ISMgi1
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_009338 | ND | Mycobacterium gilvum | Mycobacterium gilvum PYR-GCK |
DNA section
IS Length : 1614 bp
Ends
IR Length : 12/15
IRL : CCTCGACGTTTCATGAATTGGTCGGTGACGCGGGCCTGTAATGCACGGAA
IRR : CCTCGATCTTTCGTGTGGCCGGTGGTTGATGTGTGTTCTGGGTGTGGCAA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GGTGGAGCCGGGCG | G/CACTAG | AGCTTGCTGATCGG | 8 |
| TCTGCAACACCAGTTG | TTAA | CGGGCATGGCTCACTC | 4 |
| AGGCGTCACGCATCAT | CTAG | GTGCTGACCGCTCGCC | 4 |
DNA sequence
CCTCGACGTTTCATGAATTGGTCGGTGACGCGGGCCTGTAATGCACGGAAGTGCCTGTCCTAGTTGAGAACATTGACTTGCTAAGGGTCAAGGTTCGCCA
AGAGGAAAGGCACTCCGTAGATGAAGCGTAGCGCGGTGTGTTCGGTAGTGGTGGATTCGGGTCGCGAGTCGCTGGTGTCGTCGGCCGGCGGGCTGTTGTT
GGCCCGGACTCTGCACTGCTCCGGACTTGAAAAGGCCATGTCAGCGGCATTAGCGCCGTGGCGAGCACCGCGTGCGGTCCACGACCCGGCCAAGGTCTTG
ACTGATATGGCGATCGCAGTCGCTCTCGGCGGTGACTGCGCCGCTGATGTCGCGGTGGTCCGGGCCCAGCCCGAGCTGTTCGGGCAGGTCGCCTCCGATG
CCACCGTGTCCCGACTGATCGCCGCACTCGCCGACGATGTCGATGCTGCTCTCACGGCGATCCGCACCGCGCGGGCACTTGCTCGTCAGCGTGTCTGGCG
TCGTCAACGACCGTTGCCCGGCGCGGGCAACCAGGTGATCATCGACCTGGATGCCACCCTGGTGACCGCCCACAGCGACAAAGAAGGTGCAACACCAACC
TTCAAGTACGGGTACGGGTTTCACCCCATGCTGGCGTTCGTCGACCACGGCAGCCACGGATCCGGCGAAGCGTTGGCAGGCCTGCTGCGACCCGGCTCAG
CCGGGTCCAACAGTGCAGCCGACCACATCAGCGTCCTGGACGCCGCCCTGGCGCAGCTTCCCGACCATGAGCGTGCCCAGGTCCTGGTACGGACTGACAC
CGGCGGTGGGGTCAAAGACTTCCTGCACCACATCACCGACCTGAAACTGCAGTACAGCGTCGGGTTCTACGGCATGCCCCCGATCGTCGAAGCCCTCAAT
CGGGTGCCGCCCCAGGCGTGGCGGGCTGCCCTCGACGGCGATGGCGCACCGCGCGAGGGTGCCCAGGTCGCCGAGCTGACCCGCTACCTGCCCGACACAC
TGCGCGGCTGGCCGGCAGGGATGCGGGTCATCGCTCGCCGTGAACGGCCCCATCCCGGCGCCCAGCTGCGCCTGACCGACGACAACGGGTGGCGGATCAC
CTGTTTTGCGACCAACACCCCAGGCTGGTCGATCGCCGATCTGGAAGTTCGGCACCGTCAACGTGCTCGTGCCGAGGACCGTATCCGCAACCTCAAAGAC
ACCGGCCTGACCAACCTGCCGTTTCACGGCTTCGACCAGAATCAGCTCTGGCTCGAAATCACCCTGCTGGCCGCTGACCTGCTGGTCTGGACCCAAGTCC
TGGCGTTCACCGCACACCCGGCCCGACGTTGGGAACCCAAACGGCTACGCCTACGACTGCTGGCCGTGGCCGGACGGATCATCCACACAGGACGGCGTCG
ACTCCTGCGTCTGCCCCGCGGCTGGCCATGGAGCGACCTCATCGAAACCGGCTGGACTGCACTGCAAACCGCCTAGCAACACTCACCAAACCGACGACCA
AGGACCCAGGAGCACCGGCGACACGCAACGCCGGAACTCCACGCCGCCCGTCATCGCAACCGACTTGCCACACCCAGAACACACATCAACCACCGGCCAC
ACGAAAGATCGAGG
AGAGGAAAGGCACTCCGTAGATGAAGCGTAGCGCGGTGTGTTCGGTAGTGGTGGATTCGGGTCGCGAGTCGCTGGTGTCGTCGGCCGGCGGGCTGTTGTT
GGCCCGGACTCTGCACTGCTCCGGACTTGAAAAGGCCATGTCAGCGGCATTAGCGCCGTGGCGAGCACCGCGTGCGGTCCACGACCCGGCCAAGGTCTTG
ACTGATATGGCGATCGCAGTCGCTCTCGGCGGTGACTGCGCCGCTGATGTCGCGGTGGTCCGGGCCCAGCCCGAGCTGTTCGGGCAGGTCGCCTCCGATG
