ISMae9
- Family IS1380
- Group
Isoform Synonym(s) ISMae30
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010296 | ND | Microcystis aeruginosa | Microcystis aeruginosa NIES-843 |
DNA section
IS Length : 1988 bp
Ends
IR Length : 17
IRL : CCCGCATTTCTCACAAAAAGTACGATCACCAACCCCCGAAGCCTTACAAA
IRR : CCCGCATTTCTCACAAACTGAATTAAGAACCTAATTTGGAGGTTAAAAGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AACCATTGCT | TAA | CGATCGATCA | 3 |
GACTACTTAG | ATAAAGATCT | 0 | |
TCAACAAGAA | TCAAGACCCC | 0 | |
AGTGGTTAGC | TTGT | GTAAATGGTC | 4 |
TCATTAGTGC | TAGGA | GAGTAACTAA | 5 |
AAGAGAAAAG | CAAA | GACTATTACT | 4 |
ATCGAATCCC | TTAAA | GATACCCATT | 5 |
AGTCCAAGAG | TTAA | GATTGAAAGA | 4 |
CCGGTCTGTG | AAGAAGAGAT | 0 | |
TGATGGGTGC | TAGAG | ACAAGGTTGC | 5 |
AAAACCCCAA | TTA | ACCCTAAGTA | 3 |
GGGGGAACGC | ACCAT | GCACATTTAT | 5 |
DNA sequence
CCCGCATTTCTCACAAAAAGTACGATCACCAACCCCCGAAGCCTTACAAAATCTGGGTTTTGACTGGGTGATCGCCTTGTAGCAAAAACGACAGTGTGTT
GTTAGGATTCAACTTAAGCTCATCATCAATTAGACCTTGAAAAAAGAACAAATTTAAAATGCGTATTTTTAGGTTAATTAGTTGATAAAGTCTCAATTTT
AAGTAGAGAATGAAGTCAAAAGCTTGCTATAATTTAATCATTAAAACTATTTAAAGTATGTCAAGTTTATGACTCCTAGTTCAGACCAGTCTCGACTCAA
TCAATTAAATTTTGGAAACCTCAATGGAAGACAAGTAATCGCTAATTTTGAGGGAGGAAAAATCACCTCAGATGCAGGAATTATTTTGATGGCAGAGTTA
GACCAAAAGCTAAAAATAACGGCTCGGTTTGCCGAATGTTTTCGAGATTATCGAAATTCATCCTATCTAGATTATTCAGTTCATGAACTACTCGCACAAA
GAGTTTATGGGATAGTTTTGGGATATGAGGATGTCAATGATCATGATAAATTACGTCATGCTCCAGCTTTAGCAATAGCATTGAAAAAACTAAATTTTAT
TGACTCAGCCCAAGCAAATTTAGCGGGAAAAAGTACAATTAATCGACTAGAATATTGTCCGGAAACAGTCATCAATCAAGAGAACAGTCGTTACCATAAA
ATCGAGCCTAACCCCAAAGAAATTGAAAAAGCTTTTGTGGACATCTTTCTAGAATCCTACAAAAAGCCACCGAAACCAATTATTTTAGACATGGATGTCA
CCGATGACCAAGTGCATGGAAATCAAGAGGGAGCGTTTTTCAATACTTATTATAAAGGAGTGTGTTATGCTCCTTTGTATATTTTCTGTGAGCATCATTT
ATTAGTAGCTAAACTCCGGTCTTCTCATGTAGATACTGCTGGGGGAGCATTAGAAGAATTGCAGCGAATAATCGGTATAATTCGAGAAAAATGGTCAGAT
ACGCAGATATTAGTACGAGGAGATAGTGCCTATTCCCGTGAAGATATCATGAAATTTTGCGAAAGTCAAGCAGGAGTTGATTATGTTTTAGCAATGGCAA
CGAATAGTCAATTAAAATTACGAGCGACCGATGTAATTGAGAAAGCTAAGGCAGATTACGAGCAAAGACTTCAGCCAGTTACTGAATTAATGGAGACGTT
ATTTTCTCCCGATGAAGAGTTAGGAGAATTGGCGAAATTGGTACCAGAATCGACTTGGTATCGTTCCCTATGTTATCAAACCCAAAAATCCTGGAGCCGT
