ISMtsp4
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010511 | ND | Methylobacterium sp. | Methylobacterium sp. 4-46 |
DNA section
IS Length : 1455 bp
Ends
IR Length : 21/23
IRL : GGTGGATTCAAGTGGTCGTCGCAACGGCTTGGCGGAGGGCGGTTGTGATG
IRR : CTTGGGTTCAAGCGGTCGTCGCAACACCATCTTGCACGGCAGCCAGCACA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCGGTGCGGA | TTG | GTTCTGGCAG | 3 |
GAGCGAGGTA | TTG | CGACCCGCGA | 3 |
CCTGACGACA | GGC | TCGTCCAGCC | 3 |
ACGAGGCGCA | GAC | TCTGCCGACG | 3 |
TCCCGGCGCC | GGC | CGCGCCGACC | 3 |
GTGGGGTATA | CCT | CACCGGACAA | 3 |
GGTCAGCAAG | GCT | CAGAGCCTCG | 3 |
GCGAAGTCTA | GTG | CGAGCCCTGA | 3 |
TAATACCACA | TAG | AATGCCATCG | 3 |
CGCTTGACGC | TAG | AGACCCGCGA | 3 |
GCGCGGCACA | ATG | TCTCCGGCGT | 3 |
CTGCGGGACT | CAT | TGTCGCCGGG | 3 |
TCCGCACCAC | CAATACCTTG | 0 | |
CCGCGTAGTG | CTGGCTGCCG | 0 | |
CCGCGTAGTG | CTGGCTGCCG | 0 |
DNA sequence
GGTGGATTCAAGTGGTCGTCGCAACGGCTTGGCGGAGGGCGGTTGTGATGGCAGGTCGGCGGCGTTCGGATCGGGCACTTCGCGAGAAGCTGCGGTCACC
GGGTCGTCCCGGGGTCGGTCTGCGCGAGACGCGGCGGGGGTTCTGGGCGTTCCTCGCGCAGGGTCTCTCCAGCGAGGTCGCAGCGATGAAGCTCGGGATC
TCGCCACCGGTCGGCTCGCGGTGGTTCCGGACAGCAGGCGGAATGGCACCTTCCCACCTGTCACCATCATCCAAGTCGCCTTCTGCGCGCTACCTGTCGT
TGGCTGAGCGGGAGGAGATCGCGATCCTACAAGCGCAAGGTCACGGGGTCCGGGACGTCGCTCGGCGTCTGGGACGGGCGGCGTCGACCATCTCGCGGGA
ATTGCGCCGCAATGCGGCGACCCGCAGTGGCGGCCTGGACTATCGCGCCACGACCGCGCAGTGGCACGCTGAACGCGCGGCACGCCGGCCCAAGCCAGCA
AAACTGGCGGGGAACGCAGCGCTGCGGACGTACGTGCAGGAGCGGCTCGCCGGAACTGTCGCGACACCGGGCGGGAGCGCTCTGCCTGGCCCTAGCGTTG
CCTGGAAGGGACGGCGGCACGGGCGACGCCAGAGCCGGCGATGGGGTCGATCCTGGAGTCCGCAGCAGATCGCCGAGCGCCTACGGCTCGACTTTCCGGG
CGATACGACGATGCGCATCAGTCACGAGGCGATCTATCAGGCGCTCTACATCCAGGGCCGGGGCGCGCTGAAGCGTGAGCTGACCGCGTGTCTTCGCACA
GGACGGGCTTTGCGTGTGCCGCGGGCCCGCAGCCTGGGCCGAGGCAGGTCGTTCGTCACCCCCGAGGTGCTCATCAGCGAGCGTCCGCCCGAGGTGGAGG
ACCGCGCGGTGCCGGGGCACTGGGAAGGAGATCTGATCCTGGGTCTGAAGAGTTCGGCGATCGGGACCCTGGTCGAGCGCACGACGCGCTTTACGATGCT
GCTGCATCTTCCGCCGATGGACGGCCATGGGGTGACACCGCGTGCGAAGAACGGCCCGGCGCTGGCGGGGCACGGGGCCCAGGCGGTGCGCGAGGCGATC
GCCGGCACGATCGCGCGCTTGCCCGAGCAGCTGCGGCGCTCGTTGACCTGGGACCAGGGTACCGAGATGGCCGAGCACGCGCGCTTGCGGATCGACGCGG
GTCTGCAGGTCTACTTCTGCGATCCACGCTCACCCTGGCAGCGGGGGACGAACGAGAATACGAACGGGTTACTGCGACAGTACTTCCCGAAAGGAACGGA
TCTGAGCGCCCACAGCGCGAACGATCTTGCTGCTGTGGCCGCAGCCCTCAACAGCAGACCGCGCAAGACGCTGAACTGGAAGACGCCGGCAGAGGCGCTC
GACGCTGTGCTGGCTGCCGTGCAAGATGGTGTTGCGACGACCGCTTGAACCCAAG
GGGTCGTCCCGGGGTCGGTCTGCGCGAGACGCGGCGGGGGTTCTGGGCGTTCCTCGCGCAGGGTCTCTCCAGCGAGGTCGCAGCGATGAAGCTCGGGATC
TCGCCACCGGTCGGCTCGCGGTGGTTCCGGACAGCAGGCGGAATGGCACCTTCCCACCTGTCACCATCATCCAAGTCGCCTTCTGCGCGCTACCTGTCGT
TGGCTGAGCGGGAGGAGATCGCGATCCTACAAGCGCAAGGTCACGGGGTCCGGGACGTCGCTCGGCGTCTGGGACGGGCGGCGTCGACCATCTCGCGGGA
