ISMno30
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_011894 | ND | Methylobacterium nodulans | Methylobacterium nodulans ORS 2060 |
DNA section
IS Length : 1773 bp
Ends
IR Length : 25
IRL : GGCTCTTCGTCATTTCGTGTGGATCCGCACGCGTTCTCCTCTCGTGCCAG
IRR : GGCTCTTCGTCATTTCGTGTGGATCATGGGGGCAGGAGCATCCGCCGGCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCTGGACTTGCTTCGAATTA | ACTTTTCCGGGCTAAGTCCA | 0 |
DNA sequence
GGCTCTTCGTCATTTCGTGTGGATCCGCACGCGTTCTCCTCTCGTGCCAGCATGACGGGGCATGGTGATGACGCGGCTGTACGAGATCCCCGGCTGTGAC
CTGATCGCGATCCACACCGATCGCGCTGCAAACATCGTGATGCAGGTTCATGGCCGCCGACGCGAGGGACGATGCCCCGCTTGCGGGACCCCGAGTGCTG
CTGGGCACGGGTGCTACCGGCGCCGCCCCGCCGACCTGCCCTCCCTCGGACGGGCGGTGCGGCTCGATCTGGCCGTCCGGCGGTTGCGCTGCCTCAATCC
ATCCTGCACACGGCGCACCTTCTGCCTCCCGGTTCCCACGCTCCTGGCGCCGCGCGTGCGACGCACGCGACGTCTCGCCAAGGCGCAGCAGCGCGTCGGC
CTCGCCACCAGCGCTCGCGCCGGTGCGCGCCTGCTCGCGTCCCTGGCCATGCCGACGAGCGGATCGACGCTGCTGCGCCTGATGCACGCTGCCCCGCTGC
CCCGGGCCGGACGAGTGCGGGCGATCGGGGTCGACGACTGGGCGTGGCGCCGCGGTCGCGCCTGGGGCACCCTCCTCGTCGACCTCGACCGTCATCGCAC
CATCGATCTCCTGCCTGACCGCACCTCCACGACCTTCGAGGCTTGGCTGCGGTCGCGCCCCGGCCTGGAGATCGTCGCGCGGGATCGCTCGACCGGGTCC
GCCCGTGCGGCCCAGGCCGTCGTGCCAGGTGCCCAGCAGGTCGCGGATCGATGGCATCTCCTGCTGAACGCGCGGCAGATGCTGGAACGCTGGCTGGTCG
GCGCCCATGCCCGCCTGGACGCTTGGCCCGTCCCCTCAGGCTCTTCGCGGCCGACCCGCGATCACGCTTTTCCGCGAAGCCGCACGGACCAAGCCGCCGC
GCGCGAGGCGCAACGTCGCCGCGTCGCACGTCACGCGGAGGTGCAGCGTCGGCGCGCGGCAGGCGAGTCGATCATGGCGATCGCCCGCGCGATCCCACTG
GCCCCGGGCACGGTGCGCCGCTATGCCTCCACGGATCATGCTCCGGAGCGCGGCGAGCGCCGGATCGGACCGAGCCTGCTTGATCCCTTCCTCGCCCATC
TCGAGGAACGCCTCGCCGAGGGTTGCGAGAATGGGCTGCATCTCGTGCGGGAGTTGCGCAATCTGGGCTACGCGGGCGGCTCGCGGCAAGGTCACAAATG
GCTGCAGAGCCGGCGAACGAGGCGCGCGCGTAACACGGCGCGACGCTGGCGCGGCACTCTTCCCGAGGGGGCCGCCCTCGACCCGGCTGCTCCGCCGGTA
CGGCCGGTCGCCGTGCGGCTGCCGGGGCCGAAGGCGCTCGCCTGGATCATGATGGCGGCGCCGGCGCGACTAAGCCCGCCCGAGGGCGCTCTCCTCGCGC
GAGTCATGCAGGATCCGGAGGCGGCCACGATGCACGGGTTGGTCCAGCAATTCGCCGCGCTCGTGCGAGCAGCCGGTGTGGGAGGGAACGGCGTGTCCGC
TCGCGGCATCCGGCGCCTAGCAGCGTTGGAGGCGTGGCTCGCCGAGGCGCGAGCCAGCAGCATCCGGGCCTTGCAGACCTTCGCAAGCGGCCTCGTCATG
GACGGAGCCGCGGTGCGGGCCGCGCTGACCACGCCGTGGAGTAACGCTCAGGCGGAGGGCCAGATCACGAAGCTGAAGTTGATCAAGCGGCTGATGTACG
GCCGAGCCGGGTTCGATCTACTGCGCCGGCGGATGCTCCTGCCCCCATGATCCACACGAAATGACGAAGAGCC
CTGATCGCGATCCACACCGATCGCGCTGCAAACATCGTGATGCAGGTTCATGGCCGCCGACGCGAGGGACGATGCCCCGCTTGCGGGACCCCGAGTGCTG
CTGGGCACGGGTGCTACCGGCGCCGCCCCGCCGACCTGCCCTCCCTCGGACGGGCGGTGCGGCTCGATCTGGCCGTCCGGCGGTTGCGCTGCCTCAATCC
ATCCTGCACACGGCGCACCTTCTGCCTCCCGGTTCCCACGCTCCTGGCGCCGCGCGTGCGACGCACGCGACGTCTCGCCAAGGCGCAGCAGCGCGTCGGC
CTCGCCACCAGCGCTCGCGCCGGTGCGCGCCTGCTCGCGTCCCTGGCCATGCCGACGAGCGGATCGACGCTGCTGCGCCTGATGCACGCTGCCCCGCTGC
