ISMch6
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_011758 | ND | Methylobacterium chloromethanicum | Methylobacterium chloromethanicum CM4 plasmid pMCHL01 |
DNA section
IS Length : 1379 bp
Ends
Left end : AGTCAGAAGATCGGTGCCAGTTCCCGGGCGGTCTGACCCGCACAGCGATGGACCGTCGGTTAAGCTGGCGCCGCAAGGCGTCCTGGTGTGGCCTGACCCG
Right end : CTGAAGCGCTACATCGCCCGGGAGGTGTTCACCCTCATCACCCGCAGGCAGAAGGCGATCCGTCAGACCCGCATCGCCGCTTGACACATAGAAGGGCGTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCACTCGGAC | CAGGGCTCGC | 0 |
DNA sequence
AGTCAGAAGATCGGTGCCAGTTCCCGGGCGGTCTGACCCGCACAGCGATGGACCGTCGGTTAAGCTGGCGCCGCAAGGCGTCCTGGTGTGGCCTGACCCG
CACTCTGATCGACCGAACGTGTCCTTCCCCGGACCTGTCGGCCGCCCGGGAACGCCCTGCGGTGGGGTTTTACCTCGCCGATGCCTGTGACCCGAGAAGG
GCCTGACCGTCTGGTCTCGTGACTGTCCTGTCCGCGCATCCGGTCGTGGTGAAGCCGTCAGGCTCGATCGCCAGGAGGATGGGATGAGTGCGCAGGAAGT
TCGGGAACGACACGTCGTCGGGGGTGTCGACACACATAAGGATCTGCACGTGGCCGCGGTCGTCGACGACCGGGATCGGGTTCTGGCGAGCGCCAGCTTT
GATGCGACCCGCCAGGGCTATCGGCAGATGCTGGCCTGGATGCGTTCGTTCGGATCGCTGCAACGCGTTGGGGTCGAGTCGACCGGCAGCTATGGTGCCG
GCCTGCTCCGCTTCCTCCAGCAGGCCGGGATCGAGGTGCTGGAGGTGACCGCCCCCGACGCCCAGGATCGGCGGCGTCGGGGCAAGAACGACGACTTCGA
TGCCCAGAGTGCGGCGCACGCCGCCTTCGCCGGCACCCGCACCGTGACGCCGCGCACCCGGGACGGCATGGTCGAGTCCTTGCGCATCCTGAGCGCGTGC
CGGAAGACGGCGGTCGCGGCCCGACGCATTGCCCTGCAGATGATCCACAACACCATCGTCTGCGCGCCCGATGCCCTGCGCGAGACGCTGCGCCGGATGA
CCCGGATGCAGCTCGTGCGGACCCTGGCGGCGTGGCGGCCCGATCTGAGCGCCTACCGCGACGTCGAGGCCGCTTACCGGATCGGCCTGAAGTCGTTGGC
GCGGCGCTACCTGGAACTGCACGACGAGATCGCCGATCTCGATGCCATGATCGGCACCATCGTCGACGAGCTTGCGCCGGAACTCGTGGCCCGCAACTCC
ATCGGCCGCAATGGCGCCGCGCAGCTGCTCCTGACGGCCGGCGATAACCCCGAGCGCCTGCGCTCTGAGGCAGGCTTCGCTGCGTTGTGTGGCGTGAGCC
CCGTGCCGGCCTCGTCGGGCAAGACGGTGCGCCATCGCCTCAACCGAGGCGGTGATCGCGCGGCCAACAGCGCACTGCACATCATTGCCATCGGGCGACT
GCGGACCGACGCGCGGACCAAGGCGTACATGGCCCGTCGCATCGCCGAGGGCCACTCCAAGCTGGAAGCGATCCGCTGCCTGAAGCGCTACATCGCCCGG
GAGGTGTTCACCCTCATCACCCGCAGGCAGAAGGCGATCCGTCAGACCCGCATCGCCGCTTGACACATAGAAGGGCGTC
CACTCTGATCGACCGAACGTGTCCTTCCCCGGACCTGTCGGCCGCCCGGGAACGCCCTGCGGTGGGGTTTTACCTCGCCGATGCCTGTGACCCGAGAAGG
