ISMsm10
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008596 | ND | Mycobacterium smegmatis | Mycobacterium smegmatis MC2 155 |
DNA section
IS Length : 1661 bp
Ends
IR Length : 14/18
IRL : CCTCGATCCACCGATGGAAAGCCTGGATAGGCGGGTGTCGATATAAGGAA
IRR : CCTCGATCCGTGGATCGACCCTGTTGAGGTTGTTTGGGGCTGATTTTTGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGTCGAGAGG | TTTAG | GCCGGTCAGC | 5 |
DNA sequence
CCTCGATCCACCGATGGAAAGCCTGGATAGGCGGGTGTCGATATAAGGAAAGTGCCTTCTGAGCTGCGATGATGAGTGTTCCTTACGCACTTATCGGCAC
AACTTCGAAAGGCACTTCCGGTGAAAGTGTCGCACAACTTCATGGCTGCGTCTGCAGTGTTCGATGATGAGCATCTGGTGTCGTGCGCCGGCCTGGTGCC
GGTGATGACCCTGGCCAGCCAGACCGGGCTATCGGACCTGATCGCGGACAAGGTCGAAATCGTTGAACCGCGGATCAAGTCCGGCTCGGCCAATCCGTCA
CCGAAGCTGACGACAGTAATCGCCGGAATGTGCGCCGGCGCCGACAGCATCGACGACCTCGACCTCGTGCGCTCCGGTGGAATGAAAGCCCTCTTTGGCG
GCGTGTACGCGCCCTCGACCATCGGAACACTGTTGCGGGAGTTCACCTTCGGACACGCCCGACAACTGGAAGCAGTGCTGCGTGAGCATCTGGGCGGGCT
CTGCGAGCGCGTCGCGTTGCTACCCGGCGCCGATACCCAAGCGTTCGTCGACATCGATTCACTGCTGCGCCCGGTCTACGGCCACGCCAAACAAGGAGCC
TCCTACGGACACACCAAGATCGCCGGCAAGCAGATCCTGCGCAAAGGCCTCTCGCCGCTGATCACCACCATCAGCACCACCACGGGTGCCCCGATGATCA
CCGGAGCCCGGCTGCGGGCGGGCAAGACCAACTCCGGCAAGGGCGCAGCCCGGATGATCGCCCAAGCAGTCACCACCGCCCGCGCCGCCGGTGTCAACGG
GCAGATCCTGGTGCGCGGAGACTCGGCCTACGGCAACAGCACCGTGGTGAATGCCTGCCGACGCGCCGGTGCCCACTTCTCGCTGGTGCTGACCAAGACC
CGCGCCGTCGCTGCGGCCATCGAGGCCATCAGCGATAACGCCTGGACCCCGGTCAACTACCCCGGCGCAGTGCGCGACCCCGACACCGGCGCCTGGATCT
CCGATGCCGAAGTCGCCGAAACCACCTACACCGCTTTCAGTTCCACCAACACCCCGGTCACCGCTCGGTTGATCGTGCGTCGGGTCAAAGACGCCCGATA
CCTCGATGCGCTGTTTCCGGTGTGGCGGTATCACCCCTTCTTCACCGATTCCGACGAACCCGTCGACGCCGCTGACATCACCCACCGCCGCCACGCCATC
ATCGAAACCGTGTTCGCCGACCTGATCGACGGACCGTTGGCGCATATGCCCTCCGGGCGGTTCGGCGCGAACTCGGCCTGGATCCTGTGCGCGGCGATCG
CCCACAACCTGCTACGCGCCGCCGGGGTGCTCGCCGGCGGTGCCCATGCCCTCGCGCGCGGAGCCACACTGCGCCGCAAGATCGTCAACATCCCGGCCCG
ACTGGCCCGACCCCAACGCCGACCCATCCTGCATCTACCCTCGCATTGGCCGTGGGCCCAGCAGTGGCTCACATTGTGGCGCAACACAATCGGCTACAGC
CCGCCAACTGCTGCGACCCACTGACCACCGGACCCACAGGCCCCGACCCGAACATCACAGGAAAAGCTGGGCAGACCAGCGGCTACAGGCTGCCCACGAC
CTGGGCGCACGACAAAAATCAGCCCCAAACAACCTCAACAGGGTCGATCCACGGATCGAGG
AACTTCGAAAGGCACTTCCGGTGAAAGTGTCGCACAACTTCATGGCTGCGTCTGCAGTGTTCGATGATGAGCATCTGGTGTCGTGCGCCGGCCTGGTGCC
GGTGATGACCCTGGCCAGCCAGACCGGGCTATCGGACCTGATCGCGGACAAGGTCGAAATCGTTGAACCGCGGATCAAGTCCGGCTCGGCCAATCCGTCA
CCGAAGCTGACGACAGTAATCGCCGGAATGTGCGCCGGCGCCGACAGCATCGACGACCTCGACCTCGTGCGCTCCGGTGGAATGAAAGCCCTCTTTGGCG
GCGTGTACGCGCCCTCGACCATCGGAACACTGTTGCGGGAGTTCACCTTCGGACACGCCCGACAACTGGAAGCAGTGCTGCGTGAGCATCTGGGCGGGCT