CCCGGGCCGGACGAGTGCGGGCGATCGGGGTCGACGACTGGGCGTGGCGCCGCGGTCGCGCCTGGGGCACCCTCCTCGTCGACCTCGACCGTCATCGCAC
CATCGATCTCCTGCCTGACCGCACCTCCACGACCTTCGAGGCTTGGCTGCGGTCGCGCCCCGGCCTGGAGATCGTCGCGCGGGATCGCTCGACCGGGTCC
GCCCGTGCGGCCCAGGCCGTCGTGCCAGGTGCCCAGCAGGTCGCGGATCGATGGCATCTCCTGCTGAACGCGCGGCAGATGCTGGAACGCTGGCTGGTCG
GCGCCCATGCCCGCCTGGACGCTTGGCCCGTCCCCTCAGGCTCTTCGCGGCCGACCCGCGATCACGCTTTTCCGCGAAGCCGCACGGACCAAGCCGCCGC
GCGCGAGGCGCAACGTCGCCGCGTCGCACGTCACGCGGAGGTGCAGCGTCGGCGCGCGGCAGGCGAGTCGATCATGGCGATCGCCCGCGCGATCCCACTG
GCCCCGGGCACGGTGCGCCGCTATGCCTCCACGGATCATGCTCCGGAGCGCGGCGAGCGCCGGATCGGACCGAGCCTGCTTGATCCCTTCCTCGCCCATC
TCGAGGAACGCCTCGCCGAGGGTTGCGAGAATGGGCTGCATCTCGTGCGGGAGTTGCGCAATCTGGGCTACGCGGGCGGCTCGCGGCAAGGTCACAAATG
GCTGCAGAGCCGGCGAACGAGGCGCGCGCGTAACACGGCGCGACGCTGGCGCGGCACTCTTCCCGAGGGGGCCGCCCTCGACCCGGCTGCTCCGCCGGTA
CGGCCGGTCGCCGTGCGGCTGCCGGGGCCGAAGGCGCTCGCCTGGATCATGATGGCGGCGCCGGCGCGACTAAGCCCGCCCGAGGGCGCTCTCCTCGCGC
GAGTCATGCAGGATCCGGAGGCGGCCACGATGCACGGGTTGGTCCAGCAATTCGCCGCGCTCGTGCGAGCAGCCGGTGTGGGAGGGAACGGCGTGTCCGC
TCGCGGCATCCGGCGCCTAGCAGCGTTGGAGGCGTGGCTCGCCGAGGCGCGAGCCAGCAGCATCCGGGCCTTGCAGACCTTCGCAAGCGGCCTCGTCATG
GACGGAGCCGCGGTGCGGGCCGCGCTGACCACGCCGTGGAGTAACGCTCAGGCGGAGGGCCAGATCACGAAGCTGAAGTTGATCAAGCGGCTGATGTACG
GCCGAGCCGGGTTCGATCTACTGCGCCGGCGGATGCTCCTGCCCCCATGATCCACACGAAATGACGAAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1689 bp | 562 aa | 62 | 1750 | + | No |
Chemistry : Unknow
ORF sequence :
MVMTRLYEIPGCDLIAIHTDRAANIVMQVHGRRREGRCPACGTPSAAGHGCYRRRPADLPSLGRAVRLDLAVRRLRCLNPSCTRRTFCLPVPTLLAPRVR
RTRRLAKAQQRVGLATSARAGARLLASLAMPTSGSTLLRLMHAAPLPRAGRVRAIGVDDWAWRRGRAWGTLLVDLDRHRTIDLLPDRTSTTFEAWLRSRP
GLEIVARDRSTGSARAAQAVVPGAQQVADRWHLLLNARQMLERWLVGAHARLDAWPVPSGSSRPTRDHAFPRSRTDQAAAREAQRRRVARHAEVQRRRAA
GESIMAIARAIPLAPGTVRRYASTDHAPERGERRIGPSLLDPFLAHLEERLAEGCENGLHLVRELRNLGYAGGSRQGHKWLQSRRTRRARNTARRWRGTL
PEGAALDPAAPPVRPVAVRLPGPKALAWIMMAAPARLSPPEGALLARVMQDPEAATMHGLVQQFAALVRAAGVGGNGVSARGIRRLAALEAWLAEARASS
IRALQTFASGLVMDGAAVRAALTTPWSNAQAEGQITKLKLIKRLMYGRAGFDLLRRRMLLPP
RTRRLAKAQQRVGLATSARAGARLLASLAMPTSGSTLLRLMHAAPLPRAGRVRAIGVDDWAWRRGRAWGTLLVDLDRHRTIDLLPDRTSTTFEAWLRSRP
GLEIVARDRSTGSARAAQAVVPGAQQVADRWHLLLNARQMLERWLVGAHARLDAWPVPSGSSRPTRDHAFPRSRTDQAAAREAQRRRVARHAEVQRRRAA
GESIMAIARAIPLAPGTVRRYASTDHAPERGERRIGPSLLDPFLAHLEERLAEGCENGLHLVRELRNLGYAGGSRQGHKWLQSRRTRRARNTARRWRGTL
PEGAALDPAAPPVRPVAVRLPGPKALAWIMMAAPARLSPPEGALLARVMQDPEAATMHGLVQQFAALVRAAGVGGNGVSARGIRRLAALEAWLAEARASS
IRALQTFASGLVMDGAAVRAALTTPWSNAQAEGQITKLKLIKRLMYGRAGFDLLRRRMLLPP
Blast result :
Comments
ISMno30 is 66% aa similar to ISMno5.
References
1] Ming-Chun Lee and David Robinson, direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission.