ISMno13
- Family IS66
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_011894 | ND | Methylobacterium nodulans | Methylobacterium nodulans ORS 2060 Methylobacterium nodulans ORS 2060 plasmid pMNOD01 |
DNA section
IS Length : 2459 bp
Ends
IR Length : 25/42
IRL : GTAAGCGTCGTTTTGGAGGCACCTTTCGGGAGCTCGGCTGAGCATGGGAT
IRR : GTAAGCGTCTTCCTCAGGCCACATCCCTGAGCGTGGGCGTGACCGGGTAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCGGGATCGC | CGTGGGAG | AACGGGTATT | 8 |
AGGCGCTTTC | ATCCGAACGG | 0 | |
TGGCCCTCAC | ATCCGAACGG | 0 |
DNA sequence
GTAAGCGTCGTTTTGGAGGCACCTTTCGGGAGCTCGGCTGAGCATGGGATACGGAGCGGGTCAGGAGCTCCGTCCTATGTCGATGTCAGAGCGTATGGCT
ATGTCGGAGCCGGTCCGGCGCCTGGAGCTGTTCACCGGGGCCGGCCGGCGGCGGACGTGGTCGGAGGATGAGAAGGCGGCCATTGTCGCCGAGAGCGAGG
CGCCGAACACCTCGATCAGCGCGGTAGCGCGCCGGCATGGCCTGAGCGCCTCGCAGCTGTTCACGTGGCGGCGCTTGGCGCGCCAAGCGGCGATGGATGA
TCAGCAGGCCGAGCTGCGGTTCGTGCCGGCCGTGCTGATCTCGGAACCGCAGGAGCCGGCGTGTGCAGAGACGAGCCCCAAGCCGCGTTGGCGCCACGGC
TGTCACGGCATTGAGGTCGAAGTAGCTGGCGCCACGGTCCGCATCGGCGGGGAGGCGAGCGAGGCTCAGATTGCGGCGGTGATCCGGGCGCTGAAGGTCT
CGGCATGATCGGGCCGGCTGGGACAGTGCGCGTGATGCTGGCGACGCGGCCGGTGGACTTCCGCAAAGGTATCGACGGGCTGGCCGCGCTGGTGCGCGAG
GCGATGGGCGCGGATCCGTTCTCCGGCACGGTCTATGTGTTCCGCTCGAAGCGGGCAGATCGGACCAAGCTTTTGTTCTGGGATGGAAGCGGGGTGGTTC
TCGCGGCCAAGCGTCTGGAGGACGGTCAATTCTGCTGGCCGAAGGCTCAGGACGGCGTCGTGCGCCTCACGGCTGCGCAGCTCTCGGCCCTGCTCGAAGG
GCTGGACTGGAAGCGTGTCCACGAGGCTCGTCAGGTGAGCGCGCCAGCGGTGGCAGGCTGAGCAAAAAGAACGGCGCGAGGGGACGTCGTACTGGTAAGT
GGCTGAGTGATCTGATCTAATCCGCTTTGTGGCTGCGCCTGCTTCACCCTCGCCCGACGATCCCGAGACGCTCAAGGCGCTGCTCGCCGAGGAGCGGGCC
GAGAACGAGCGGCTGCGCCAGATCATCAAGGCGATGCAGCGTCATCGCTTCGGCCGTCGCGCCGAGAGCCTGCCCGAGGACCAGCTCCTGCTCGGGCTGG
AGGAGGCCGAGCAGGTCGAAGCCGAGGGTCTTGCGGCCGAGGAAACCGCGCCGGCGGTGAGGGCCGAGCGTACAGCGCGCCGGCGCAACAATCGCGGGGC
CCTGCCCGCCCATCTGCCGCGCGTCGAGCGCGTGGTCGACATCGAGAGCCCCGTCTGCCCCTGCTGCTCGGGCAGCCTGCACCGGATCGGCGAGGACGTG
TCCGAGCGCCTCGACATCGTACCGGCCCAAGTCCGGGTCATTGTGATCCGGCGCCCGCGTTACGCGTGCCGTGCCTGCGAGGCTATTGTGCTGCAGGCGT
CCGCGCCGGCGCGGCTGATCGAGGGCGGGTTGCCCACCGACGACCTCGTCGCGCACGTGCTCGTCGCCAAGTACGCCGACCACCTGCCACTCTATCGTCA
GGCACAGATCTTCGCGCGTCAGGGCATAGCTCTCGACCGCTCGACGCTCGCGGATTGGGTCGGCCGTGCTGCGTTCCTGCTGCGGCCGGTCCACGCGCGG
CTGCTGGGGAGGCTGAAGGCTTCGGGCAAGCTGTTTGCCGACGAGACCAGCGCGCCGGTGCTCGATCCCGGACGCGGCCGCACCAAGACAGGCCAGCTCT
GGGCGTATGCCCGCGACGACCGGCCCTGGGGCGGCACCGATCCGCCGGGCGTTGCCTACGTCTACGCACCCGACCGCACGGCCAAGCAGCCCATCGCGCA
TCTTGCCGGCTTCCGGGGCGTGCTGCAGGTCGATGGCTATGACGGCTACAAGGCGCTGGCCAGGCAAGGCGAGGTCCGGCTCGCCTACTGCTGGAGCCAT
GTACGGCGGGCGTTCTACGATCTTGATGGGCCGATCGCGGCCGAGGTGCTCACGCGCATCGCGGGCCTTTACCGGATCGAGGCCGAGATCCGCGGCCGTC
CTGCCGAGGAGCGCCGCACCGCACGTCAGGCGCGCAGCCGTCCCATCCTGGAGGCCCTAGAGCCCTGGCTGCGGGAGAAGCTCGCCCTCATCAGCCAGAA
GAGCAAGCTGGCCGAAGCGATCCGCTACGCGCTGAGCCGCTGGGCTGGCCTGAGCCTGTTCCTCGATGACGGGCGGGTCGAACTCGACACCAACGTGGTC
GAGCGCGCGATCCGTCCCCTGGCCCTGACGAGAAAGAATGCTCTCTTCGCCGGCTCGGATGGCGGGGCCGCGCACTGGGCGGTGATCGCCTCGCTGATCG
AGACCTGCAAGCTCACGGGCGTCGGACCGCAGGCCTATCTTGCCGACGTGATCACCCGCATCATCGAGGGCCATCCCAACAGCCGCATCGACGAGCTGCT
GCCCTGGGCCTACCCGGTCACGCCCACGCTCAGGGATGTGGCCTGAGGAAGACGCTTAC
ATGTCGGAGCCGGTCCGGCGCCTGGAGCTGTTCACCGGGGCCGGCCGGCGGCGGACGTGGTCGGAGGATGAGAAGGCGGCCATTGTCGCCGAGAGCGAGG
CGCCGAACACCTCGATCAGCGCGGTAGCGCGCCGGCATGGCCTGAGCGCCTCGCAGCTGTTCACGTGGCGGCGCTTGGCGCGCCAAGCGGCGATGGATGA
TCAGCAGGCCGAGCTGCGGTTCGTGCCGGCCGTGCTGATCTCGGAACCGCAGGAGCCGGCGTGTGCAGAGACGAGCCCCAAGCCGCGTTGGCGCCACGGC
TGTCACGGCATTGAGGTCGAAGTAGCTGGCGCCACGGTCCGCATCGGCGGGGAGGCGAGCGAGGCTCAGATTGCGGCGGTGATCCGGGCGCTGAAGGTCT
CGGCATGATCGGGCCGGCTGGGACAGTGCGCGTGATGCTGGCGACGCGGCCGGTGGACTTCCGCAAAGGTATCGACGGGCTGGCCGCGCTGGTGCGCGAG
GCGATGGGCGCGGATCCGTTCTCCGGCACGGTCTATGTGTTCCGCTCGAAGCGGGCAGATCGGACCAAGCTTTTGTTCTGGGATGGAAGCGGGGTGGTTC
TCGCGGCCAAGCGTCTGGAGGACGGTCAATTCTGCTGGCCGAAGGCTCAGGACGGCGTCGTGCGCCTCACGGCTGCGCAGCTCTCGGCCCTGCTCGAAGG
GCTGGACTGGAAGCGTGTCCACGAGGCTCGTCAGGTGAGCGCGCCAGCGGTGGCAGGCTGAGCAAAAAGAACGGCGCGAGGGGACGTCGTACTGGTAAGT
GGCTGAGTGATCTGATCTAATCCGCTTTGTGGCTGCGCCTGCTTCACCCTCGCCCGACGATCCCGAGACGCTCAAGGCGCTGCTCGCCGAGGAGCGGGCC
GAGAACGAGCGGCTGCGCCAGATCATCAAGGCGATGCAGCGTCATCGCTTCGGCCGTCGCGCCGAGAGCCTGCCCGAGGACCAGCTCCTGCTCGGGCTGG
AGGAGGCCGAGCAGGTCGAAGCCGAGGGTCTTGCGGCCGAGGAAACCGCGCCGGCGGTGAGGGCCGAGCGTACAGCGCGCCGGCGCAACAATCGCGGGGC
CCTGCCCGCCCATCTGCCGCGCGTCGAGCGCGTGGTCGACATCGAGAGCCCCGTCTGCCCCTGCTGCTCGGGCAGCCTGCACCGGATCGGCGAGGACGTG
TCCGAGCGCCTCGACATCGTACCGGCCCAAGTCCGGGTCATTGTGATCCGGCGCCCGCGTTACGCGTGCCGTGCCTGCGAGGCTATTGTGCTGCAGGCGT
CCGCGCCGGCGCGGCTGATCGAGGGCGGGTTGCCCACCGACGACCTCGTCGCGCACGTGCTCGTCGCCAAGTACGCCGACCACCTGCCACTCTATCGTCA
GGCACAGATCTTCGCGCGTCAGGGCATAGCTCTCGACCGCTCGACGCTCGCGGATTGGGTCGGCCGTGCTGCGTTCCTGCTGCGGCCGGTCCACGCGCGG
CTGCTGGGGAGGCTGAAGGCTTCGGGCAAGCTGTTTGCCGACGAGACCAGCGCGCCGGTGCTCGATCCCGGACGCGGCCGCACCAAGACAGGCCAGCTCT
GGGCGTATGCCCGCGACGACCGGCCCTGGGGCGGCACCGATCCGCCGGGCGTTGCCTACGTCTACGCACCCGACCGCACGGCCAAGCAGCCCATCGCGCA
TCTTGCCGGCTTCCGGGGCGTGCTGCAGGTCGATGGCTATGACGGCTACAAGGCGCTGGCCAGGCAAGGCGAGGTCCGGCTCGCCTACTGCTGGAGCCAT
GTACGGCGGGCGTTCTACGATCTTGATGGGCCGATCGCGGCCGAGGTGCTCACGCGCATCGCGGGCCTTTACCGGATCGAGGCCGAGATCCGCGGCCGTC
CTGCCGAGGAGCGCCGCACCGCACGTCAGGCGCGCAGCCGTCCCATCCTGGAGGCCCTAGAGCCCTGGCTGCGGGAGAAGCTCGCCCTCATCAGCCAGAA
GAGCAAGCTGGCCGAAGCGATCCGCTACGCGCTGAGCCGCTGGGCTGGCCTGAGCCTGTTCCTCGATGACGGGCGGGTCGAACTCGACACCAACGTGGTC
GAGCGCGCGATCCGTCCCCTGGCCCTGACGAGAAAGAATGCTCTCTTCGCCGGCTCGGATGGCGGGGCCGCGCACTGGGCGGTGATCGCCTCGCTGATCG
AGACCTGCAAGCTCACGGGCGTCGGACCGCAGGCCTATCTTGCCGACGTGATCACCCGCATCATCGAGGGCCATCCCAACAGCCGCATCGACGAGCTGCT
GCCCTGGGCCTACCCGGTCACGCCCACGCTCAGGGATGTGGCCTGAGGAAGACGCTTAC
