ISMch4
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_011757 | ND | Methylobacterium chloromethanicum | Methylobacterium chloromethanicum CM4 |
DNA section
IS Length : 1631 bp
Ends
IR Length : 14
IRL : gtagttGCCGTGTTGCCCGCCAGCTCCCGTAATCGAGACGAGGAGACAGG
IRR : ---cccGCCGTGTTGCCGGCGACTTCCTCCGGGCCCTTGCTGCCGCTGTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCGCGGATCC | TTGCCTTCTC | 0 |
DNA sequence
GTAGTTGCCGTGTTGCCCGCCAGCTCCCGTAATCGAGACGAGGAGACAGGCTCATGCGGGTTGTGGGATTGGACATCCACCGCGTTTTCGCCGAGGCGGT
GATGCTGTAGAACGGCGCGGTCCGGCGTCTTGGTCGGATCGGCATGACGCGCGATCACCTGACGGCGTTCGCCAAGACGCTGACGCACGACGACCATGTC
GTGGTCGAGGCGACCGGCAACGCCAGCGCGGTCGCGGAGGTGATCCGGCCGCATGTCGGCCGGGTGGTGATCGCCAACCCGCGCCAGGTGCGGCTGATCG
CCGAGGCGCGGATCAAGACCGACGTCATCGACGCGACCGTGCTGGCGCGGCTCTATGCCAGTGGCTTTCTGCCGGAGGTCTGGATCCCGGACGAGGCAAC
GCTTGCGCTCCGGCGCCAGGTCACACGCCGCACCCAGATCGTCCGGCAGCGGACGCGGCTGAAGACGATGGTGCAGTCGATCCTGCATGCGCATCTCGTG
CCGCCCTGTCCCCACGCAGATCTGTTCGGGCCGCGGGGACGGACCTGGCTGCTGGCACAGCCGCTGCCCGGCGACGAGAGCGATGCCGTCGCCCGGCACC
TGCGTGAGTACGACCGGCTGAGTGAGGACTTGAAGGTCGTCGAGCGTGAACTGGCGCGCGAGGCCCGCGCCGACGCGAACGTCACGCGGCTGATGACGAT
CCCAGGCATCGACCTGGTGGTCGCCGTCGGGCTGATCGCCGCCATCGGACCCGTGGCGCGGTTCGCCGGCCCGGATCGGCTTGTGGCCTATCTTGGGCTG
AACCCGAGCGTGCATCAGTCCGGATCCGGCAAGCCACGGCATGGACGCATCACCAAGCAGGGGCGCAGCCACGCCCCCACGATGTTGGTCGAGGCGGCTT
GGCAGGCGGCGCGGGGGCCCGGTCCACTGCGCGCCTTCTTCCAGCGCGTGTCGGCGCGACGTGGGCCTCACGTCGCGGCCGTGGCGGTCGCACGCAAGCT
GGCGGTGATCATCTGGCACCTGCTCACACGGGGTGAGGACTACGCCTGGGTGCGTCCTGCGCTCCACGCCAAGAAGCTGCGGGAACTGGAGCTGCGCTCG
GGCGAGCCGGCACGGCGTGGTCAGCGCGGAACGGCCTACGCCTACAACCTGACCCGCGTCCGACAGGAGGAGCGGCGGCGTGTCGAGCAGGCGGAGGTCG
CCTACCGACACCTGACCGAGGGCTGGAGCCGGCGTGGGCGACGCGTACCCACGGGCGCCGCAAAGGAGGAGCGACTATGAAGACGGCGCGGCCGGGCTTG
CGCCTCGAACCCGGCTCTTCGTCACGCGGTCGCCCGTGAGCGGCAACAAAATAGCACGGATCGCAACAAGGGGACTGTTCAACCTCATCCGTCGTCCAAG
GGTGACGCGGCTTGGTGAGGCGATGCTCGATGTCGAGGTCGGCGCAGGCGCCCTCGAAGGAGTGGCACCGAAAGAGAATCTTATCGGCGCGCATCTGCTT
GATCTCGGCCGGCGTCCAAGTCTCGCCGGAGGGATCGGTGAAGTGCGTGCCGTTATCGGTCAGCACGGTGAGGATCTTGTAGGGAACAGCGGCAGCAAGG
GCCCGGAGGAAGTCGCCGGCAACACGGCGGG
GATGCTGTAGAACGGCGCGGTCCGGCGTCTTGGTCGGATCGGCATGACGCGCGATCACCTGACGGCGTTCGCCAAGACGCTGACGCACGACGACCATGTC
GTGGTCGAGGCGACCGGCAACGCCAGCGCGGTCGCGGAGGTGATCCGGCCGCATGTCGGCCGGGTGGTGATCGCCAACCCGCGCCAGGTGCGGCTGATCG