TCAAGAAGAGTGGTGACAAAAGTTTGTCCTGGTAGTGAGGGCGTAAAAATTCGCCACGTTGTGACTTCTTTACCTGCATCAAAGATTCCCCCATCTAAAC
TTTACACTGAAAAATATTGCCCCAGAGGTGAGAGGTCAAATCGAATTAAAGAGCAACAATTAGACTTATTTGCTGACCGGAATTCGACACAGACATTTGA
GAGTAATCAATTAAGACTTTGGTTGTCATCAATGGCTTATGTTTTAATGCAAGCTTTTCGTCAAAATTGTTTGGCTAAAACTTCTTTTGCCAAAGCGACA
GTGGGAACAATTCGCCTTAATTTCCTTAAATTAGGAGCTAGAATTACTGTTAGTGTCAGAAGAATTTTAATCGCAATTGCCAGTTCTTGTCCCTATCAAG
ATATTTTAGCGATAGCTTACTCTAGAATTCAAGCGATAGCGGGAACTGGATAAGTTGAAGAGTTTTCAAAGATCATTAAATAGTCTTAAAAATGGCTGCT
TATAAATTCAGCTAACTTTGTCGTGAACATTTTCCCTAATTGACGGAATTTTTCCAGTAATTCAGGAATTTTTTGATTAGTTTAGTCAGATTATTCCTTG
ATAACTAAGCGGGTTTCTCTTATTTTTGAAAAACACCAACTTTTAACCTCCAAATTAGGTTCTTAATTCAGTTTGTGAGAAATGCGGG
GTTAGGATTCAACTTAAGCTCATCATCAATTAGACCTTGAAAAAAGAACAAATTTAAAATGCGTATTTTTAGGTTAATTAGTTGATAAAGTCTCAATTTT
AAGTAGAGAATGAAGTCAAAAGCTTGCTATAATTTAATCATTAAAACTATTTAAAGTATGTCAAGTTTATGACTCCTAGTTCAGACCAGTCTCGACTCAA
TCAATTAAATTTTGGAAACCTCAATGGAAGACAAGTAATCGCTAATTTTGAGGGAGGAAAAATCACCTCAGATGCAGGAATTATTTTGATGGCAGAGTTA
GACCAAAAGCTAAAAATAACGGCTCGGTTTGCCGAATGTTTTCGAGATTATCGAAATTCATCCTATCTAGATTATTCAGTTCATGAACTACTCGCACAAA
GAGTTTATGGGATAGTTTTGGGATATGAGGATGTCAATGATCATGATAAATTACGTCATGCTCCAGCTTTAGCAATAGCATTGAAAAAACTAAATTTTAT
TGACTCAGCCCAAGCAAATTTAGCGGGAAAAAGTACAATTAATCGACTAGAATATTGTCCGGAAACAGTCATCAATCAAGAGAACAGTCGTTACCATAAA
ATCGAGCCTAACCCCAAAGAAATTGAAAAAGCTTTTGTGGACATCTTTCTAGAATCCTACAAAAAGCCACCGAAACCAATTATTTTAGACATGGATGTCA
CCGATGACCAAGTGCATGGAAATCAAGAGGGAGCGTTTTTCAATACTTATTATAAAGGAGTGTGTTATGCTCCTTTGTATATTTTCTGTGAGCATCATTT
ATTAGTAGCTAAACTCCGGTCTTCTCATGTAGATACTGCTGGGGGAGCATTAGAAGAATTGCAGCGAATAATCGGTATAATTCGAGAAAAATGGTCAGAT
ACGCAGATATTAGTACGAGGAGATAGTGCCTATTCCCGTGAAGATATCATGAAATTTTGCGAAAGTCAAGCAGGAGTTGATTATGTTTTAGCAATGGCAA
CGAATAGTCAATTAAAATTACGAGCGACCGATGTAATTGAGAAAGCTAAGGCAGATTACGAGCAAAGACTTCAGCCAGTTACTGAATTAATGGAGACGTT
ATTTTCTCCCGATGAAGAGTTAGGAGAATTGGCGAAATTGGTACCAGAATCGACTTGGTATCGTTCCCTATGTTATCAAACCCAAAAATCCTGGAGCCGT
TCAAGAAGAGTGGTGACAAAAGTTTGTCCTGGTAGTGAGGGCGTAAAAATTCGCCACGTTGTGACTTCTTTACCTGCATCAAAGATTCCCCCATCTAAAC
TTTACACTGAAAAATATTGCCCCAGAGGTGAGAGGTCAAATCGAATTAAAGAGCAACAATTAGACTTATTTGCTGACCGGAATTCGACACAGACATTTGA
GAGTAATCAATTAAGACTTTGGTTGTCATCAATGGCTTATGTTTTAATGCAAGCTTTTCGTCAAAATTGTTTGGCTAAAACTTCTTTTGCCAAAGCGACA
