC

Insertion site


Left flankDirect repeatRight flankDR Length
TTCGGCCATGTTGTCGTGAG0
CTCGCACAGTTTGTCGTAAG0
CTCGGCCATGTTGTCGTAAG0
CTCCATCGGCTGTCGTAACA0

DNA sequence

GCGTTATGGGATGGACGCCTCCCGCTCCGCGCCCAGGTTGGGCGAGACCGAGAGGGAGAAGAGCCATGCAGATGCTCGCGATCGATCTGGCCAAGCAGTC
GTTTCACGTTCACGGCGTCGATGCCGATGGTCAGGTGATCTCCCGGCGCGTCGGGCGCACCAAACTTCCGGCGCTGGTGGCCAGCCTCGCCCCGAAGGTG
ATCGCCATGGAGGCTTGCGCCACGGCCCATCATTGGGCGCGAGCTTTCCTCGCGGCCGGGCATGAGGTTCGGCTGATCAACCCGCGCTTCGTCAAGCCGT
TCGTGCGCGGCTCGAAGAACGATGCCGTCGACGCCGAGGCGATCTTCGACGCCGCCTCACGTCCCACGATGCGGTTTGTGCCTGTGAAGTCGACCGAGCA
GCAAGACCTGCAGTCGCTTCATCGCGTCCGCGATCGGCTGGTCTCGCAACGCACGAACCTGATCAATCATACCCGTGGGCTCCTGGCTGAGTACGGCCTC
ATCTACCCGAAGGGTGCGGCCCGCTTTCCAGCGCGTGTGCGGGCGGAACTTTCCGAGGCGGGACTGTCGCCGATGGCGCGAGCCACCTTCGCGGCCCTGC
TCGACGAGTTGGAGACCCTGGAGACGCGGCTTGAGCGGCTCGACGATCAACTTCGGGCGATCTGCCGCGAAGACGTCGTCTGCCGCCGCCTGATGACGTT
GCCTGGCGTGGGCCCGGTCGTCGCCACCGCCCTCAAGGCCAGCGTCGGCGATGCCCGCCAGTTCCGCTCAGGGCGCGAACTCGCGGCCTGGATCGGCTTG
GTGCCGCGACAGTACTCCACCGGCGGCAAGCCGCACCTCGGGGGCGTCGGACGCCGGGCCAACCACTATCTGCGGCGCCAACTCGTGCACGGCGCCCGCG
CGGTCGCCTTGCGCCTGGCCACGAAGACCGATCCGCGCTCACGCTGGTTCCAGGCGGTGATCGACCGGCGCGGGTTCAACAAGGGGATCGTGGCGATGGC
CAACAAGACCGCGCGGATAGCCTGGGCGATGCTGAGGCGCGAGGAGGATTACGCCCGCGCCTGACGCGGGCGACCGAGATCGTCGCGCGAGCGGCGATGC
GTGCGAGGTGACCGACGATGGCGACACGGCGTGGGCCGCCGCTTCCGATCCTGACCTACGACACGGCCTTCGAGGCCGCTAGCGTTATGAGGACGGAAGA
AGCGGACCCCATCGAGGCCAGGGGCGTGATCGCTCCACCGACAGGCCGGATAGATTCACGCACCCAAGGTCGTGGTCGTCGCTGAGGAATACCTTGCCGC
GGGAGGCGTCCATAGA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
999 bp332 aa661064+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MQMLAIDLAKQSFHVHGVDADGQVISRRVGRTKLPALVASLAPKVIAMEACATAHHWARAFLAAGHEVRLINPRFVKPFVRGSKNDAVDAEAIFDAASRP
TMRFVPVKSTEQQDLQSLHRVRDRLVSQRTNLINHTRGLLAEYGLIYPKGAARFPARVRAELSEAGLSPMARATFAALLDELETLETRLERLDDQLRAIC
REDVVCRRLMTLPGVGPVVATALKASVGDARQFRSGRELAAWIGLVPRQYSTGGKPHLGGVGRRANHYLRRQLVHGARAVALRLATKTDPRSRWFQAVID
RRGFNKGIVAMANKTARIAWAMLRREEDYARA

 

Blast result :
Comments
ISMtsp7 is 66% aa similar to ISPa11.
References
1] Ming-Chun Lee and David Robinson (2009) Direct submission.

2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E.,Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T.,Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M.,Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2008) Direct submission GenBank.