CTGCGAGCGCGTCGCGTTGCTACCCGGCGCCGATACCCAAGCGTTCGTCGACATCGATTCACTGCTGCGCCCGGTCTACGGCCACGCCAAACAAGGAGCC
TCCTACGGACACACCAAGATCGCCGGCAAGCAGATCCTGCGCAAAGGCCTCTCGCCGCTGATCACCACCATCAGCACCACCACGGGTGCCCCGATGATCA
CCGGAGCCCGGCTGCGGGCGGGCAAGACCAACTCCGGCAAGGGCGCAGCCCGGATGATCGCCCAAGCAGTCACCACCGCCCGCGCCGCCGGTGTCAACGG
GCAGATCCTGGTGCGCGGAGACTCGGCCTACGGCAACAGCACCGTGGTGAATGCCTGCCGACGCGCCGGTGCCCACTTCTCGCTGGTGCTGACCAAGACC
CGCGCCGTCGCTGCGGCCATCGAGGCCATCAGCGATAACGCCTGGACCCCGGTCAACTACCCCGGCGCAGTGCGCGACCCCGACACCGGCGCCTGGATCT
CCGATGCCGAAGTCGCCGAAACCACCTACACCGCTTTCAGTTCCACCAACACCCCGGTCACCGCTCGGTTGATCGTGCGTCGGGTCAAAGACGCCCGATA
CCTCGATGCGCTGTTTCCGGTGTGGCGGTATCACCCCTTCTTCACCGATTCCGACGAACCCGTCGACGCCGCTGACATCACCCACCGCCGCCACGCCATC
ATCGAAACCGTGTTCGCCGACCTGATCGACGGACCGTTGGCGCATATGCCCTCCGGGCGGTTCGGCGCGAACTCGGCCTGGATCCTGTGCGCGGCGATCG
CCCACAACCTGCTACGCGCCGCCGGGGTGCTCGCCGGCGGTGCCCATGCCCTCGCGCGCGGAGCCACACTGCGCCGCAAGATCGTCAACATCCCGGCCCG
ACTGGCCCGACCCCAACGCCGACCCATCCTGCATCTACCCTCGCATTGGCCGTGGGCCCAGCAGTGGCTCACATTGTGGCGCAACACAATCGGCTACAGC
CCGCCAACTGCTGCGACCCACTGACCACCGGACCCACAGGCCCCGACCCGAACATCACAGGAAAAGCTGGGCAGACCAGCGGCTACAGGCTGCCCACGAC
CTGGGCGCACGACAAAAATCAGCCCCAAACAACCTCAACAGGGTCGATCCACGGATCGAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1404 bp | 467 aa | 121 | 1524 | + | No |
Chemistry : DDE
ORF sequence :
MKVSHNFMAASAVFDDEHLVSCAGLVPVMTLASQTGLSDLIADKVEIVEPRIKSGSANPSPKLTTVIAGMCAGADSIDDLDLVRSGGMKALFGGVYAPST
IGTLLREFTFGHARQLEAVLREHLGGLCERVALLPGADTQAFVDIDSLLRPVYGHAKQGASYGHTKIAGKQILRKGLSPLITTISTTTGAPMITGARLRA
GKTNSGKGAARMIAQAVTTARAAGVNGQILVRGDSAYGNSTVVNACRRAGAHFSLVLTKTRAVAAAIEAISDNAWTPVNYPGAVRDPDTGAWISDAEVAE
TTYTAFSSTNTPVTARLIVRRVKDARYLDALFPVWRYHPFFTDSDEPVDAADITHRRHAIIETVFADLIDGPLAHMPSGRFGANSAWILCAAIAHNLLRA
AGVLAGGAHALARGATLRRKIVNIPARLARPQRRPILHLPSHWPWAQQWLTLWRNTIGYSPPTAATH
IGTLLREFTFGHARQLEAVLREHLGGLCERVALLPGADTQAFVDIDSLLRPVYGHAKQGASYGHTKIAGKQILRKGLSPLITTISTTTGAPMITGARLRA
GKTNSGKGAARMIAQAVTTARAAGVNGQILVRGDSAYGNSTVVNACRRAGAHFSLVLTKTRAVAAAIEAISDNAWTPVNYPGAVRDPDTGAWISDAEVAE
TTYTAFSSTNTPVTARLIVRRVKDARYLDALFPVWRYHPFFTDSDEPVDAADITHRRHAIIETVFADLIDGPLAHMPSGRFGANSAWILCAAIAHNLLRA
AGVLAGGAHALARGATLRRKIVNIPARLARPQRRPILHLPSHWPWAQQWLTLWRNTIGYSPPTAATH
Blast result :
Comments
ISMsm10 is 60% aa similar to ISBli4.
References
1] ISfinder annotation (2009)
2] Fleischmann,R.D., Dodson,R.J., Haft,D.H., Merkel,J.S., Nelson,W.C. and Fraser,C.M. (2006) Direct submission GenBank.
2] Fleischmann,R.D., Dodson,R.J., Haft,D.H., Merkel,J.S., Nelson,W.C. and Fraser,C.M. (2006) Direct submission GenBank.