ISMtsp4

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010511 ND Methylobacterium sp.
Methylobacterium sp. 4-46
DNA section
IS Length : 1455 bp

Ends


IR Length : 21/23

IRL : GGTGGATTCAAGTGGTCGTCGCAACGGCTTGGCGGAGGGCGGTTGTGATG
IRR : CTTGGGTTCAAGCGGTCGTCGCAACACCATCTTGCACGGCAGCCAGCACA

Insertion site


Left flankDirect repeatRight flankDR Length
TCGGTGCGGATTGGTTCTGGCAG3
GAGCGAGGTATTGCGACCCGCGA3
CCTGACGACAGGCTCGTCCAGCC3
ACGAGGCGCAGACTCTGCCGACG3
TCCCGGCGCCGGCCGCGCCGACC3
GTGGGGTATACCTCACCGGACAA3
GGTCAGCAAGGCTCAGAGCCTCG3
GCGAAGTCTAGTGCGAGCCCTGA3
TAATACCACATAGAATGCCATCG3
CGCTTGACGCTAGAGACCCGCGA3
GCGCGGCACAATGTCTCCGGCGT3
CTGCGGGACTCATTGTCGCCGGG3
TCCGCACCACCAATACCTTG0
CCGCGTAGTGCTGGCTGCCG0
CCGCGTAGTGCTGGCTGCCG0

DNA sequence

GGTGGATTCAAGTGGTCGTCGCAACGGCTTGGCGGAGGGCGGTTGTGATGGCAGGTCGGCGGCGTTCGGATCGGGCACTTCGCGAGAAGCTGCGGTCACC
GGGTCGTCCCGGGGTCGGTCTGCGCGAGACGCGGCGGGGGTTCTGGGCGTTCCTCGCGCAGGGTCTCTCCAGCGAGGTCGCAGCGATGAAGCTCGGGATC
TCGCCACCGGTCGGCTCGCGGTGGTTCCGGACAGCAGGCGGAATGGCACCTTCCCACCTGTCACCATCATCCAAGTCGCCTTCTGCGCGCTACCTGTCGT
TGGCTGAGCGGGAGGAGATCGCGATCCTACAAGCGCAAGGTCACGGGGTCCGGGACGTCGCTCGGCGTCTGGGACGGGCGGCGTCGACCATCTCGCGGGA
ATTGCGCCGCAATGCGGCGACCCGCAGTGGCGGCCTGGACTATCGCGCCACGACCGCGCAGTGGCACGCTGAACGCGCGGCACGCCGGCCCAAGCCAGCA
AAACTGGCGGGGAACGCAGCGCTGCGGACGTACGTGCAGGAGCGGCTCGCCGGAACTGTCGCGACACCGGGCGGGAGCGCTCTGCCTGGCCCTAGCGTTG
CCTGGAAGGGACGGCGGCACGGGCGACGCCAGAGCCGGCGATGGGGTCGATCCTGGAGTCCGCAGCAGATCGCCGAGCGCCTACGGCTCGACTTTCCGGG
CGATACGACGATGCGCATCAGTCACGAGGCGATCTATCAGGCGCTCTACATCCAGGGCCGGGGCGCGCTGAAGCGTGAGCTGACCGCGTGTCTTCGCACA
GGACGGGCTTTGCGTGTGCCGCGGGCCCGCAGCCTGGGCCGAGGCAGGTCGTTCGTCACCCCCGAGGTGCTCATCAGCGAGCGTCCGCCCGAGGTGGAGG
ACCGCGCGGTGCCGGGGCACTGGGAAGGAGATCTGATCCTGGGTCTGAAGAGTTCGGCGATCGGGACCCTGGTCGAGCGCACGACGCGCTTTACGATGCT
GCTGCATCTTCCGCCGATGGACGGCCATGGGGTGACACCGCGTGCGAAGAACGGCCCGGCGCTGGCGGGGCACGGGGCCCAGGCGGTGCGCGAGGCGATC
GCCGGCACGATCGCGCGCTTGCCCGAGCAGCTGCGGCGCTCGTTGACCTGGGACCAGGGTACCGAGATGGCCGAGCACGCGCGCTTGCGGATCGACGCGG
GTCTGCAGGTCTACTTCTGCGATCCACGCTCACCCTGGCAGCGGGGGACGAACGAGAATACGAACGGGTTACTGCGACAGTACTTCCCGAAAGGAACGGA
TCTGAGCGCCCACAGCGCGAACGATCTTGCTGCTGTGGCCGCAGCCCTCAACAGCAGACCGCGCAAGACGCTGAACTGGAAGACGCCGGCAGAGGCGCTC
GACGCTGTGCTGGCTGCCGTGCAAGATGGTGTTGCGACGACCGCTTGAACCCAAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1401 bp466 aa481448+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAGRRRSDRALREKLRSPGRPGVGLRETRRGFWAFLAQGLSSEVAAMKLGISPPVGSRWFRTAGGMAPSHLSPSSKSPSARYLSLAEREEIAILQAQGHG
VRDVARRLGRAASTISRELRRNAATRSGGLDYRATTAQWHAERAARRPKPAKLAGNAALRTYVQERLAGTVATPGGSALPGPSVAWKGRRHGRRQSRRWG
RSWSPQQIAERLRLDFPGDTTMRISHEAIYQALYIQGRGALKRELTACLRTGRALRVPRARSLGRGRSFVTPEVLISERPPEVEDRAVPGHWEGDLILGL
KSSAIGTLVERTTRFTMLLHLPPMDGHGVTPRAKNGPALAGHGAQAVREAIAGTIARLPEQLRRSLTWDQGTEMAEHARLRIDAGLQVYFCDPRSPWQRG
TNENTNGLLRQYFPKGTDLSAHSANDLAAVAAALNSRPRKTLNWKTPAEALDAVLAAVQDGVATTA

 

Blast result :
Comments
ISMtsp4 is 90% aa similar to ISMdi25.
References
1] Ming-Chun Lee and David Robinson (2009) Direct submission.

2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E.,Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T.,Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M.,Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2008) Direct submission GenBank.