ISMav6
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AB447556 | ND | Mycobacterium avium | Mycobacterium avium subsp. hominissuis |
DNA section
IS Length : 1472 bp
Ends
Left end : TTCCTTAGGGGTGAAGGGGTCTGGGATTGGATGTCCTGGATGCCCAGGACGGTGGGGTGTGGCTAATGTGTTGTTGCAACGGTTGTTGCTTGAAAGGAAT
Right end : CTGCTGCGCGACAACAGGACCTGGCAACCCCAGCAACCAACCGCGGCAGCCGCCTGACTCACTCACTAGGCATCCTCACCGCTTGACATGCTCATTGAGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
TTCCTTAGGGGTGAAGGGGTCTGGGATTGGATGTCCTGGATGCCCAGGACGGTGGGGTGTGGCTAATGTGTTGTTGCAACGGTTGTTGCTTGAAAGGAAT
GGCCGCCCTGCCGTTTTGGACGGTCCTGGCCACTGATTGAGATCTGACGCGTACTCGATGACGCTGCTCTAAGGACCTGTTGGCGGGGTTGTCCGCGGGG
ACTGCGACGACAGGAGTAGCGGTATGGCCGTACCCGACCGTGTGTGGGTGGGTATCGACGTCGGTAAGTCGACTCATCATGCGTGCGCGATCGATGACAC
CGGAAACGTGGTGTGGTCGAAGAAAATCCCGAACGAACAGGCCGCGATCGAAGACCTGATCGCCCAGGTTGGCCGGATTGCTAACCATGTGGTCTGGGCG
ATCGATTTGACCTCGCCGCCGGCGGCGCTGCTGATCGCCGTACTGCTGAGCGCGAAAGCCACGGTGGTGTATGTGCCGGGCCGCACGGTTAACACGATGA
GTCATGCGTTCCGAGGTGAAGGCAAGACCGACGCCAAAGACGCCCGGGTGATCGCCGAAACCGCTAGGCACCGAAGAGATCTGTCCCCGGTCGTACCCGG
CGAAGACCTGGTTGCCGAATTGCGGTCGCTGACCGCATACCGGTCGGATCTGATGACGGACTGGGTGCGCGGCGTGAACCGGCTGCGCTCGATGCTCACC
GCCATCTTCCCTGCTCTGGAAGCTGCGTTCGACTACTCCACCCGCGCGCCGTTGATCCTGGTATCCGGTATGTGCACTCCGGGTGAAATCCGGTCGGCGA
AAAGAGCTGGCGTGATCAAGCACCTTCGAAAAAACCGGGCATGGCCCAACAGCATCGAAACGATCGCCGACAAGGCCCTCACCGCGGCGGCCGGCCAGAC
AATCACACTTCCCGGCGAAGCCGGAACCGCCGCGCTCATCAAGCAACTCGCAGCACGGCTGCTGGATCTGGATCGCCAGATCAAGGATATCGATAAGCAA
ATCACCAACAAATTTCGTGAGCATCCCAGCGCCGCCATCATCGAGTCGATGCCCGGCATGGGGCCACACCTGGGCGCTGAGTTCCTCGTGATCACCGGCG
GCAACATGGCCGCCTTCACCAACCCCGGCCGACTGGCATCGTTCGCCGGATTGGTACCGGTCCCACGGGATTCCGGCCGCATCACCGGCAATCTGCATCG
GCCCAAGCGCTACAACCGGCGCCTGCGCCGCGTGTTCTACCTCGCGGCCCTCTCCAGCCTCAAGATCGAAGGCCCCTCGCGCGCCTTCTACGACCGCAAA
CGATCCGAGAACCACATCCACACCCAAGCCCTGCTTGCCCTGGCACGCCGCCACGTCGACGTCCTGTGGGCACTGCTGCGCGACAACAGGACCTGGCAAC
CCCAGCAACCAACCGCGGCAGCCGCCTGACTCACTCACTAGGCATCCTCACCGCTTGACATGCTCATTGAGA
GGCCGCCCTGCCGTTTTGGACGGTCCTGGCCACTGATTGAGATCTGACGCGTACTCGATGACGCTGCTCTAAGGACCTGTTGGCGGGGTTGTCCGCGGGG
ACTGCGACGACAGGAGTAGCGGTATGGCCGTACCCGACCGTGTGTGGGTGGGTATCGACGTCGGTAAGTCGACTCATCATGCGTGCGCGATCGATGACAC
CGGAAACGTGGTGTGGTCGAAGAAAATCCCGAACGAACAGGCCGCGATCGAAGACCTGATCGCCCAGGTTGGCCGGATTGCTAACCATGTGGTCTGGGCG
