ISMaq4
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008740 | ND | Marinobacter aquaeolei | Marinobacter aquaeolei VT8 |
DNA section
IS Length : 1559 bp
Ends
IR Length : 17/18
IRL : CCCGGATTTCTCATGAGGGGATAAAAGAAAGCGGCTGAAAGTGTTAAAAT
IRR : CCCGGATTTCTCATAGGTCCCCGGCAAGTCTCGCAGACTTTGCGGGTTAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGATAGTCTG | CTAG | ACGCCTGTAT | 4 |
CCTAAGAGGG | CTAG | TATTTCAGAT | 4 |
AACCGGCAAG | CTAG | CATCAATGAG | 4 |
TGGGGCAATA | TTAG | TACTCAGATC | 4 |
DNA sequence
CCCGGATTTCTCATGAGGGGATAAAAGAAAGCGGCTGAAAGTGTTAAAATTTCAGGACCTTACACCATCAATCAACACCAAAAGCCGCTATCCAAAATGG
TACCTGAAAAACTGACCTTCTCGCCACTGTCTCGCCGTCAAATTGAAGCCGATTTCTCCGGCGGCCATATCACCTCCGATGCCGGCCTGCTCCTGCTTCG
CGAAGTCGACAATCAACACCAGCTCACTCAGCGCCTGGCTACGGTGCTGGACGATACCCGTAATCCGGTGCTGGTTCGCCACAAGCTTCAAACCATGATC
CGGCAACGGGTCTTTGGCGTGGCTGCCGGGTACGAAGATCTGAACGATCACGAAACGTTACGCGCTGACCAGGCACTTCAGACCGCGACCGGTGAAGAGG
CCATTCTGGCGGGCAAATCGACCTTGTGCCGCATGGAACAGCGCGTGGACCGGCAGGCGGTGGTCAAAGCCCACGAACTGCTGTGGCATCACTTCATTGA
ACAGCACGAGACTCCACCCAAGGAAATTGTGCTGGATTTTGATGGCACCGATGTTCCGGTGCATGGCGACCAGCCCGGCAAGTTCTTTAACGCCTACTAC
GATCACCATTGTTACTTCCCGCTGTACGTGTTCTGCGGTCGCCATCTGCTGGTGAGCTACCTGCGCACCAGCAACCGAAGCGACAGCCGCCACAGCTGGG
CCATTCTGGCCCTGCTGGTGAAGTTCATCCGGCAGTACTGGCCGGATACCCGCATCGTGTTCCGGGGTGACAGCGGCTTCTATCGCCCCCGATTGCTGAG
CTGGTGCGACCGGAATAACGTGGATTACCTTGTGGGCATCAGCAAAAACAGCCGGCTGCTCAAGGAGGTGGACGTACCCTCGATGCTGGTTCGCAGGGCT
CACGGGGAGTTGGGAGAAAAAGTCTCCGCCACCTACCGGTTCCAGTACCAGGCCCGAACCTGGAAACACCCCCGCTGGGTGATCGCGCGTCTGGAGGAGG
GCGAACTGGGTGCCAACCCCAGGTTCATTGTCAGCTCCCGTTACGACGACGGCGTTAAACTCTACTACGAGCAATACTGTGCCCGGGGTGACATGGAAAA
CCGGATCAAGGATCAGCAGTTGTGTCTGTTCGCAGATCGCACCTCCAGCACGCGGTGGTGGACCAATCAGTGGCGGTTGCTCCTGTCGGGCTTTGCCTAC
ACGTTGTTCGAGCGATTACGGGCCCACTTGAAGAAGACGCCCTTCGAGAGAATGAGCGCCAGTAACCTGCGGCTGAAGCTGATCAAGGTGGGCGCGGTCA
TCATTCGCAACACTCGGCGCATACGGGTGTTGATGAGTGATGCCTATCCTTACAAAGACGAACTCTCTGACCTGGTGCGTCGACTGGTTCCGGGATAGAA
GCCTGGGCTCCCCCGGCCCGACTCAATGGGGGAAAGGGGGCCGTGTGTCCGGACAACAGAAATTGATCAGTTATTAATCAATCGCGGCCGCAAATGAGCG
GTCATGGCGATAACCCGCAAAGTCTGCGAGACTTGCCGGGGACCTATGAGAAATCCGGG
TACCTGAAAAACTGACCTTCTCGCCACTGTCTCGCCGTCAAATTGAAGCCGATTTCTCCGGCGGCCATATCACCTCCGATGCCGGCCTGCTCCTGCTTCG
CGAAGTCGACAATCAACACCAGCTCACTCAGCGCCTGGCTACGGTGCTGGACGATACCCGTAATCCGGTGCTGGTTCGCCACAAGCTTCAAACCATGATC
CGGCAACGGGTCTTTGGCGTGGCTGCCGGGTACGAAGATCTGAACGATCACGAAACGTTACGCGCTGACCAGGCACTTCAGACCGCGACCGGTGAAGAGG
