ISOan2
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NW_002475472 | ND | Octadecabacter antarcticus | Octadecabacter antarcticus 307 |
DNA section
IS Length : 1655 bp
Ends
IR Length : 19/26
IRL : CCCCAAGTAACTTGACGTTTTCACCCCTCTTACGGTCAGTAATATGTTAT
IRR : CCCCAAGTGGCATGCCATTTGACACCAATATCACCTAAATTCGCTTGCCA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AACCCGCATT | AATGTCGGAG | 0 |
DNA sequence
CCCCAAGTAACTTGACGTTTTCACCCCTCTTACGGTCAGTAATATGTTATATTTCAGCATGTTAATTGGGCTTGAGGTTGCGGATTATGGATCACCCAGA
GGGTGCACGCGAAACAGGTTATGGGCGGCTTGGTTTTGACCGCCGGGTGCGGCTGGAATTTCGTGGCACGCAGCTCAGTTCGGACGGCGGTCTCCTGGTG
ATGCGCGAGTTGGATGACGCCCTCGGGCTGTCTAACCTTGCGTCGGGGGCTCTCAATGACACCCGTCGCGGCAAGAACAGGGTTCACCGGCTCGACGGGC
TGTTCCGGCAATCGGTCTATGGGCGGCTGGCGGGCTACGAAGACGTCAACGATGCTGACCGTCTCGCCTTTGATCCCGTCATGCGCCAGGTTGTCGGTGG
CCGTGCCGTCGATGCGCAGGCGGCCTCGGCATCGCAGATGGGGCGGTTCGAGACTGAGACGCTGGCCCTGCCCGAGAACCGGGCGGCGCTGGCCGATCTG
AACGGCACGTGGATTGACCGCTTTCATGATCGCAACGGGCTGAAGTACATCACGCTTGACATGGACAGCTCGGTCAGCCCGACCCATGGCGATCAGGAAG
GCACAGCCTGGAACGGGCATTTTGACTGCACCTGCTACCACCCAAACTTCTTGTTCAACCAGTTCGGCATGCTGGAGCGCTGCGCCCTGCGCAACGGCAA
TGTCCACAGCGCCGACGGCTGGCGGGATGTCCTCGATCCCGTCATCGCCCGTTATGCTGGCCGCAAACTTGGTGGCCGCTTCTTCCGCGCCGACGCCGCC
TATGCGATGCCCGCGATCTACGAGCGGCTGGAGGAAGCGGGCTATTTCTACGCCATCCGACTGCCCACCAATGCAGTGCTCAAGGAGAAGATCGCGCATC
CACTGACCCGGCCTGTGGGGCGTCCGTCGCTGACCAAGGTCAAGCGCATCTACGAGGACATCGAGTATCAGGCGCAAAGCTGGGATAAGCCACGCCGGGT
GATCGCCAAGATCGAATGGCATCCGGGCGAGCTGTTCCCAAAAGTCGGCTTCATCGTCACCAATATGCCGATGGACCCGGACTGGGTGGTGCGCTTCTAC
AACCAGCGTGGCACCGCCGAACAGCACATCAAGGAAGGCAAATACGCCTTCCGCTGGACGCGGCTGTCATGCAAGCGGTTTCGTGACAATGAGGTCCGGC
TGCAACTGCACGCGTTGGCCTACAACCTGGCAACGTTCCTGCGCTGCATCGAGCTCCCAGCGGCCATGGCCAACTGGTCGCTGACATCCCTCCAGCTCAA
GCTGATCAAGATGGGGGCCCGCGTCGTGCGTCACGCCCGCGCCATCACCTTCCAGCTTGCCGAGGTGGCGGTCACAGGCCCCATGGTCAGGGCCATCTTC
ACTGTGATCCACCACCTTCGAGCACCTCCGTCATGTGCGTGACAGCGATCCTGACAGAAACTGAACGAAAGCGGCAGGACAGTTCTGTCCACCGCGCTGA
AGAACGGCGATGCTGGGCCAGAATGATGCGAGTTTGCGGCCCCACCTGCCCGCATTCGAGCGTTCTGGCGCACGCAAACGCCGCTCAGGGCCCAAAACGC
TTGATTGGCAAGCGAATTTAGGTGATATTGGTGTCAAATGGCATGCCACTTGGGG
GGGTGCACGCGAAACAGGTTATGGGCGGCTTGGTTTTGACCGCCGGGTGCGGCTGGAATTTCGTGGCACGCAGCTCAGTTCGGACGGCGGTCTCCTGGTG
ATGCGCGAGTTGGATGACGCCCTCGGGCTGTCTAACCTTGCGTCGGGGGCTCTCAATGACACCCGTCGCGGCAAGAACAGGGTTCACCGGCTCGACGGGC
TGTTCCGGCAATCGGTCTATGGGCGGCTGGCGGGCTACGAAGACGTCAACGATGCTGACCGTCTCGCCTTTGATCCCGTCATGCGCCAGGTTGTCGGTGG
CCGTGCCGTCGATGCGCAGGCGGCCTCGGCATCGCAGATGGGGCGGTTCGAGACTGAGACGCTGGCCCTGCCCGAGAACCGGGCGGCGCTGGCCGATCTG