ATTGCGCCGCAATGCGGCGACCCGCAGTGGCGGCCTGGACTATCGCGCCACGACCGCGCAGTGGCACGCTGAACGCGCGGCACGCCGGCCCAAGCCAGCA
AAACTGGCGGGGAACGCAGCGCTGCGGACGTACGTGCAGGAGCGGCTCGCCGGAACTGTCGCGACACCGGGCGGGAGCGCTCTGCCTGGCCCTAGCGTTG
CCTGGAAGGGACGGCGGCACGGGCGACGCCAGAGCCGGCGATGGGGTCGATCCTGGAGTCCGCAGCAGATCGCCGAGCGCCTACGGCTCGACTTTCCGGG
CGATACGACGATGCGCATCAGTCACGAGGCGATCTATCAGGCGCTCTACATCCAGGGCCGGGGCGCGCTGAAGCGTGAGCTGACCGCGTGTCTTCGCACA
GGACGGGCTTTGCGTGTGCCGCGGGCCCGCAGCCTGGGCCGAGGCAGGTCGTTCGTCACCCCCGAGGTGCTCATCAGCGAGCGTCCGCCCGAGGTGGAGG
ACCGCGCGGTGCCGGGGCACTGGGAAGGAGATCTGATCCTGGGTCTGAAGAGTTCGGCGATCGGGACCCTGGTCGAGCGCACGACGCGCTTTACGATGCT
GCTGCATCTTCCGCCGATGGACGGCCATGGGGTGACACCGCGTGCGAAGAACGGCCCGGCGCTGGCGGGGCACGGGGCCCAGGCGGTGCGCGAGGCGATC
GCCGGCACGATCGCGCGCTTGCCCGAGCAGCTGCGGCGCTCGTTGACCTGGGACCAGGGTACCGAGATGGCCGAGCACGCGCGCTTGCGGATCGACGCGG
GTCTGCAGGTCTACTTCTGCGATCCACGCTCACCCTGGCAGCGGGGGACGAACGAGAATACGAACGGGTTACTGCGACAGTACTTCCCGAAAGGAACGGA
TCTGAGCGCCCACAGCGCGAACGATCTTGCTGCTGTGGCCGCAGCCCTCAACAGCAGACCGCGCAAGACGCTGAACTGGAAGACGCCGGCAGAGGCGCTC
GACGCTGTGCTGGCTGCCGTGCAAGATGGTGTTGCGACGACCGCTTGAACCCAAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1401 bp | 466 aa | 48 | 1448 | + | No |
Chemistry : DDE
ORF sequence :
MAGRRRSDRALREKLRSPGRPGVGLRETRRGFWAFLAQGLSSEVAAMKLGISPPVGSRWFRTAGGMAPSHLSPSSKSPSARYLSLAEREEIAILQAQGHG
VRDVARRLGRAASTISRELRRNAATRSGGLDYRATTAQWHAERAARRPKPAKLAGNAALRTYVQERLAGTVATPGGSALPGPSVAWKGRRHGRRQSRRWG
RSWSPQQIAERLRLDFPGDTTMRISHEAIYQALYIQGRGALKRELTACLRTGRALRVPRARSLGRGRSFVTPEVLISERPPEVEDRAVPGHWEGDLILGL
KSSAIGTLVERTTRFTMLLHLPPMDGHGVTPRAKNGPALAGHGAQAVREAIAGTIARLPEQLRRSLTWDQGTEMAEHARLRIDAGLQVYFCDPRSPWQRG
TNENTNGLLRQYFPKGTDLSAHSANDLAAVAAALNSRPRKTLNWKTPAEALDAVLAAVQDGVATTA
VRDVARRLGRAASTISRELRRNAATRSGGLDYRATTAQWHAERAARRPKPAKLAGNAALRTYVQERLAGTVATPGGSALPGPSVAWKGRRHGRRQSRRWG
RSWSPQQIAERLRLDFPGDTTMRISHEAIYQALYIQGRGALKRELTACLRTGRALRVPRARSLGRGRSFVTPEVLISERPPEVEDRAVPGHWEGDLILGL
KSSAIGTLVERTTRFTMLLHLPPMDGHGVTPRAKNGPALAGHGAQAVREAIAGTIARLPEQLRRSLTWDQGTEMAEHARLRIDAGLQVYFCDPRSPWQRG
TNENTNGLLRQYFPKGTDLSAHSANDLAAVAAALNSRPRKTLNWKTPAEALDAVLAAVQDGVATTA
Blast result :
Comments
ISMtsp4 is 90% aa similar to ISMdi25.
References
1] Ming-Chun Lee and David Robinson (2009) Direct submission.
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E.,Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T.,Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M.,Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2008) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E.,Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T.,Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M.,Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2008) Direct submission GenBank.