CCATTCTGGCGGGCAAATCGACCTTGTGCCGCATGGAACAGCGCGTGGACCGGCAGGCGGTGGTCAAAGCCCACGAACTGCTGTGGCATCACTTCATTGA
ACAGCACGAGACTCCACCCAAGGAAATTGTGCTGGATTTTGATGGCACCGATGTTCCGGTGCATGGCGACCAGCCCGGCAAGTTCTTTAACGCCTACTAC
GATCACCATTGTTACTTCCCGCTGTACGTGTTCTGCGGTCGCCATCTGCTGGTGAGCTACCTGCGCACCAGCAACCGAAGCGACAGCCGCCACAGCTGGG
CCATTCTGGCCCTGCTGGTGAAGTTCATCCGGCAGTACTGGCCGGATACCCGCATCGTGTTCCGGGGTGACAGCGGCTTCTATCGCCCCCGATTGCTGAG
CTGGTGCGACCGGAATAACGTGGATTACCTTGTGGGCATCAGCAAAAACAGCCGGCTGCTCAAGGAGGTGGACGTACCCTCGATGCTGGTTCGCAGGGCT
CACGGGGAGTTGGGAGAAAAAGTCTCCGCCACCTACCGGTTCCAGTACCAGGCCCGAACCTGGAAACACCCCCGCTGGGTGATCGCGCGTCTGGAGGAGG
GCGAACTGGGTGCCAACCCCAGGTTCATTGTCAGCTCCCGTTACGACGACGGCGTTAAACTCTACTACGAGCAATACTGTGCCCGGGGTGACATGGAAAA
CCGGATCAAGGATCAGCAGTTGTGTCTGTTCGCAGATCGCACCTCCAGCACGCGGTGGTGGACCAATCAGTGGCGGTTGCTCCTGTCGGGCTTTGCCTAC
ACGTTGTTCGAGCGATTACGGGCCCACTTGAAGAAGACGCCCTTCGAGAGAATGAGCGCCAGTAACCTGCGGCTGAAGCTGATCAAGGTGGGCGCGGTCA
TCATTCGCAACACTCGGCGCATACGGGTGTTGATGAGTGATGCCTATCCTTACAAAGACGAACTCTCTGACCTGGTGCGTCGACTGGTTCCGGGATAGAA
GCCTGGGCTCCCCCGGCCCGACTCAATGGGGGAAAGGGGGCCGTGTGTCCGGACAACAGAAATTGATCAGTTATTAATCAATCGCGGCCGCAAATGAGCG
GTCATGGCGATAACCCGCAAAGTCTGCGAGACTTGCCGGGGACCTATGAGAAATCCGGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1302 bp | 433 aa | 97 | 1398 | + | No |
Chemistry : DDE
ORF sequence :
MVPEKLTFSPLSRRQIEADFSGGHITSDAGLLLLREVDNQHQLTQRLATVLDDTRNPVLVRHKLQTMIRQRVFGVAAGYEDLNDHETLRADQALQTATGE
EAILAGKSTLCRMEQRVDRQAVVKAHELLWHHFIEQHETPPKEIVLDFDGTDVPVHGDQPGKFFNAYYDHHCYFPLYVFCGRHLLVSYLRTSNRSDSRHS
WAILALLVKFIRQYWPDTRIVFRGDSGFYRPRLLSWCDRNNVDYLVGISKNSRLLKEVDVPSMLVRRAHGELGEKVSATYRFQYQARTWKHPRWVIARLE
EGELGANPRFIVSSRYDDGVKLYYEQYCARGDMENRIKDQQLCLFADRTSSTRWWTNQWRLLLSGFAYTLFERLRAHLKKTPFERMSASNLRLKLIKVGA
VIIRNTRRIRVLMSDAYPYKDELSDLVRRLVPG
EAILAGKSTLCRMEQRVDRQAVVKAHELLWHHFIEQHETPPKEIVLDFDGTDVPVHGDQPGKFFNAYYDHHCYFPLYVFCGRHLLVSYLRTSNRSDSRHS
WAILALLVKFIRQYWPDTRIVFRGDSGFYRPRLLSWCDRNNVDYLVGISKNSRLLKEVDVPSMLVRRAHGELGEKVSATYRFQYQARTWKHPRWVIARLE
EGELGANPRFIVSSRYDDGVKLYYEQYCARGDMENRIKDQQLCLFADRTSSTRWWTNQWRLLLSGFAYTLFERLRAHLKKTPFERMSASNLRLKLIKVGA
VIIRNTRRIRVLMSDAYPYKDELSDLVRRLVPG
Blast result :
Comments
ISMaq4 is 61% aa similar to ISThsp13.
References
1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Edwards,K. and Richardson,P. (2007) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Edwards,K. and Richardson,P. (2007) Direct submission GenBank.