GCCTGACCGTCTGGTCTCGTGACTGTCCTGTCCGCGCATCCGGTCGTGGTGAAGCCGTCAGGCTCGATCGCCAGGAGGATGGGATGAGTGCGCAGGAAGT
TCGGGAACGACACGTCGTCGGGGGTGTCGACACACATAAGGATCTGCACGTGGCCGCGGTCGTCGACGACCGGGATCGGGTTCTGGCGAGCGCCAGCTTT
GATGCGACCCGCCAGGGCTATCGGCAGATGCTGGCCTGGATGCGTTCGTTCGGATCGCTGCAACGCGTTGGGGTCGAGTCGACCGGCAGCTATGGTGCCG
GCCTGCTCCGCTTCCTCCAGCAGGCCGGGATCGAGGTGCTGGAGGTGACCGCCCCCGACGCCCAGGATCGGCGGCGTCGGGGCAAGAACGACGACTTCGA
TGCCCAGAGTGCGGCGCACGCCGCCTTCGCCGGCACCCGCACCGTGACGCCGCGCACCCGGGACGGCATGGTCGAGTCCTTGCGCATCCTGAGCGCGTGC
CGGAAGACGGCGGTCGCGGCCCGACGCATTGCCCTGCAGATGATCCACAACACCATCGTCTGCGCGCCCGATGCCCTGCGCGAGACGCTGCGCCGGATGA
CCCGGATGCAGCTCGTGCGGACCCTGGCGGCGTGGCGGCCCGATCTGAGCGCCTACCGCGACGTCGAGGCCGCTTACCGGATCGGCCTGAAGTCGTTGGC
GCGGCGCTACCTGGAACTGCACGACGAGATCGCCGATCTCGATGCCATGATCGGCACCATCGTCGACGAGCTTGCGCCGGAACTCGTGGCCCGCAACTCC
ATCGGCCGCAATGGCGCCGCGCAGCTGCTCCTGACGGCCGGCGATAACCCCGAGCGCCTGCGCTCTGAGGCAGGCTTCGCTGCGTTGTGTGGCGTGAGCC
CCGTGCCGGCCTCGTCGGGCAAGACGGTGCGCCATCGCCTCAACCGAGGCGGTGATCGCGCGGCCAACAGCGCACTGCACATCATTGCCATCGGGCGACT
GCGGACCGACGCGCGGACCAAGGCGTACATGGCCCGTCGCATCGCCGAGGGCCACTCCAAGCTGGAAGCGATCCGCTGCCTGAAGCGCTACATCGCCCGG
GAGGTGTTCACCCTCATCACCCGCAGGCAGAAGGCGATCCGTCAGACCCGCATCGCCGCTTGACACATAGAAGGGCGTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1080 bp | 359 aa | 284 | 1363 | + | No |
Chemistry : DEDD
ORF sequence :
MSAQEVRERHVVGGVDTHKDLHVAAVVDDRDRVLASASFDATRQGYRQMLAWMRSFGSLQRVGVESTGSYGAGLLRFLQQAGIEVLEVTAPDAQDRRRRG
KNDDFDAQSAAHAAFAGTRTVTPRTRDGMVESLRILSACRKTAVAARRIALQMIHNTIVCAPDALRETLRRMTRMQLVRTLAAWRPDLSAYRDVEAAYRI
GLKSLARRYLELHDEIADLDAMIGTIVDELAPELVARNSIGRNGAAQLLLTAGDNPERLRSEAGFAALCGVSPVPASSGKTVRHRLNRGGDRAANSALHI
IAIGRLRTDARTKAYMARRIAEGHSKLEAIRCLKRYIAREVFTLITRRQKAIRQTRIAA
KNDDFDAQSAAHAAFAGTRTVTPRTRDGMVESLRILSACRKTAVAARRIALQMIHNTIVCAPDALRETLRRMTRMQLVRTLAAWRPDLSAYRDVEAAYRI
GLKSLARRYLELHDEIADLDAMIGTIVDELAPELVARNSIGRNGAAQLLLTAGDNPERLRSEAGFAALCGVSPVPASSGKTVRHRLNRGGDRAANSALHI
IAIGRLRTDARTKAYMARRIAEGHSKLEAIRCLKRYIAREVFTLITRRQKAIRQTRIAA
Blast result :
Comments
ISMch6 is 84% aa similar to ISEc21.
References
1] Ming-Chun Lee and David Robinson, direct submission.