ISMsp1

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_002806 ND Microscilla sp.
Microscilla sp. PRE1 plasmid pSD15
DNA section
IS Length : 1741 bp

Ends


IR Length : 15/16

IRL : GAGGCTGTCTCAAAAGGGCAGTCTTTTTTTTTGATAAAAAGAAAGCCGAG
IRR : GAGGCCGTCTCAAAAGTAATTGAGTCGGTCTTTTTGTTTTAGAGAGATTC

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GAGGCTGTCTCAAAAGGGCAGTCTTTTTTTTTGATAAAAAGAAAGCCGAGATCTTAATTGATCTCGGCTTTTTTGTGACTAACTGATTAAATTAGTCGTG
TGGGTAATTCAAATTTAGTCTTTAAAGATTACACCCCATCACAAGTGATGCTACTTCCTCCATCCCTGGAGGAATTAATAGAAGAAAATCATCCAGTGCG
GGTGGTTAATGCTGTAATCGACCAAATCAGTGTGGAACCTTTATTGAAGCAGTATAAGCCTGGTGGTACTTCCGTTTACCACCCCAGGATGTTGCTAAAA
GTACTTGTTTACGGATATCTGACCAATATTTATTCGTCCAGAAAGCTTGAAGCAGCTTTAAAGGAAAACATCCACATGATGTGGCTTGCAGCCATGAATC
GTCCAGATCATAATACAATTGCCCGATTCAGAAGTGAGCGACTTAAAGATGCCTTGAGGCAAGTATTCGGTCAGGTTGTTGAGTTATTGGTTGAAGAGGG
ACTGGTAAGTATCAAAAACATCTACACCGATGGCACCAAAATAGAAGCCAACGCTAATAAATACACTTTTGTCTGGGGACGTGCTATCCAAACCAGCAGA
GAGCGCATAGCCAAGCAGCTAGATGAGCTTTGGGATTACACACAGAGGCTAGCAGAAGAGGAGTTATTCAGTGAAGAAAAGCCTGACTTTAAAGAGATAG
ACAAGGAAAAAGTCAGTCAGACTATAGAGAGGATAGACAAAGCACTGGAAGACAAGCCTGTCAGCAAGAAAGTCAAACAAAAGCTCAACTATGCTAAAAA
GAACTGGCCAGCTAAGCTAGAAGAGTATGCTGAAAAGGAAGCCATCATGGGTGAAAACAGGAATAGCTACTCCAAAACAGACCATGGAGCCACTTTCATG
AGAATGAAAGAGGATCACATGCTCAATGGCCAGCTCAAGCCAGGCTATAACCTTCAAATCAGCACCTCAGACCAGTTCATTGTCAACTACAGTATCCACC
AAAACCCTACAGATACACTTACTCTCAAACCACACCTTCAGCAGTATCAAAACCTTTACAAAACCAACCCTGAATCGATCTGTGCAGATGCAGGATATGG
CAGTGAAGAAAACTACGACTATCTGGAAGAACAAACAATAGAATCCTATGTGAAGTACAATTACTTCCACAAGGAGCAGTCAAAGAAATGGAAGGAAAAC
CCCTTCAGAACAGACAATCTGCATTATAACGAAGAGCAGGACAAGCTATACTGTCCAATGGGGCAACCGATGGATCGGATAGCTGATCGAAAATCAGAAT
CATCGGCAGGTTATAAACAAACTTATGCACGATATCAGGCTAAAAACTGTAATGGATGCTCCTTGAGAGGCTCTTGTCATAAGAGTAAAGGCAATCGTAT
TGTAGAAATCAATCATAATCTGCGGCGACATAAGCAGAAAGTGAGGCAAAACTTATTCTCTGAACAAGGATTAGCTCATAGAGCCAAAAGACCTTGGGAT
GTAGAGGCTGTCTTTGCAGCCATCAAACACAATCGAGGCTTCCGAAGGTTTATGCTTAAAGGCATCGATAAGGTAGAAATAGAGGTAGGATTACTCGCTA
TTGCTCAAAATCTGGCCAAGAAGGCCGCTTGAAACTAGCAAGTAATTGCTCTGCACTAAAAATCTCATAATATCCTAAAGAATCCTCTCTTGAATCTCTC
TAAAACAAAAAGACCGACTCAATTACTTTTGAGACGGCCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1533 bp510 aa1001632+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGNSNLVFKDYTPSQVMLLPPSLEELIEENHPVRVVNAVIDQISVEPLLKQYKPGGTSVYHPRMLLKVLVYGYLTNIYSSRKLEAALKENIHMMWLAAMN
RPDHNTIARFRSERLKDALRQVFGQVVELLVEEGLVSIKNIYTDGTKIEANANKYTFVWGRAIQTSRERIAKQLDELWDYTQRLAEEELFSEEKPDFKEI
DKEKVSQTIERIDKALEDKPVSKKVKQKLNYAKKNWPAKLEEYAEKEAIMGENRNSYSKTDHGATFMRMKEDHMLNGQLKPGYNLQISTSDQFIVNYSIH
QNPTDTLTLKPHLQQYQNLYKTNPESICADAGYGSEENYDYLEEQTIESYVKYNYFHKEQSKKWKENPFRTDNLHYNEEQDKLYCPMGQPMDRIADRKSE
SSAGYKQTYARYQAKNCNGCSLRGSCHKSKGNRIVEINHNLRRHKQKVRQNLFSEQGLAHRAKRPWDVEAVFAAIKHNRGFRRFMLKGIDKVEIEVGLLA
IAQNLAKKAA

 

Blast result :
Comments
ISMsp1 is 57% aa similar to IS660. Thre are one full and one partial copy of ISMsp1 in Microscilla sp. PRE1 plasmid pSD15 at coordinates : 85144-86884 and 54124(360)-52746(1741).
References
1] ISfinder annotation (2005)
2] Zhong,Z., Toukdarian,A., Helinski,D., Knauf,V., Sykes,S., Wilkinson,J.E., O'Bryne,C., Shea,T., DeLoughery,C. and Caspi,R. (2001) Appl. Environ. Microbiol. 67 (12), 5771-5779