ISMav7
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008595 | ND | Mycobacterium avium | Mycobacterium avium 104 |
DNA section
IS Length : 1691 bp
Ends
IR Length : 9/12
IRL : CCCAGATTTTTCGCGAAATGTTGTGAGTTTCGGGGTGTAGATACGCGAAA
IRR : CCTCGATTTTGCATTGAGTTGGTGCGGAGTCGGTTCTGCCTGTGGATTGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGGCCCGCAG | CTAG | CGTGCTGTGA | 4 |
DNA sequence
CCCAGATTTTTCGCGAAATGTTGTGAGTTTCGGGGTGTAGATACGCGAAAGTGCCTGTCCTGCAAGGGATAATCGGACTTATCTAAGGTTCAGATCGTTC
CAGCTGGAAGGCACTTCGCACGTGAAGAATATCGCGGCCGGGTCGCGGGTGAAAGTGTCGGCCGATGGTCATGGTGTCGTGTCGCATGCCGGGATGGGTA
TGCTGCGCGAACTGGCCGACCGCACGGGACTGTCAGCGCAGGTCAGCGCCGCGTTGGCCGACACCTACCGCGGCCCGTGGGTGTACGCACCCGGCGATGT
CTTCGCTGATCTGGCCGCCGCGGTCGCCGACGGGGCCGATTGCATCGATGGGGTCGGCCAGTTGTGCGGGGACCGTGAGCACGTGTTCGGCGCGAAGGCC
TCGACCACCACGATGTGGCGGTTGATCGACAAGCGGATCGATGCCGCGCGCCTGCCCGGGGTGCGGGCAGCACGAGCCGGCGCGCGGGCCGCAGCATGGG
CGGCCGGAGCCACCCCCACTGGTGATGGCTGGCTGCACATCGACATCGATGCCACCCTGGTCATCGATCACTCCGACAACAAGACCGGCGCCACACCGAC
CTGGAAGAAGACTTTCGGTCTTCATCCGCTGCTGGCGTTTTTGGACCGTCCTGAGATCTCCGGCGGGGAAGCCCTGGCCGGGCTGCTGCGCACCGGCAAC
GCCGGCTCCAACACCGCCTCCGATCACATCATCGTCCTCAAACAAGCGCTGGCGTCGCTGCCGCCGCGATGGCGGCCCCACCCAGGTGCTCGGGCGGATC
CGGACGCGTCTGGGGTGTTGGTGCGCTGCGACACTGCCGGAGCCACCCACAAGTTCGCCGACGCCTGCCGCGCCGCCGGGGTCGGGTTCTCCTTCGGCTA
CCCCGTCGATGTGCGCGTCCAGGACGCGGTGGACACCCTCAACCTCGCCGATGGCTGGTATCCAGCGATCGACACCGACGGCGGGATCCGCGAGGGGGCC
TGGGTCGCCGAGGCCACCGACCTGGTCAACCTCAGTAGCTGGCCGGCCGGCACCCGGCTGATCCTGCGCAAAGAACGCCCGCATCCCGGTGCGCAGTTGC
GGTTCACCGACGCCGACGGGATGCGGGTCACCGCGTTCATCACCGACACCGAACCCGGTGTCATTGCTGGTCAGGTCGCCGGTCTGGAATTGCGGCACCG
CCAGCACGCCCGCGTCGAGGACCGCATCCGCGAACTCAAAGCCACCGGCCTGCGTAACCTGCCGTGCCACTCGTTCTGGGCCAACGCCGCCTGGCTGGAA
ATCGTGCTGGCCGCCGCCGATCTGGTCACCTGGGCCCGACTGATCGGCTTCCGCGCACATCCCGGCCTGGCTCGCGCCGAGATCGCCACCTTCCGCTACC
GGGTCCTGCACGTCGCTGCCCGTATCACTCGCGGCGCCCGCCAACAACGACTACGTATCGATGCCACCTGGCGCTGGGCATCAGCGATCGCGACCGCCTG
GCAACACCTACGCACCGCCTTCGGATAGAACCCGGCTCACCTGACCCACCGATCAGAAAGACCAGGCCCTGGGAAAGCCCGCCCACCCGGCGACACGGGA
CGCCCCACCACGCCATCACACGAAAACACCTACCCGGCAACACAATCCACAGGCAGAACCGACTCCGCACCAACTCAATGCAAAATCGAGG
CAGCTGGAAGGCACTTCGCACGTGAAGAATATCGCGGCCGGGTCGCGGGTGAAAGTGTCGGCCGATGGTCATGGTGTCGTGTCGCATGCCGGGATGGGTA
TGCTGCGCGAACTGGCCGACCGCACGGGACTGTCAGCGCAGGTCAGCGCCGCGTTGGCCGACACCTACCGCGGCCCGTGGGTGTACGCACCCGGCGATGT
CTTCGCTGATCTGGCCGCCGCGGTCGCCGACGGGGCCGATTGCATCGATGGGGTCGGCCAGTTGTGCGGGGACCGTGAGCACGTGTTCGGCGCGAAGGCC
TCGACCACCACGATGTGGCGGTTGATCGACAAGCGGATCGATGCCGCGCGCCTGCCCGGGGTGCGGGCAGCACGAGCCGGCGCGCGGGCCGCAGCATGGG
