ISMch7
- Family IS701
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_011758 | ND | Methylobacterium chloromethanicum | Methylobacterium chloromethanicum CM4 plasmid pMCHL01 |
DNA section
IS Length : 1412 bp
Ends
IR Length : 18
IRL : CCTAGCATTACAGTTGCAGGGTAAGACTCCTATTTGAGGGTTTTCGGATG
IRR : CCTAGCATTACAGTTGCATTCGCGCTTTGAGATGGGCCTGTCGAGCGGTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTACAGCCCA | GCCTGTCGTC | 0 |
DNA sequence
CCTAGCATTACAGTTGCAGGGTAAGACTCCTATTTGAGGGTTTTCGGATGGGAGAGTGCGATGCCCTCAGCCTCGCTCGAGTCCACGCTTGAACTCTGGT
CGACGACCCTGCGGCAGACCAAGCAGCGCATCCGCCCGCTGTTTGCCGCCCCGAGTGTCGCCGCCTCGGCCAACGCCTTCCTGGACGGACTGCTCGGCGG
TGAGCGGCGCAAGACCGGCTGGATGCGCGCCGAAGCTGCCGGTGACCCGGGTCCCTGGCGTCAGCAGGCCATCCTCGGTCGCACACACTGGGATGCAGAG
GCGCTGCGCGACGTGGTGCGCGACGACGTCGTCGAGACGCTCGCTTCACCGGATGCGGTTCTCGTGATCGACGAGACTGGCTTTCTCAAACAGGGCAAAG
CCTCGTGCGGGGTGGGCCGGCAGTACACGGGCTCGGCCGGCAAGATCACCAACTGCCAGATCGGAGTGTTTGCCTCCTACGTCTCGGATCAGGGCCATGC
CTTCATCGATCGCCGGCTGTACCTACCCAAGGCTTGGACTGAGGATCCAGCCCGGCTGCGAGCCGCGCATGTGCCCGAGGCTGTCGCGTTCGCCACCAAG
CCGAGATTGGCGCTCGCTATGATCGAGCGGGCCGTCCGGGCAGAGGTGCCGTTCGCGTGGGTAGCGGCCGACAGCATCTACGGCGTGGGCGAGATCGAAC
TGGCGCTGCGGCGGGCCTACAAGGGCTACGTGCTCGGCGTCACCGGTCAGCATCGGTTCTGGTCCTGGGACGCAAATCTCGACCTTGCGGGCACCGCCGA
GAACATCGCCAAGGGTATCTCCGACCAAGACTGGCTGCGCCTCTCGGCCGGAGCGGGCACCAAGGGAGCGCGGCTGTTCGACTGGGCCTATCTACCGCTG
GCCACACTCCGGGCTGACGCGCTCGACGCCGCGCTCGATCAGAGCTTGTGGACGCGCGGCCTGCTGGTGCGGCGCAGCCTGTCGGATGGGGCGCTGGCGT
ACTTCACGACTTGGTGCCCGGCCGGTACCCCGGTCGAGAAGCTGGTGATGGTAGAGGGCCGCCGCTGGGCGATCGAGGACGCGTTCGAGACCGCCAAGAC
GGAACTCGGGCTGGCCCACAACGAGAGCCGTTCGTGGCACGGCTGGCACCGGCACGTCAGCCTGGTGATGCTGGCCTTCGCGATGCTGGCGCGGGTGCGC
CGGCTGGCCAACGGGCCGCCCCCAAAAACGACGCTCATCGCCAAGCTCGCAGGTGCCGTGGTCCATTCAGGAGATCCGGCGCGTGGCGATGCGGCTGGCG
CAACGGCGCATTGAACCCGCCTTCGTGCTCGCATGGTCAGCTTGGCGACGCGCCCACCAAGCTACCGCTCGACAGGCCCATCTCAAAGCGCGAATGCAAC
TGTAATGCTAGG
CGACGACCCTGCGGCAGACCAAGCAGCGCATCCGCCCGCTGTTTGCCGCCCCGAGTGTCGCCGCCTCGGCCAACGCCTTCCTGGACGGACTGCTCGGCGG
TGAGCGGCGCAAGACCGGCTGGATGCGCGCCGAAGCTGCCGGTGACCCGGGTCCCTGGCGTCAGCAGGCCATCCTCGGTCGCACACACTGGGATGCAGAG