GTGGGAACAATTCGCCTTAATTTCCTTAAATTAGGAGCTAGAATTACTGTTAGTGTCAGAAGAATTTTAATCGCAATTGCCAGTTCTTGTCCCTATCAAG
ATATTTTAGCGATAGCTTACTCTAGAATTCAAGCGATAGCGGGAACTGGATAAGTTGAAGAGTTTTCAAAGATCATTAAATAGTCTTAAAAATGGCTGCT
TATAAATTCAGCTAACTTTGTCGTGAACATTTTCCCTAATTGACGGAATTTTTCCAGTAATTCAGGAATTTTTTGATTAGTTTAGTCAGATTATTCCTTG
ATAACTAAGCGGGTTTCTCTTATTTTTGAAAAACACCAACTTTTAACCTCCAAATTAGGTTCTTAATTCAGTTTGTGAGAAATGCGGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1485 bp | 494 aa | 269 | 1753 | + | No |
Chemistry : DDE
ORF sequence :
MTPSSDQSRLNQLNFGNLNGRQVIANFEGGKITSDAGIILMAELDQKLKITARFAECFRDYRNSSYLDYSVHELLAQRVYGIVLGYEDVNDHDKLRHAPA
LAIALKKLNFIDSAQANLAGKSTINRLEYCPETVINQENSRYHKIEPNPKEIEKAFVDIFLESYKKPPKPIILDMDVTDDQVHGNQEGAFFNTYYKGVCY
APLYIFCEHHLLVAKLRSSHVDTAGGALEELQRIIGIIREKWSDTQILVRGDSAYSREDIMKFCESQAGVDYVLAMATNSQLKLRATDVIEKAKADYEQR
LQPVTELMETLFSPDEELGELAKLVPESTWYRSLCYQTQKSWSRSRRVVTKVCPGSEGVKIRHVVTSLPASKIPPSKLYTEKYCPRGERSNRIKEQQLDL
FADRNSTQTFESNQLRLWLSSMAYVLMQAFRQNCLAKTSFAKATVGTIRLNFLKLGARITVSVRRILIAIASSCPYQDILAIAYSRIQAIAGTG
LAIALKKLNFIDSAQANLAGKSTINRLEYCPETVINQENSRYHKIEPNPKEIEKAFVDIFLESYKKPPKPIILDMDVTDDQVHGNQEGAFFNTYYKGVCY
APLYIFCEHHLLVAKLRSSHVDTAGGALEELQRIIGIIREKWSDTQILVRGDSAYSREDIMKFCESQAGVDYVLAMATNSQLKLRATDVIEKAKADYEQR
LQPVTELMETLFSPDEELGELAKLVPESTWYRSLCYQTQKSWSRSRRVVTKVCPGSEGVKIRHVVTSLPASKIPPSKLYTEKYCPRGERSNRIKEQQLDL
FADRNSTQTFESNQLRLWLSSMAYVLMQAFRQNCLAKTSFAKATVGTIRLNFLKLGARITVSVRRILIAIASSCPYQDILAIAYSRIQAIAGTG
Blast result :
Comments
ISMae9 is 59% aa similar to IS1380.
References
1] ISfinder annotation (2009)
2] Kaneko,T., Nakajima,N., Okamoto,S., Suzuki,I., Tanabe,Y.,Tamaoki,M., Nakamura,Y., Kasai,F., Watanabe,A., Kawashima,K.,Kishida,Y., Ono,A., Shimizu,Y., Takahashi,C., Minami,C., Fujishiro,T., Kohara,M., Katoh,M., Nakazaki,N., Nakayama,S., Yamada,M., Tabata,S. and Watanabe,M.M. DNA Res. (2007) 14 (6), 247-256
2] Kaneko,T., Nakajima,N., Okamoto,S., Suzuki,I., Tanabe,Y.,Tamaoki,M., Nakamura,Y., Kasai,F., Watanabe,A., Kawashima,K.,Kishida,Y., Ono,A., Shimizu,Y., Takahashi,C., Minami,C., Fujishiro,T., Kohara,M., Katoh,M., Nakazaki,N., Nakayama,S., Yamada,M., Tabata,S. and Watanabe,M.M. DNA Res. (2007) 14 (6), 247-256