ISMasp7
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008576 | ND | Magnetococcus sp. | Magnetococcus sp. MC-1 |
DNA section
IS Length : 1661 bp
Ends
IR Length : 18/21
IRL : CCTGGATCCGTGAGTTTATTTTTAGTTTGCGTCCTGCAACCGTATGGCAA
IRR : CCTGAATCGGTGACTTTCTTTGGGGCGTGTTGACCGAACGCTTCTCCCAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TATTTGATAAAAA | TAAAT | AACAATTATCAATCAA | 5 |
GAAAACTCTACAGAGTCTTA | GTACATCTTAATCGGAATA T | 0 | |
GAAATTGTCTATAGATATTT | CTAATTCTAGTGGTGTGGGC | 0 |
DNA sequence
CCTGGATCCGTGAGTTTATTTTTAGTTTGCGTCCTGCAACCGTATGGCAAAGCAGATAAATTTGTTATTATATGAACTGTTTTTTGATTCACCCAGGGGG
TGAGATGAAGCGGTTCAAATTGGAGCAATCGGAGCAGGAGATCTACACGGCGACCAGTGGTCTGGCACTGGCAGGCGCTTGTCTGGACCGCTATGTGAAT
TTGGACAAGGAATTGAAGAAAGCACAGCCGTTGCGACACGGTATCAGCCATGCTGACATTGCTCGCAGCTACCTGGGTTTGTTGTTGCAGGGCAAGAGCG
ACTTTGAGGCGATTGCACAGTTCAGAGAAAATCGATTTTTCATGGAGGCACTTGGTATAGCCCATGTGCCATCCATTGCGAGAATGCGCCAGCGGCTGGA
TGAAGGGGCTGAATCGTGGTTGTCTGTAATAGAGTGCTGCACAGTTGATTTTTTGGTCAACGCCGAAGTTCCCGTGACGTGCTTGGTGACCGGGCATGTG
GCGCTGGATATGGATGTGTTTCCTATGGACAACTCCAGCACGAAGAAAGCGGGGGTTTCCCGCACCTACAAGGGACATGACGGATTCGCGCCCATTGGGG
CCTACCTCGGGGAAGAGGGCTGGTGTGTTGGGATGGAGTTTCGTGAGGGCAAACAGCACAGCCAGAAGGGATTTATTTCCTTTTTGACGCGTGTGTTGCC
CCAAGCCCGCCGCTTGAGCGCCAGTCACCGTTTACTGGTCCGCCTGGATAGCGGGCACGATGCGCTGGAAACGCGTGTGGCGTTGGTAAACGAGGATACC
GATTATATTCTCAAATGGAATCCCCGAACCGCTGATATGACACCCTGGCTGGCCATGGCGGAAGAGGAAGAGTGCTGGGTTGAAACACGTCCTGGAAAGT
TTGTTTCCCGGTTCAGCGTCATTGAGGAGCAAAGCTACGAGGGCCAAAGCTATCAGTTCCGGCGCGTGATGCAGGTGACTGAACGCCGAATTGATCGTCA
CGGACAAGGCTTGCTGGTTCCCGATGTGGAAGTTGAGGGCTGGTGGACATCGCTGGACTTGGTGGAAGAGGATGTCATTGCCCTTTACAAGGCACACGGG
ACATCAGAGCAATTTCACAGCGAGTTCAAGACAGACCTGGATTTGGAGCGGCTTCCGTCGGGCAAGTTTGCCACCAACGCCCTGGTTATGGGAATGGCGG
CATTTGCCTACAATATCCTGCGGTGGATCGGACTTTTGGGTCTGATGGGCAAAGATGGGCCAGTGCGGCACCCAGCTAAGCGTCGGCGTTTGAAGACGGT
TATCCAAGAGATGATCTATCTGGCCGCTCGCTTGGTCAGAAGCGGAAGGCGGCTACGATTGCGCTTTGGACTGAATTGCCCTGCATTCGACGCATTCGAA
CGGGTGTATGAGCGATTTGCTCCTGGAAAGCTGTTGGTTGGATGATCACAGAGCACAGAAATGGCGGCGTGAATGCACGCTAATCCGGGTATTTGCGCCT
TGATATTGAAAAATGGGGGCGTTCGGGGTAAACTGAGACAGCATCTGGCCACATATTGCCGGGAAACAGTGGTCTGACCATATTCTGAGGGCAAAAACAG
GGGTTGATGTGTTGGGAGAAGCGTTCGGTCAACACGCCCCAAAGAAAGTCACCGATTCAGG
TGAGATGAAGCGGTTCAAATTGGAGCAATCGGAGCAGGAGATCTACACGGCGACCAGTGGTCTGGCACTGGCAGGCGCTTGTCTGGACCGCTATGTGAAT
TTGGACAAGGAATTGAAGAAAGCACAGCCGTTGCGACACGGTATCAGCCATGCTGACATTGCTCGCAGCTACCTGGGTTTGTTGTTGCAGGGCAAGAGCG
ACTTTGAGGCGATTGCACAGTTCAGAGAAAATCGATTTTTCATGGAGGCACTTGGTATAGCCCATGTGCCATCCATTGCGAGAATGCGCCAGCGGCTGGA
TGAAGGGGCTGAATCGTGGTTGTCTGTAATAGAGTGCTGCACAGTTGATTTTTTGGTCAACGCCGAAGTTCCCGTGACGTGCTTGGTGACCGGGCATGTG