GCGCTGCGCGACGTGGTGCGCGACGACGTCGTCGAGACGCTCGCTTCACCGGATGCGGTTCTCGTGATCGACGAGACTGGCTTTCTCAAACAGGGCAAAG
CCTCGTGCGGGGTGGGCCGGCAGTACACGGGCTCGGCCGGCAAGATCACCAACTGCCAGATCGGAGTGTTTGCCTCCTACGTCTCGGATCAGGGCCATGC
CTTCATCGATCGCCGGCTGTACCTACCCAAGGCTTGGACTGAGGATCCAGCCCGGCTGCGAGCCGCGCATGTGCCCGAGGCTGTCGCGTTCGCCACCAAG
CCGAGATTGGCGCTCGCTATGATCGAGCGGGCCGTCCGGGCAGAGGTGCCGTTCGCGTGGGTAGCGGCCGACAGCATCTACGGCGTGGGCGAGATCGAAC
TGGCGCTGCGGCGGGCCTACAAGGGCTACGTGCTCGGCGTCACCGGTCAGCATCGGTTCTGGTCCTGGGACGCAAATCTCGACCTTGCGGGCACCGCCGA
GAACATCGCCAAGGGTATCTCCGACCAAGACTGGCTGCGCCTCTCGGCCGGAGCGGGCACCAAGGGAGCGCGGCTGTTCGACTGGGCCTATCTACCGCTG
GCCACACTCCGGGCTGACGCGCTCGACGCCGCGCTCGATCAGAGCTTGTGGACGCGCGGCCTGCTGGTGCGGCGCAGCCTGTCGGATGGGGCGCTGGCGT
ACTTCACGACTTGGTGCCCGGCCGGTACCCCGGTCGAGAAGCTGGTGATGGTAGAGGGCCGCCGCTGGGCGATCGAGGACGCGTTCGAGACCGCCAAGAC
GGAACTCGGGCTGGCCCACAACGAGAGCCGTTCGTGGCACGGCTGGCACCGGCACGTCAGCCTGGTGATGCTGGCCTTCGCGATGCTGGCGCGGGTGCGC
CGGCTGGCCAACGGGCCGCCCCCAAAAACGACGCTCATCGCCAAGCTCGCAGGTGCCGTGGTCCATTCAGGAGATCCGGCGCGTGGCGATGCGGCTGGCG
CAACGGCGCATTGAACCCGCCTTCGTGCTCGCATGGTCAGCTTGGCGACGCGCCCACCAAGCTACCGCTCGACAGGCCCATCTCAAAGCGCGAATGCAAC
TGTAATGCTAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1254 bp | 417 aa | 61 | 1314 | + | No |
Chemistry : DDE
ORF sequence :
MPSASLESTLELWSTTLRQTKQRIRPLFAAPSVAASANAFLDGLLGGERRKTGWMRAEAAGDPGPWRQQAILGRTHWDAEALRDVVRDDVVETLASPDAV
LVIDETGFLKQGKASCGVGRQYTGSAGKITNCQIGVFASYVSDQGHAFIDRRLYLPKAWTEDPARLRAAHVPEAVAFATKPRLALAMIERAVRAEVPFAW
VAADSIYGVGEIELALRRAYKGYVLGVTGQHRFWSWDANLDLAGTAENIAKGISDQDWLRLSAGAGTKGARLFDWAYLPLATLRADALDAALDQSLWTRG
LLVRRSLSDGALAYFTTWCPAGTPVEKLVMVEGRRWAIEDAFETAKTELGLAHNESRSWHGWHRHVSLVMLAFAMLARVRRLANGPPPKTTLIAKLAGAV
VHSGDPARGDAAGATAH
LVIDETGFLKQGKASCGVGRQYTGSAGKITNCQIGVFASYVSDQGHAFIDRRLYLPKAWTEDPARLRAAHVPEAVAFATKPRLALAMIERAVRAEVPFAW
VAADSIYGVGEIELALRRAYKGYVLGVTGQHRFWSWDANLDLAGTAENIAKGISDQDWLRLSAGAGTKGARLFDWAYLPLATLRADALDAALDQSLWTRG
LLVRRSLSDGALAYFTTWCPAGTPVEKLVMVEGRRWAIEDAFETAKTELGLAHNESRSWHGWHRHVSLVMLAFAMLARVRRLANGPPPKTTLIAKLAGAV
VHSGDPARGDAAGATAH
Blast result :
Comments
ISMch7 is 80% aa similar to ISRm31.
References
1] Ming-Chun Lee and David Robinson, direct submission.