ISMrsp6
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAXY01000020 | ND | Marinobacter sp. | Marinobacter sp. ELB17 |
DNA section
IS Length : 1655 bp
Ends
IR Length : 20/28
IRL : CCTGAATCCGTGACTTCACGCGACCAAATTAACTCTTAAAGTCTTTAATA
IRR : CCTGAATCAGTGACTCCGTCCGAATATAGCAGGCAAAGCCTTGGCTGACC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATAGACTTTG | ATTTA | TTCAATTAAT | 5 |
DNA sequence
CCTGAATCCGTGACTTCACGCGACCAAATTAACTCTTAAAGTCTTTAATAACAAGGGTTTAGAAGGTATAATGCCATATTATGCCCACTCACCCAGTCAG
TGCATCAACCCATGCGTACTTTTACTCTCCAGCAATCAAAGACCGAAGTCTATACACCTCACGGCGGACTGGCCCTGGTGGGTCATTGCTTGAACCGGCA
CACCTCTCTGAACAAGACGGCCCGTACCATCGTCAAGCGTCACGGCATTCCGAATATGGACCTGATCCGGACCTATCTGGGCCTGATCACTCTGGGGAAA
AGCGATTTTGAGGCGGTTGAGTCGGTCCGCACGGATCCATTCTTTAAGTCCGCCATGGGGATCAAACAGGCACCGTCCTCGGCCCGATTGCGGCAACGCT
TTGATGAAGACGCCAAGCTGTTGATCCCTGTGCTGGAGGATGCCAGTGGCGAGTTTTTGGCCTCCATAAAGGGCCCGGTCACCCCGCTGGCGATGGGGCA
CGTGGCTCTGGATATGGATGTTTTTCCCATGGACAACAGCCAGACCCGCAAGGAAGGCGTCAGTTACACCTACAAAGGCTACGACGGTTATGCTCCGATT
GCGGCTTATTTGGGTCAGGAAGGCGGGTGCCTGGGTTGTGAGCTGCGCCCCGGCAGCCAGCATGCCAACAAGGGTTTTATCGATACTCTTGGTCGTGTCT
TGCCGCGCGCCCGCTCTCTGACGGCAGCCCCAATCCTAGTGCGTTTGGACAGCGCTCATGATGCCCGTGAGAATCGGAACTTTCTGCGCCAGCAGGAACA
CATCGATTTCCTGATCAAATGGAATCCCCGCAAACAGGATCCGTTGGCGTGGGCGGACAAAGCCCAATCACAAAAAGCGTGGACGTTGAACCGTGACGGC
AAGATGGAAGCCATTCTGTCGGAAGCTCTGCCAGACGAGCCCGGCGTTCGCCGAATCGTCAAGGTGACGGTGCGCACCAGCGATGCCCGAGGCCAACTGT
ACCTGGAGCCGGAAATCGGTCTGGAAGGCTGGATCACATCACTGCCTGCCCACGTGGCGGATGAACAGCAAGTTATGGCTCTGTACCGCGATCATGCCAC
CAGCGAACAATTCCACAGTGAGTTCAAGACCGACCTGGACTTGGAACGTCTACCTTCGGGCAAGTTCGACACCAACAACCTGGTGATGGCCTTCGCTACG
CTCGGCTACAACCTGCTGCGCTGGATGGGGCTGAGGCTCACCGGCCCGGATGCGCCAATACGGCACCCGGCCAAACGCCGCCGCCTAAGAACCGTGATGC
AGGAACTGATGTATATGGCCTGCCGCCTGGTCCACAGCAGCCGCCAGTGTTTCCTGCGTTTCGGCCGACACTGCCCGGGCTTTGCCGTTTACCGCGATCT
CTATCGAGGCCTTGCCTCCTCTGGGTAGACAGCCTGGCTCTCTTTCTTGCCCGACTCCAATCCGGCATATGATTTGGATAGAGATACTCTTGCCTGAACA
CCAAGAATTGATCAAAAATGATCTTTTTTAGCTGTGTCAATCGGAAAGATGACACACGTATTTTTAACATAATCGGAATAGCTTCAAAAAAATAAGTTTG
GCTTGGGTCAGCCAAGGCTTTGCCTGCTATATTCGGACGGAGTCACTGATTCAGG
TGCATCAACCCATGCGTACTTTTACTCTCCAGCAATCAAAGACCGAAGTCTATACACCTCACGGCGGACTGGCCCTGGTGGGTCATTGCTTGAACCGGCA
CACCTCTCTGAACAAGACGGCCCGTACCATCGTCAAGCGTCACGGCATTCCGAATATGGACCTGATCCGGACCTATCTGGGCCTGATCACTCTGGGGAAA
AGCGATTTTGAGGCGGTTGAGTCGGTCCGCACGGATCCATTCTTTAAGTCCGCCATGGGGATCAAACAGGCACCGTCCTCGGCCCGATTGCGGCAACGCT