CGGCCGGAGCCACCCCCACTGGTGATGGCTGGCTGCACATCGACATCGATGCCACCCTGGTCATCGATCACTCCGACAACAAGACCGGCGCCACACCGAC
CTGGAAGAAGACTTTCGGTCTTCATCCGCTGCTGGCGTTTTTGGACCGTCCTGAGATCTCCGGCGGGGAAGCCCTGGCCGGGCTGCTGCGCACCGGCAAC
GCCGGCTCCAACACCGCCTCCGATCACATCATCGTCCTCAAACAAGCGCTGGCGTCGCTGCCGCCGCGATGGCGGCCCCACCCAGGTGCTCGGGCGGATC
CGGACGCGTCTGGGGTGTTGGTGCGCTGCGACACTGCCGGAGCCACCCACAAGTTCGCCGACGCCTGCCGCGCCGCCGGGGTCGGGTTCTCCTTCGGCTA
CCCCGTCGATGTGCGCGTCCAGGACGCGGTGGACACCCTCAACCTCGCCGATGGCTGGTATCCAGCGATCGACACCGACGGCGGGATCCGCGAGGGGGCC
TGGGTCGCCGAGGCCACCGACCTGGTCAACCTCAGTAGCTGGCCGGCCGGCACCCGGCTGATCCTGCGCAAAGAACGCCCGCATCCCGGTGCGCAGTTGC
GGTTCACCGACGCCGACGGGATGCGGGTCACCGCGTTCATCACCGACACCGAACCCGGTGTCATTGCTGGTCAGGTCGCCGGTCTGGAATTGCGGCACCG
CCAGCACGCCCGCGTCGAGGACCGCATCCGCGAACTCAAAGCCACCGGCCTGCGTAACCTGCCGTGCCACTCGTTCTGGGCCAACGCCGCCTGGCTGGAA
ATCGTGCTGGCCGCCGCCGATCTGGTCACCTGGGCCCGACTGATCGGCTTCCGCGCACATCCCGGCCTGGCTCGCGCCGAGATCGCCACCTTCCGCTACC
GGGTCCTGCACGTCGCTGCCCGTATCACTCGCGGCGCCCGCCAACAACGACTACGTATCGATGCCACCTGGCGCTGGGCATCAGCGATCGCGACCGCCTG
GCAACACCTACGCACCGCCTTCGGATAGAACCCGGCTCACCTGACCCACCGATCAGAAAGACCAGGCCCTGGGAAAGCCCGCCCACCCGGCGACACGGGA
CGCCCCACCACGCCATCACACGAAAACACCTACCCGGCAACACAATCCACAGGCAGAACCGACTCCGCACCAACTCAATGCAAAATCGAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1407 bp | 468 aa | 122 | 1528 | + | No |
Chemistry : DDE
ORF sequence :
MKNIAAGSRVKVSADGHGVVSHAGMGMLRELADRTGLSAQVSAALADTYRGPWVYAPGDVFADLAAAVADGADCIDGVGQLCGDREHVFGAKASTTTMWR
LIDKRIDAARLPGVRAARAGARAAAWAAGATPTGDGWLHIDIDATLVIDHSDNKTGATPTWKKTFGLHPLLAFLDRPEISGGEALAGLLRTGNAGSNTAS
DHIIVLKQALASLPPRWRPHPGARADPDASGVLVRCDTAGATHKFADACRAAGVGFSFGYPVDVRVQDAVDTLNLADGWYPAIDTDGGIREGAWVAEATD
LVNLSSWPAGTRLILRKERPHPGAQLRFTDADGMRVTAFITDTEPGVIAGQVAGLELRHRQHARVEDRIRELKATGLRNLPCHSFWANAAWLEIVLAAAD
LVTWARLIGFRAHPGLARAEIATFRYRVLHVAARITRGARQQRLRIDATWRWASAIATAWQHLRTAFG
LIDKRIDAARLPGVRAARAGARAAAWAAGATPTGDGWLHIDIDATLVIDHSDNKTGATPTWKKTFGLHPLLAFLDRPEISGGEALAGLLRTGNAGSNTAS
DHIIVLKQALASLPPRWRPHPGARADPDASGVLVRCDTAGATHKFADACRAAGVGFSFGYPVDVRVQDAVDTLNLADGWYPAIDTDGGIREGAWVAEATD
LVNLSSWPAGTRLILRKERPHPGAQLRFTDADGMRVTAFITDTEPGVIAGQVAGLELRHRQHARVEDRIRELKATGLRNLPCHSFWANAAWLEIVLAAAD
LVTWARLIGFRAHPGLARAEIATFRYRVLHVAARITRGARQQRLRIDATWRWASAIATAWQHLRTAFG
Blast result :
Comments
ISMav7 is 91% aa similar to ISMsm3.
References
1] ISfinder annotation (2009)
2] Fleischmann,R.D., Dodson,R.J., Haft,D.H., Merkel,J.S., Nelson,W.C. and Fraser,C.M. (2006) Direct submission GenBank.
2] Fleischmann,R.D., Dodson,R.J., Haft,D.H., Merkel,J.S., Nelson,W.C. and Fraser,C.M. (2006) Direct submission GenBank.