CCACCGTGTCCCGACTGATCGCCGCACTCGCCGACGATGTCGATGCTGCTCTCACGGCGATCCGCACCGCGCGGGCACTTGCTCGTCAGCGTGTCTGGCG
TCGTCAACGACCGTTGCCCGGCGCGGGCAACCAGGTGATCATCGACCTGGATGCCACCCTGGTGACCGCCCACAGCGACAAAGAAGGTGCAACACCAACC
TTCAAGTACGGGTACGGGTTTCACCCCATGCTGGCGTTCGTCGACCACGGCAGCCACGGATCCGGCGAAGCGTTGGCAGGCCTGCTGCGACCCGGCTCAG
CCGGGTCCAACAGTGCAGCCGACCACATCAGCGTCCTGGACGCCGCCCTGGCGCAGCTTCCCGACCATGAGCGTGCCCAGGTCCTGGTACGGACTGACAC
CGGCGGTGGGGTCAAAGACTTCCTGCACCACATCACCGACCTGAAACTGCAGTACAGCGTCGGGTTCTACGGCATGCCCCCGATCGTCGAAGCCCTCAAT
CGGGTGCCGCCCCAGGCGTGGCGGGCTGCCCTCGACGGCGATGGCGCACCGCGCGAGGGTGCCCAGGTCGCCGAGCTGACCCGCTACCTGCCCGACACAC
TGCGCGGCTGGCCGGCAGGGATGCGGGTCATCGCTCGCCGTGAACGGCCCCATCCCGGCGCCCAGCTGCGCCTGACCGACGACAACGGGTGGCGGATCAC
CTGTTTTGCGACCAACACCCCAGGCTGGTCGATCGCCGATCTGGAAGTTCGGCACCGTCAACGTGCTCGTGCCGAGGACCGTATCCGCAACCTCAAAGAC
ACCGGCCTGACCAACCTGCCGTTTCACGGCTTCGACCAGAATCAGCTCTGGCTCGAAATCACCCTGCTGGCCGCTGACCTGCTGGTCTGGACCCAAGTCC
TGGCGTTCACCGCACACCCGGCCCGACGTTGGGAACCCAAACGGCTACGCCTACGACTGCTGGCCGTGGCCGGACGGATCATCCACACAGGACGGCGTCG
ACTCCTGCGTCTGCCCCGCGGCTGGCCATGGAGCGACCTCATCGAAACCGGCTGGACTGCACTGCAAACCGCCTAGCAACACTCACCAAACCGACGACCA
AGGACCCAGGAGCACCGGCGACACGCAACGCCGGAACTCCACGCCGCCCGTCATCGCAACCGACTTGCCACACCCAGAACACACATCAACCACCGGCCAC
ACGAAAGATCGAGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1302 bp | 433 aa | 175 | 1476 | + | No |
Chemistry : DDE
ORF sequence :
MSSAGGLLLARTLHCSGLEKAMSAALAPWRAPRAVHDPAKVLTDMAIAVALGGDCAADVAVVRAQPELFGQVASDATVSRLIAALADDVDAALTAIRTAR
ALARQRVWRRQRPLPGAGNQVIIDLDATLVTAHSDKEGATPTFKYGYGFHPMLAFVDHGSHGSGEALAGLLRPGSAGSNSAADHISVLDAALAQLPDHER
AQVLVRTDTGGGVKDFLHHITDLKLQYSVGFYGMPPIVEALNRVPPQAWRAALDGDGAPREGAQVAELTRYLPDTLRGWPAGMRVIARRERPHPGAQLRL
TDDNGWRITCFATNTPGWSIADLEVRHRQRARAEDRIRNLKDTGLTNLPFHGFDQNQLWLEITLLAADLLVWTQVLAFTAHPARRWEPKRLRLRLLAVAG
RIIHTGRRRLLRLPRGWPWSDLIETGWTALQTA
ALARQRVWRRQRPLPGAGNQVIIDLDATLVTAHSDKEGATPTFKYGYGFHPMLAFVDHGSHGSGEALAGLLRPGSAGSNSAADHISVLDAALAQLPDHER
AQVLVRTDTGGGVKDFLHHITDLKLQYSVGFYGMPPIVEALNRVPPQAWRAALDGDGAPREGAQVAELTRYLPDTLRGWPAGMRVIARRERPHPGAQLRL
TDDNGWRITCFATNTPGWSIADLEVRHRQRARAEDRIRNLKDTGLTNLPFHGFDQNQLWLEITLLAADLLVWTQVLAFTAHPARRWEPKRLRLRLLAVAG
RIIHTGRRRLLRLPRGWPWSDLIETGWTALQTA
Blast result :
Comments
ISMgi1 is 68% aa similar to IS1676.
References
1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Miller,C. and Richardson,P. (2007) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Miller,C. and Richardson,P. (2007) Direct submission GenBank.