GCGCTGGATATGGATGTGTTTCCTATGGACAACTCCAGCACGAAGAAAGCGGGGGTTTCCCGCACCTACAAGGGACATGACGGATTCGCGCCCATTGGGG
CCTACCTCGGGGAAGAGGGCTGGTGTGTTGGGATGGAGTTTCGTGAGGGCAAACAGCACAGCCAGAAGGGATTTATTTCCTTTTTGACGCGTGTGTTGCC
CCAAGCCCGCCGCTTGAGCGCCAGTCACCGTTTACTGGTCCGCCTGGATAGCGGGCACGATGCGCTGGAAACGCGTGTGGCGTTGGTAAACGAGGATACC
GATTATATTCTCAAATGGAATCCCCGAACCGCTGATATGACACCCTGGCTGGCCATGGCGGAAGAGGAAGAGTGCTGGGTTGAAACACGTCCTGGAAAGT
TTGTTTCCCGGTTCAGCGTCATTGAGGAGCAAAGCTACGAGGGCCAAAGCTATCAGTTCCGGCGCGTGATGCAGGTGACTGAACGCCGAATTGATCGTCA
CGGACAAGGCTTGCTGGTTCCCGATGTGGAAGTTGAGGGCTGGTGGACATCGCTGGACTTGGTGGAAGAGGATGTCATTGCCCTTTACAAGGCACACGGG
ACATCAGAGCAATTTCACAGCGAGTTCAAGACAGACCTGGATTTGGAGCGGCTTCCGTCGGGCAAGTTTGCCACCAACGCCCTGGTTATGGGAATGGCGG
CATTTGCCTACAATATCCTGCGGTGGATCGGACTTTTGGGTCTGATGGGCAAAGATGGGCCAGTGCGGCACCCAGCTAAGCGTCGGCGTTTGAAGACGGT
TATCCAAGAGATGATCTATCTGGCCGCTCGCTTGGTCAGAAGCGGAAGGCGGCTACGATTGCGCTTTGGACTGAATTGCCCTGCATTCGACGCATTCGAA
CGGGTGTATGAGCGATTTGCTCCTGGAAAGCTGTTGGTTGGATGATCACAGAGCACAGAAATGGCGGCGTGAATGCACGCTAATCCGGGTATTTGCGCCT
TGATATTGAAAAATGGGGGCGTTCGGGGTAAACTGAGACAGCATCTGGCCACATATTGCCGGGAAACAGTGGTCTGACCATATTCTGAGGGCAAAAACAG
GGGTTGATGTGTTGGGAGAAGCGTTCGGTCAACACGCCCCAAAGAAAGTCACCGATTCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1341 bp | 446 aa | 105 | 1445 | + | No |
Chemistry : DDE
ORF sequence :
MKRFKLEQSEQEIYTATSGLALAGACLDRYVNLDKELKKAQPLRHGISHADIARSYLGLLLQGKSDFEAIAQFRENRFFMEALGIAHVPSIARMRQRLDE
GAESWLSVIECCTVDFLVNAEVPVTCLVTGHVALDMDVFPMDNSSTKKAGVSRTYKGHDGFAPIGAYLGEEGWCVGMEFREGKQHSQKGFISFLTRVLPQ
ARRLSASHRLLVRLDSGHDALETRVALVNEDTDYILKWNPRTADMTPWLAMAEEEECWVETRPGKFVSRFSVIEEQSYEGQSYQFRRVMQVTERRIDRHG
QGLLVPDVEVEGWWTSLDLVEEDVIALYKAHGTSEQFHSEFKTDLDLERLPSGKFATNALVMGMAAFAYNILRWIGLLGLMGKDGPVRHPAKRRRLKTVI
QEMIYLAARLVRSGRRLRLRFGLNCPAFDAFERVYERFAPGKLLVG
GAESWLSVIECCTVDFLVNAEVPVTCLVTGHVALDMDVFPMDNSSTKKAGVSRTYKGHDGFAPIGAYLGEEGWCVGMEFREGKQHSQKGFISFLTRVLPQ
ARRLSASHRLLVRLDSGHDALETRVALVNEDTDYILKWNPRTADMTPWLAMAEEEECWVETRPGKFVSRFSVIEEQSYEGQSYQFRRVMQVTERRIDRHG
QGLLVPDVEVEGWWTSLDLVEEDVIALYKAHGTSEQFHSEFKTDLDLERLPSGKFATNALVMGMAAFAYNILRWIGLLGLMGKDGPVRHPAKRRRLKTVI
QEMIYLAARLVRSGRRLRLRFGLNCPAFDAFERVYERFAPGKLLVG
Blast result :
Comments
ISMasp7 is 61% aa similar to ISAzo40.
References
1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Goodwin,L.A., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N. and Richardson,P. (2006) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Goodwin,L.A., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N. and Richardson,P. (2006) Direct submission GenBank.