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
432 bp | 143 aa | 77 | 508 | + | No |
AG : IS66 TnpA
ORF sequence :
MSMSERMAMSEPVRRLELFTGAGRRRTWSEDEKAAIVAESEAPNTSISAVARRHGLSASQLFTWRRLARQAAMDDQQAELRFVPAVLISEPQEPACAETS
PKPRWRHGCHGIEVEVAGATVRIGGEASEAQIAAVIRALKVSA
PKPRWRHGCHGIEVEVAGATVRIGGEASEAQIAAVIRALKVSA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
357 bp | 118 aa | 505 | 861 | + | No |
AG : IS66 TnpB
ORF sequence :
MIGPAGTVRVMLATRPVDFRKGIDGLAALVREAMGADPFSGTVYVFRSKRADRTKLLFWDGSGVVLAAKRLEDGQFCWPKAQDGVVRLTAAQLSALLEGL
DWKRVHEARQVSAPAVAG
DWKRVHEARQVSAPAVAG
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1518 bp | 505 aa | 929 | 2446 | + | No |
Chemistry : DDE
ORF sequence :
VAAPASPSPDDPETLKALLAEERAENERLRQIIKAMQRHRFGRRAESLPEDQLLLGLEEAEQVEAEGLAAEETAPAVRAERTARRRNNRGALPAHLPRVE
RVVDIESPVCPCCSGSLHRIGEDVSERLDIVPAQVRVIVIRRPRYACRACEAIVLQASAPARLIEGGLPTDDLVAHVLVAKYADHLPLYRQAQIFARQGI
ALDRSTLADWVGRAAFLLRPVHARLLGRLKASGKLFADETSAPVLDPGRGRTKTGQLWAYARDDRPWGGTDPPGVAYVYAPDRTAKQPIAHLAGFRGVLQ
VDGYDGYKALARQGEVRLAYCWSHVRRAFYDLDGPIAAEVLTRIAGLYRIEAEIRGRPAEERRTARQARSRPILEALEPWLREKLALISQKSKLAEAIRY
ALSRWAGLSLFLDDGRVELDTNVVERAIRPLALTRKNALFAGSDGGAAHWAVIASLIETCKLTGVGPQAYLADVITRIIEGHPNSRIDELLPWAYPVTPT
LRDVA
RVVDIESPVCPCCSGSLHRIGEDVSERLDIVPAQVRVIVIRRPRYACRACEAIVLQASAPARLIEGGLPTDDLVAHVLVAKYADHLPLYRQAQIFARQGI
ALDRSTLADWVGRAAFLLRPVHARLLGRLKASGKLFADETSAPVLDPGRGRTKTGQLWAYARDDRPWGGTDPPGVAYVYAPDRTAKQPIAHLAGFRGVLQ
VDGYDGYKALARQGEVRLAYCWSHVRRAFYDLDGPIAAEVLTRIAGLYRIEAEIRGRPAEERRTARQARSRPILEALEPWLREKLALISQKSKLAEAIRY
ALSRWAGLSLFLDDGRVELDTNVVERAIRPLALTRKNALFAGSDGGAAHWAVIASLIETCKLTGVGPQAYLADVITRIIEGHPNSRIDELLPWAYPVTPT
LRDVA
Blast result :
Comments
ISMno13 is 64%(orfA), 88%(orfB) and 85%(orfC) aa similar to ISAzca2.
References
1] Ming-Chun Lee and David Robinson (2009) Direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.