ISMav8
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008595 | ND | Mycobacterium avium | Mycobacterium avium 104 |
DNA section
IS Length : 2064 bp
Ends
IR Length : 13/18
IRL : CCTGCCACCGCCCCGAGGGCAGTTGGCGCATCCGCCCGAACGCCCGCCGG
IRR : CCTGCCACTGGGCCGCTGTAGCGACTAGCTCGGCGGGCACGACCTGCAAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCAGGTAGCT | CG | CTTAGTTCCC | 2 |
DNA sequence
CCTGCCACCGCCCCGAGGGCAGTTGGCGCATCCGCCCGAACGCCCGCCGGGTTCGCTCGGCCTTAGCCTGAATCCACCGATGAACGGGCTCGTTGACCGG
GTGTCGTAACGAGGAAAGTGCCCTCTGAGCTGGAAAGATTGATGTTCTCTACGCAACAATCAGTCCTGGTCAGAAAGGCACTTCCGGTGAAAGTGTCCCA
TAGGTTCGCTGCGTCGTCGGCGGTCTTCGATGATGCCCATCTCGTGTCGTGCGCCGGGCTGGTGCCGGTGATGACGCTGGCCGCCCAGACCGGGCTGCCA
GAACTGTTGGCCGACAAGATTTCCATCCCTACACCCAAGATCAAGTCCGGCTCTGCCAACCCATCACCGAAGCTGACCACGCTGATCGCCGGCATGTGTG
TCGGCGCTGACAGCATCGATGACCTCGACCTGGTGCGCGCCGGTGGGATGAAGAGTCTCTTCGGTGGTGTGTACGCAGCGTCGACAGTCGGAACCTTGTT
GCGGGAGTTCACCTTCGGACATGCCCGCCAACTGGAGTCAGTCCTACGTCATCATCTGTCGCACCTGTGTCAGCGGGTGGACCTGCTGCCCGGATCCGAC
AAAGGCGCGTTCATCGACATCGACTCCCTGCTACGTCCGGTATATGGTCACGCCAAGCAAGGCGCCTCCTACGGCCACACCAAGATCGCCGGGAAACAGA
TCCTGCGCAAAGGACTGTCCCCGTTGGTGACCACGATCAGCACCACCGGGGCGGCGCCGGCGATCACCGGGATGCGACTACGGGCCGGGAAAGCCAACTC
CGGCAAAGGCGCCGGCAGAATGATCGCCCAAGCCATCGGGACTGCCCGAGCTGCTGGCGTGCGCGGGCAGATCCTGGTGCGCGGTGATTCGGCCTACGGC
ACCCGCGCCGTGGTGGGTGCCTGCCGAAGCCACGGCGCCCGATTCTCGTTGGTCATGACCCGCAACACCGCCATCGACCGGGCGATCAACTCGATCGACG
AGTCCGCTTGGACGCCGGTGCGTTATCCCGGCGCGGTGCGTGATCCCGACACCGGGGACTGGATCTCCGACGCCGAAGTCGCCGAGATCGGCTACACCGC
GTTTGCGTCCACCAAGGACCGGTTCACCGCCCGCCTGGTGGTACGTCGGGTCAAAGACGCCCGTTTCCGCGACGCGCTGTTCCCGGTGTGGCGATATCAC
CCGTTCTTCACCAACACCGACTTGCCCACCGCCGAGGCGGACATCACTCACCGCCAGCACGCGATCATCGAAACCGTCTTCGCTGACCTGATCGACGGAC
CACTGGCCCACATGCCCTCCGGGCAGTTCGGGGCGAACTCCGCGTGGGTGTTGTGCGCAGCCATCGCCCACAATCTTCTCCGTGCCGCCGGCGTCCTGGC
CGGAGGTGCCCACGCGGTCGCTCGTGGAGCCACCCTGCGCCGCAAAATCGTCAACATCCCAGCCCGGCTGGCCTGCCCTCAACGCCGACCCATCTTGCAC
