ISMno6
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_011887 | ND | Methylobacterium nodulans | Methylobacterium nodulans ORS 2060 plasmid pMNOD02 Methylobacterium nodulans ORS 2060 plasmid pMNOD01 |
DNA section
IS Length : 816 bp
Ends
IR Length : 15
IRL : GGGCTTGTCACGTTGGTTGGGCGCTGGCTTGCGGAGGGCTGGCGCGCAGC
IRR : GGGCTTGTCACGTTGTCGGAATAGCCGCATGAAAACCGACGTTGGCCCCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGGGAAAATGCTGTCCGACA | TTCGGGGGCAGTGGGAAGCC | 0 | |
CCGGTGCCGAGCATCAGCGG | GGGCGATCAGCTCGTGAATC | 0 | |
GGAAGTGCCGGCCCTTGAAG | CCGAGAATGCGGCAGGTACG | 0 | |
CCATGATCCTCACCGCCCTC | TGGCGGCCGTCTCCGCCTCC | 0 | |
CCAATCGTAGTCGACGCCGG | GGCCACTGAGCTAAACCGCT | 0 |
DNA sequence
GGGCTTGTCACGTTGGTTGGGCGCTGGCTTGCGGAGGGCTGGCGCGCAGCGTAGCCGGGTCGCATGACCGTGCTCTCGTACTCCGGCTACCGCTTCCCGC
GTGACATCATCCAACGCGCTGTGTGGTTGTATCTCCGGTTCACCCTCCGCTTTCGCGACGTCGAAGAACTCCTGGCCGAGCGGGGGATCACAGTGACGTA
CGAGAGCATCCGACGCTGGGTTCTCACCTTCGGTCCGACGATCGCACGCGGGCTGCGAGCCCGCCGCCCCAAGCCGCACGCGCGATGGCACCTCGACGAG
GTGTTCGTGCGCATCAGCGGCACGCAGATGGACCTGTGGCGGGCCGTGGACGCCGAAGGCGAGGTGCTGGACGTGCTGCTCCAGACCAAGCGGGACAGGC
GCGCGGCTCAGAAGCTGATGCGCAAGCTTCTGAAGAAGCAGGGCATGGCACCGGAGACCTGGGTCACGGACAAGTGCCCGGCCTACGGAGCCGCGCTTCG
TGAGATGAAGCTGAGCCGAGTGGATCACGTCCAGCGCAAGCGGGCGAACAACCGGGCGGAGAGCTCGCATGTGCCGGTGCGACGACGAGAGGCGAAGTTG
CAGGGCTTCGAGTCGCCTGGCTCAGCCCAGCGGGTCTTGTCGATGCCCGCGGCCACCTACAACACCTTCACCGTTCCTCGTCACCTCGTCTCGGCTCGCA
CGCACCGGCTCTTCCGAGCCGAGGCGTTCGCGATGTGGCGCGGTGCGGCGGGCGTGCCGGCCTGAAAGGGGCCAACGTCGGTTTTCATGCGGCTATTCCG
ACAACGTGACAAGCCC
GTGACATCATCCAACGCGCTGTGTGGTTGTATCTCCGGTTCACCCTCCGCTTTCGCGACGTCGAAGAACTCCTGGCCGAGCGGGGGATCACAGTGACGTA
CGAGAGCATCCGACGCTGGGTTCTCACCTTCGGTCCGACGATCGCACGCGGGCTGCGAGCCCGCCGCCCCAAGCCGCACGCGCGATGGCACCTCGACGAG
GTGTTCGTGCGCATCAGCGGCACGCAGATGGACCTGTGGCGGGCCGTGGACGCCGAAGGCGAGGTGCTGGACGTGCTGCTCCAGACCAAGCGGGACAGGC
GCGCGGCTCAGAAGCTGATGCGCAAGCTTCTGAAGAAGCAGGGCATGGCACCGGAGACCTGGGTCACGGACAAGTGCCCGGCCTACGGAGCCGCGCTTCG
TGAGATGAAGCTGAGCCGAGTGGATCACGTCCAGCGCAAGCGGGCGAACAACCGGGCGGAGAGCTCGCATGTGCCGGTGCGACGACGAGAGGCGAAGTTG
CAGGGCTTCGAGTCGCCTGGCTCAGCCCAGCGGGTCTTGTCGATGCCCGCGGCCACCTACAACACCTTCACCGTTCCTCGTCACCTCGTCTCGGCTCGCA
CGCACCGGCTCTTCCGAGCCGAGGCGTTCGCGATGTGGCGCGGTGCGGCGGGCGTGCCGGCCTGAAAGGGGCCAACGTCGGTTTTCATGCGGCTATTCCG
ACAACGTGACAAGCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
702 bp | 233 aa | 64 | 765 | + | No |
Chemistry : DDE
ORF sequence :
MTVLSYSGYRFPRDIIQRAVWLYLRFTLRFRDVEELLAERGITVTYESIRRWVLTFGPTIARGLRARRPKPHARWHLDEVFVRISGTQMDLWRAVDAEGE
VLDVLLQTKRDRRAAQKLMRKLLKKQGMAPETWVTDKCPAYGAALREMKLSRVDHVQRKRANNRAESSHVPVRRREAKLQGFESPGSAQRVLSMPAATYN
TFTVPRHLVSARTHRLFRAEAFAMWRGAAGVPA
VLDVLLQTKRDRRAAQKLMRKLLKKQGMAPETWVTDKCPAYGAALREMKLSRVDHVQRKRANNRAESSHVPVRRREAKLQGFESPGSAQRVLSMPAATYN
TFTVPRHLVSARTHRLFRAEAFAMWRGAAGVPA
Blast result :
Comments
ISMno6 is 71% aa similar to ISApr5.
References
1] Ming-Chun Lee and David Robinson (2009) Direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.