TTGATGAAGACGCCAAGCTGTTGATCCCTGTGCTGGAGGATGCCAGTGGCGAGTTTTTGGCCTCCATAAAGGGCCCGGTCACCCCGCTGGCGATGGGGCA
CGTGGCTCTGGATATGGATGTTTTTCCCATGGACAACAGCCAGACCCGCAAGGAAGGCGTCAGTTACACCTACAAAGGCTACGACGGTTATGCTCCGATT
GCGGCTTATTTGGGTCAGGAAGGCGGGTGCCTGGGTTGTGAGCTGCGCCCCGGCAGCCAGCATGCCAACAAGGGTTTTATCGATACTCTTGGTCGTGTCT
TGCCGCGCGCCCGCTCTCTGACGGCAGCCCCAATCCTAGTGCGTTTGGACAGCGCTCATGATGCCCGTGAGAATCGGAACTTTCTGCGCCAGCAGGAACA
CATCGATTTCCTGATCAAATGGAATCCCCGCAAACAGGATCCGTTGGCGTGGGCGGACAAAGCCCAATCACAAAAAGCGTGGACGTTGAACCGTGACGGC
AAGATGGAAGCCATTCTGTCGGAAGCTCTGCCAGACGAGCCCGGCGTTCGCCGAATCGTCAAGGTGACGGTGCGCACCAGCGATGCCCGAGGCCAACTGT
ACCTGGAGCCGGAAATCGGTCTGGAAGGCTGGATCACATCACTGCCTGCCCACGTGGCGGATGAACAGCAAGTTATGGCTCTGTACCGCGATCATGCCAC
CAGCGAACAATTCCACAGTGAGTTCAAGACCGACCTGGACTTGGAACGTCTACCTTCGGGCAAGTTCGACACCAACAACCTGGTGATGGCCTTCGCTACG
CTCGGCTACAACCTGCTGCGCTGGATGGGGCTGAGGCTCACCGGCCCGGATGCGCCAATACGGCACCCGGCCAAACGCCGCCGCCTAAGAACCGTGATGC
AGGAACTGATGTATATGGCCTGCCGCCTGGTCCACAGCAGCCGCCAGTGTTTCCTGCGTTTCGGCCGACACTGCCCGGGCTTTGCCGTTTACCGCGATCT
CTATCGAGGCCTTGCCTCCTCTGGGTAGACAGCCTGGCTCTCTTTCTTGCCCGACTCCAATCCGGCATATGATTTGGATAGAGATACTCTTGCCTGAACA
CCAAGAATTGATCAAAAATGATCTTTTTTAGCTGTGTCAATCGGAAAGATGACACACGTATTTTTAACATAATCGGAATAGCTTCAAAAAAATAAGTTTG
GCTTGGGTCAGCCAAGGCTTTGCCTGCTATATTCGGACGGAGTCACTGATTCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1317 bp | 438 aa | 112 | 1428 | + | No |
Chemistry : DDE
ORF sequence :
MRTFTLQQSKTEVYTPHGGLALVGHCLNRHTSLNKTARTIVKRHGIPNMDLIRTYLGLITLGKSDFEAVESVRTDPFFKSAMGIKQAPSSARLRQRFDED
AKLLIPVLEDASGEFLASIKGPVTPLAMGHVALDMDVFPMDNSQTRKEGVSYTYKGYDGYAPIAAYLGQEGGCLGCELRPGSQHANKGFIDTLGRVLPRA
RSLTAAPILVRLDSAHDARENRNFLRQQEHIDFLIKWNPRKQDPLAWADKAQSQKAWTLNRDGKMEAILSEALPDEPGVRRIVKVTVRTSDARGQLYLEP
EIGLEGWITSLPAHVADEQQVMALYRDHATSEQFHSEFKTDLDLERLPSGKFDTNNLVMAFATLGYNLLRWMGLRLTGPDAPIRHPAKRRRLRTVMQELM
YMACRLVHSSRQCFLRFGRHCPGFAVYRDLYRGLASSG
AKLLIPVLEDASGEFLASIKGPVTPLAMGHVALDMDVFPMDNSQTRKEGVSYTYKGYDGYAPIAAYLGQEGGCLGCELRPGSQHANKGFIDTLGRVLPRA
RSLTAAPILVRLDSAHDARENRNFLRQQEHIDFLIKWNPRKQDPLAWADKAQSQKAWTLNRDGKMEAILSEALPDEPGVRRIVKVTVRTSDARGQLYLEP
EIGLEGWITSLPAHVADEQQVMALYRDHATSEQFHSEFKTDLDLERLPSGKFDTNNLVMAFATLGYNLLRWMGLRLTGPDAPIRHPAKRRRLRTVMQELM
YMACRLVHSSRQCFLRFGRHCPGFAVYRDLYRGLASSG
Blast result :
Comments
ISMrsp6 is 67% aa similar to ISMasp7.
References
1] Isfinder annotation (2009)
2] Ward,B., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2006) Direct submission GenBank.
2] Ward,B., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2006) Direct submission GenBank.