CTACCAACGCATTGGCCCTGGGCCGATCACTGGATCACGTTGTGGTGCAACACCATCGGCCACAGTCCACCAACAACCGCGACTATCTGACCACCTCGCC
GAATAGGCCCAACCGGAGCACACAGGAAAAGCTGGACAGACCAGCGACCACCTCCTGCGAACACGCCGCCCCGCCCACGGAAATCACCGTCGAACCACAT
CAACCAGGTCAGTCCACGGATCGAGGCTTAGCCGCCGCCGTCTGTCGTGCCATGCGCCTGCTCCGTTCCGTGCAACCTCCGTGCAATAGTCACCCTATCG
GAACCCGACAGAACCTCACGGATGGAAACACCGTTTGACAGGGGTAAATGCTGATGGCGGGGTGTTTCCGGTGGTCACCGGCACTATCGCACGGGCCGGT
TCGGCTAATTCGAATCCTGCCGGGGGCACCACGGCCGGGGGCATTGCATGTCGGCTGGTCAATAGCGATCGATCAGTGCGCCGCCTAAAATCATGCGGTT
ATGGGGCAAGATTCATTGCAGGTCGTGCCCGCCGAGCTAGTCGCTACAGCGGCCCAGTGGCAGG
GTGTCGTAACGAGGAAAGTGCCCTCTGAGCTGGAAAGATTGATGTTCTCTACGCAACAATCAGTCCTGGTCAGAAAGGCACTTCCGGTGAAAGTGTCCCA
TAGGTTCGCTGCGTCGTCGGCGGTCTTCGATGATGCCCATCTCGTGTCGTGCGCCGGGCTGGTGCCGGTGATGACGCTGGCCGCCCAGACCGGGCTGCCA
GAACTGTTGGCCGACAAGATTTCCATCCCTACACCCAAGATCAAGTCCGGCTCTGCCAACCCATCACCGAAGCTGACCACGCTGATCGCCGGCATGTGTG
TCGGCGCTGACAGCATCGATGACCTCGACCTGGTGCGCGCCGGTGGGATGAAGAGTCTCTTCGGTGGTGTGTACGCAGCGTCGACAGTCGGAACCTTGTT
GCGGGAGTTCACCTTCGGACATGCCCGCCAACTGGAGTCAGTCCTACGTCATCATCTGTCGCACCTGTGTCAGCGGGTGGACCTGCTGCCCGGATCCGAC
AAAGGCGCGTTCATCGACATCGACTCCCTGCTACGTCCGGTATATGGTCACGCCAAGCAAGGCGCCTCCTACGGCCACACCAAGATCGCCGGGAAACAGA
TCCTGCGCAAAGGACTGTCCCCGTTGGTGACCACGATCAGCACCACCGGGGCGGCGCCGGCGATCACCGGGATGCGACTACGGGCCGGGAAAGCCAACTC
CGGCAAAGGCGCCGGCAGAATGATCGCCCAAGCCATCGGGACTGCCCGAGCTGCTGGCGTGCGCGGGCAGATCCTGGTGCGCGGTGATTCGGCCTACGGC
ACCCGCGCCGTGGTGGGTGCCTGCCGAAGCCACGGCGCCCGATTCTCGTTGGTCATGACCCGCAACACCGCCATCGACCGGGCGATCAACTCGATCGACG
AGTCCGCTTGGACGCCGGTGCGTTATCCCGGCGCGGTGCGTGATCCCGACACCGGGGACTGGATCTCCGACGCCGAAGTCGCCGAGATCGGCTACACCGC
GTTTGCGTCCACCAAGGACCGGTTCACCGCCCGCCTGGTGGTACGTCGGGTCAAAGACGCCCGTTTCCGCGACGCGCTGTTCCCGGTGTGGCGATATCAC
CCGTTCTTCACCAACACCGACTTGCCCACCGCCGAGGCGGACATCACTCACCGCCAGCACGCGATCATCGAAACCGTCTTCGCTGACCTGATCGACGGAC
CACTGGCCCACATGCCCTCCGGGCAGTTCGGGGCGAACTCCGCGTGGGTGTTGTGCGCAGCCATCGCCCACAATCTTCTCCGTGCCGCCGGCGTCCTGGC
CGGAGGTGCCCACGCGGTCGCTCGTGGAGCCACCCTGCGCCGCAAAATCGTCAACATCCCAGCCCGGCTGGCCTGCCCTCAACGCCGACCCATCTTGCAC