CCGAGGCGCGGATCAAGACCGACGTCATCGACGCGACCGTGCTGGCGCGGCTCTATGCCAGTGGCTTTCTGCCGGAGGTCTGGATCCCGGACGAGGCAAC
GCTTGCGCTCCGGCGCCAGGTCACACGCCGCACCCAGATCGTCCGGCAGCGGACGCGGCTGAAGACGATGGTGCAGTCGATCCTGCATGCGCATCTCGTG
CCGCCCTGTCCCCACGCAGATCTGTTCGGGCCGCGGGGACGGACCTGGCTGCTGGCACAGCCGCTGCCCGGCGACGAGAGCGATGCCGTCGCCCGGCACC
TGCGTGAGTACGACCGGCTGAGTGAGGACTTGAAGGTCGTCGAGCGTGAACTGGCGCGCGAGGCCCGCGCCGACGCGAACGTCACGCGGCTGATGACGAT
CCCAGGCATCGACCTGGTGGTCGCCGTCGGGCTGATCGCCGCCATCGGACCCGTGGCGCGGTTCGCCGGCCCGGATCGGCTTGTGGCCTATCTTGGGCTG
AACCCGAGCGTGCATCAGTCCGGATCCGGCAAGCCACGGCATGGACGCATCACCAAGCAGGGGCGCAGCCACGCCCCCACGATGTTGGTCGAGGCGGCTT
GGCAGGCGGCGCGGGGGCCCGGTCCACTGCGCGCCTTCTTCCAGCGCGTGTCGGCGCGACGTGGGCCTCACGTCGCGGCCGTGGCGGTCGCACGCAAGCT
GGCGGTGATCATCTGGCACCTGCTCACACGGGGTGAGGACTACGCCTGGGTGCGTCCTGCGCTCCACGCCAAGAAGCTGCGGGAACTGGAGCTGCGCTCG
GGCGAGCCGGCACGGCGTGGTCAGCGCGGAACGGCCTACGCCTACAACCTGACCCGCGTCCGACAGGAGGAGCGGCGGCGTGTCGAGCAGGCGGAGGTCG
CCTACCGACACCTGACCGAGGGCTGGAGCCGGCGTGGGCGACGCGTACCCACGGGCGCCGCAAAGGAGGAGCGACTATGAAGACGGCGCGGCCGGGCTTG
CGCCTCGAACCCGGCTCTTCGTCACGCGGTCGCCCGTGAGCGGCAACAAAATAGCACGGATCGCAACAAGGGGACTGTTCAACCTCATCCGTCGTCCAAG
GGTGACGCGGCTTGGTGAGGCGATGCTCGATGTCGAGGTCGGCGCAGGCGCCCTCGAAGGAGTGGCACCGAAAGAGAATCTTATCGGCGCGCATCTGCTT
GATCTCGGCCGGCGTCCAAGTCTCGCCGGAGGGATCGGTGAAGTGCGTGCCGTTATCGGTCAGCACGGTGAGGATCTTGTAGGGAACAGCGGCAGCAAGG
GCCCGGAGGAAGTCGCCGGCAACACGGCGGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1137 bp | 378 aa | 144 | 1280 | + | No |
Chemistry : DEDD
ORF sequence :
MTRDHLTAFAKTLTHDDHVVVEATGNASAVAEVIRPHVGRVVIANPRQVRLIAEARIKTDVIDATVLARLYASGFLPEVWIPDEATLALRRQVTRRTQIV
RQRTRLKTMVQSILHAHLVPPCPHADLFGPRGRTWLLAQPLPGDESDAVARHLREYDRLSEDLKVVERELAREARADANVTRLMTIPGIDLVVAVGLIAA
IGPVARFAGPDRLVAYLGLNPSVHQSGSGKPRHGRITKQGRSHAPTMLVEAAWQAARGPGPLRAFFQRVSARRGPHVAAVAVARKLAVIIWHLLTRGEDY
AWVRPALHAKKLRELELRSGEPARRGQRGTAYAYNLTRVRQEERRRVEQAEVAYRHLTEGWSRRGRRVPTGAAKEERL
RQRTRLKTMVQSILHAHLVPPCPHADLFGPRGRTWLLAQPLPGDESDAVARHLREYDRLSEDLKVVERELAREARADANVTRLMTIPGIDLVVAVGLIAA
IGPVARFAGPDRLVAYLGLNPSVHQSGSGKPRHGRITKQGRSHAPTMLVEAAWQAARGPGPLRAFFQRVSARRGPHVAAVAVARKLAVIIWHLLTRGEDY
AWVRPALHAKKLRELELRSGEPARRGQRGTAYAYNLTRVRQEERRRVEQAEVAYRHLTEGWSRRGRRVPTGAAKEERL
Blast result :
Comments
ISMch4 is 65% aa similar to ISAtu7.
References
1] Ming-Chun Lee and David Robinson, direct submission.