AACGGCACGTGGATTGACCGCTTTCATGATCGCAACGGGCTGAAGTACATCACGCTTGACATGGACAGCTCGGTCAGCCCGACCCATGGCGATCAGGAAG
GCACAGCCTGGAACGGGCATTTTGACTGCACCTGCTACCACCCAAACTTCTTGTTCAACCAGTTCGGCATGCTGGAGCGCTGCGCCCTGCGCAACGGCAA
TGTCCACAGCGCCGACGGCTGGCGGGATGTCCTCGATCCCGTCATCGCCCGTTATGCTGGCCGCAAACTTGGTGGCCGCTTCTTCCGCGCCGACGCCGCC
TATGCGATGCCCGCGATCTACGAGCGGCTGGAGGAAGCGGGCTATTTCTACGCCATCCGACTGCCCACCAATGCAGTGCTCAAGGAGAAGATCGCGCATC
CACTGACCCGGCCTGTGGGGCGTCCGTCGCTGACCAAGGTCAAGCGCATCTACGAGGACATCGAGTATCAGGCGCAAAGCTGGGATAAGCCACGCCGGGT
GATCGCCAAGATCGAATGGCATCCGGGCGAGCTGTTCCCAAAAGTCGGCTTCATCGTCACCAATATGCCGATGGACCCGGACTGGGTGGTGCGCTTCTAC
AACCAGCGTGGCACCGCCGAACAGCACATCAAGGAAGGCAAATACGCCTTCCGCTGGACGCGGCTGTCATGCAAGCGGTTTCGTGACAATGAGGTCCGGC
TGCAACTGCACGCGTTGGCCTACAACCTGGCAACGTTCCTGCGCTGCATCGAGCTCCCAGCGGCCATGGCCAACTGGTCGCTGACATCCCTCCAGCTCAA
GCTGATCAAGATGGGGGCCCGCGTCGTGCGTCACGCCCGCGCCATCACCTTCCAGCTTGCCGAGGTGGCGGTCACAGGCCCCATGGTCAGGGCCATCTTC
ACTGTGATCCACCACCTTCGAGCACCTCCGTCATGTGCGTGACAGCGATCCTGACAGAAACTGAACGAAAGCGGCAGGACAGTTCTGTCCACCGCGCTGA
AGAACGGCGATGCTGGGCCAGAATGATGCGAGTTTGCGGCCCCACCTGCCCGCATTCGAGCGTTCTGGCGCACGCAAACGCCGCTCAGGGCCCAAAACGC
TTGATTGGCAAGCGAATTTAGGTGATATTGGTGTCAAATGGCATGCCACTTGGGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1365 bp | 454 aa | 78 | 1442 | + | No |
Chemistry : DDE
ORF sequence :
MRIMDHPEGARETGYGRLGFDRRVRLEFRGTQLSSDGGLLVMRELDDALGLSNLASGALNDTRRGKNRVHRLDGLFRQSVYGRLAGYEDVNDADRLAFDP
VMRQVVGGRAVDAQAASASQMGRFETETLALPENRAALADLNGTWIDRFHDRNGLKYITLDMDSSVSPTHGDQEGTAWNGHFDCTCYHPNFLFNQFGMLE
RCALRNGNVHSADGWRDVLDPVIARYAGRKLGGRFFRADAAYAMPAIYERLEEAGYFYAIRLPTNAVLKEKIAHPLTRPVGRPSLTKVKRIYEDIEYQAQ
SWDKPRRVIAKIEWHPGELFPKVGFIVTNMPMDPDWVVRFYNQRGTAEQHIKEGKYAFRWTRLSCKRFRDNEVRLQLHALAYNLATFLRCIELPAAMANW
SLTSLQLKLIKMGARVVRHARAITFQLAEVAVTGPMVRAIFTVIHHLRAPPSCA
VMRQVVGGRAVDAQAASASQMGRFETETLALPENRAALADLNGTWIDRFHDRNGLKYITLDMDSSVSPTHGDQEGTAWNGHFDCTCYHPNFLFNQFGMLE
RCALRNGNVHSADGWRDVLDPVIARYAGRKLGGRFFRADAAYAMPAIYERLEEAGYFYAIRLPTNAVLKEKIAHPLTRPVGRPSLTKVKRIYEDIEYQAQ
SWDKPRRVIAKIEWHPGELFPKVGFIVTNMPMDPDWVVRFYNQRGTAEQHIKEGKYAFRWTRLSCKRFRDNEVRLQLHALAYNLATFLRCIELPAAMANW
SLTSLQLKLIKMGARVVRHARAITFQLAEVAVTGPMVRAIFTVIHHLRAPPSCA
Blast result :
Comments
ISOan2 is 92% aa similar to ISPme1.
References
1] ISfinder annotation (2009)
2] Brinkhoff,T., Wawrik,B., Simon,M., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2008) Direct submission GenBank.
2] Brinkhoff,T., Wawrik,B., Simon,M., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2008) Direct submission GenBank.