CTACCAACGCATTGGCCCTGGGCCGATCACTGGATCACGTTGTGGTGCAACACCATCGGCCACAGTCCACCAACAACCGCGACTATCTGACCACCTCGCC
GAATAGGCCCAACCGGAGCACACAGGAAAAGCTGGACAGACCAGCGACCACCTCCTGCGAACACGCCGCCCCGCCCACGGAAATCACCGTCGAACCACAT
CAACCAGGTCAGTCCACGGATCGAGGCTTAGCCGCCGCCGTCTGTCGTGCCATGCGCCTGCTCCGTTCCGTGCAACCTCCGTGCAATAGTCACCCTATCG
GAACCCGACAGAACCTCACGGATGGAAACACCGTTTGACAGGGGTAAATGCTGATGGCGGGGTGTTTCCGGTGGTCACCGGCACTATCGCACGGGCCGGT
TCGGCTAATTCGAATCCTGCCGGGGGCACCACGGCCGGGGGCATTGCATGTCGGCTGGTCAATAGCGATCGATCAGTGCGCCGCCTAAAATCATGCGGTT
ATGGGGCAAGATTCATTGCAGGTCGTGCCCGCCGAGCTAGTCGCTACAGCGGCCCAGTGGCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1404 bp | 467 aa | 187 | 1590 | + | No |
Chemistry : DDE
ORF sequence :
VKVSHRFAASSAVFDDAHLVSCAGLVPVMTLAAQTGLPELLADKISIPTPKIKSGSANPSPKLTTLIAGMCVGADSIDDLDLVRAGGMKSLFGGVYAAST
VGTLLREFTFGHARQLESVLRHHLSHLCQRVDLLPGSDKGAFIDIDSLLRPVYGHAKQGASYGHTKIAGKQILRKGLSPLVTTISTTGAAPAITGMRLRA
GKANSGKGAGRMIAQAIGTARAAGVRGQILVRGDSAYGTRAVVGACRSHGARFSLVMTRNTAIDRAINSIDESAWTPVRYPGAVRDPDTGDWISDAEVAE
IGYTAFASTKDRFTARLVVRRVKDARFRDALFPVWRYHPFFTNTDLPTAEADITHRQHAIIETVFADLIDGPLAHMPSGQFGANSAWVLCAAIAHNLLRA
AGVLAGGAHAVARGATLRRKIVNIPARLACPQRRPILHLPTHWPWADHWITLWCNTIGHSPPTTATI
VGTLLREFTFGHARQLESVLRHHLSHLCQRVDLLPGSDKGAFIDIDSLLRPVYGHAKQGASYGHTKIAGKQILRKGLSPLVTTISTTGAAPAITGMRLRA
GKANSGKGAGRMIAQAIGTARAAGVRGQILVRGDSAYGTRAVVGACRSHGARFSLVMTRNTAIDRAINSIDESAWTPVRYPGAVRDPDTGDWISDAEVAE
IGYTAFASTKDRFTARLVVRRVKDARFRDALFPVWRYHPFFTNTDLPTAEADITHRQHAIIETVFADLIDGPLAHMPSGQFGANSAWVLCAAIAHNLLRA
AGVLAGGAHAVARGATLRRKIVNIPARLACPQRRPILHLPTHWPWADHWITLWCNTIGHSPPTTATI
Blast result :
Comments
ISMav8 is 94% aa similar to ISMsm11. The transposase was reconstructed in silico by deletion of the insertion sequence IS1601.
References
1] ISfinder annotation (2009)
2] Fleischmann,R.D., Dodson,R.J., Haft,D.H., Merkel,J.S., Nelson,W.C. and Fraser,C.M. (2006) Direct submission GenBanK.
2] Fleischmann,R.D., Dodson,R.J., Haft,D.H., Merkel,J.S., Nelson,W.C. and Fraser,C.M. (2006) Direct submission GenBanK.