ATCGATTTGACCTCGCCGCCGGCGGCGCTGCTGATCGCCGTACTGCTGAGCGCGAAAGCCACGGTGGTGTATGTGCCGGGCCGCACGGTTAACACGATGA
GTCATGCGTTCCGAGGTGAAGGCAAGACCGACGCCAAAGACGCCCGGGTGATCGCCGAAACCGCTAGGCACCGAAGAGATCTGTCCCCGGTCGTACCCGG
CGAAGACCTGGTTGCCGAATTGCGGTCGCTGACCGCATACCGGTCGGATCTGATGACGGACTGGGTGCGCGGCGTGAACCGGCTGCGCTCGATGCTCACC
GCCATCTTCCCTGCTCTGGAAGCTGCGTTCGACTACTCCACCCGCGCGCCGTTGATCCTGGTATCCGGTATGTGCACTCCGGGTGAAATCCGGTCGGCGA
AAAGAGCTGGCGTGATCAAGCACCTTCGAAAAAACCGGGCATGGCCCAACAGCATCGAAACGATCGCCGACAAGGCCCTCACCGCGGCGGCCGGCCAGAC
AATCACACTTCCCGGCGAAGCCGGAACCGCCGCGCTCATCAAGCAACTCGCAGCACGGCTGCTGGATCTGGATCGCCAGATCAAGGATATCGATAAGCAA
ATCACCAACAAATTTCGTGAGCATCCCAGCGCCGCCATCATCGAGTCGATGCCCGGCATGGGGCCACACCTGGGCGCTGAGTTCCTCGTGATCACCGGCG
GCAACATGGCCGCCTTCACCAACCCCGGCCGACTGGCATCGTTCGCCGGATTGGTACCGGTCCCACGGGATTCCGGCCGCATCACCGGCAATCTGCATCG
GCCCAAGCGCTACAACCGGCGCCTGCGCCGCGTGTTCTACCTCGCGGCCCTCTCCAGCCTCAAGATCGAAGGCCCCTCGCGCGCCTTCTACGACCGCAAA
CGATCCGAGAACCACATCCACACCCAAGCCCTGCTTGCCCTGGCACGCCGCCACGTCGACGTCCTGTGGGCACTGCTGCGCGACAACAGGACCTGGCAAC
CCCAGCAACCAACCGCGGCAGCCGCCTGACTCACTCACTAGGCATCCTCACCGCTTGACATGCTCATTGAGA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1206 bp | 401 aa | 224 | 1429 | + | No |
Chemistry : DEDD
ORF sequence :
MAVPDRVWVGIDVGKSTHHACAIDDTGNVVWSKKIPNEQAAIEDLIAQVGRIANHVVWAIDLTSPPAALLIAVLLSAKATVVYVPGRTVNTMSHAFRGEG
KTDAKDARVIAETARHRRDLSPVVPGEDLVAELRSLTAYRSDLMTDWVRGVNRLRSMLTAIFPALEAAFDYSTRAPLILVSGMCTPGEIRSAKRAGVIKH
LRKNRAWPNSIETIADKALTAAAGQTITLPGEAGTAALIKQLAARLLDLDRQIKDIDKQITNKFREHPSAAIIESMPGMGPHLGAEFLVITGGNMAAFTN
PGRLASFAGLVPVPRDSGRITGNLHRPKRYNRRLRRVFYLAALSSLKIEGPSRAFYDRKRSENHIHTQALLALARRHVDVLWALLRDNRTWQPQQPTAAA
A
KTDAKDARVIAETARHRRDLSPVVPGEDLVAELRSLTAYRSDLMTDWVRGVNRLRSMLTAIFPALEAAFDYSTRAPLILVSGMCTPGEIRSAKRAGVIKH
LRKNRAWPNSIETIADKALTAAAGQTITLPGEAGTAALIKQLAARLLDLDRQIKDIDKQITNKFREHPSAAIIESMPGMGPHLGAEFLVITGGNMAAFTN
PGRLASFAGLVPVPRDSGRITGNLHRPKRYNRRLRRVFYLAALSSLKIEGPSRAFYDRKRSENHIHTQALLALARRHVDVLWALLRDNRTWQPQQPTAAA
A
Blast result :
Comments
ISMav6 is 94% aa similar to IS901.
References
1] Ichikawa,K., Yagi,T., Moriyama,M., Inagaki,T., Nakagawa,T., Uchiya,K., Nikai,T. and Ogawa,K. (2009)J. Med. Microbiol. In press
2] Ichikawa,K. (2009) Direct submission.
2] Ichikawa,K. (2009) Direct submission.