ISMsp1
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_002806 | ND | Microscilla sp. | Microscilla sp. PRE1 plasmid pSD15 |
DNA section
IS Length : 1741 bp
Ends
IR Length : 15/16
IRL : GAGGCTGTCTCAAAAGGGCAGTCTTTTTTTTTGATAAAAAGAAAGCCGAG
IRR : GAGGCCGTCTCAAAAGTAATTGAGTCGGTCTTTTTGTTTTAGAGAGATTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GAGGCTGTCTCAAAAGGGCAGTCTTTTTTTTTGATAAAAAGAAAGCCGAGATCTTAATTGATCTCGGCTTTTTTGTGACTAACTGATTAAATTAGTCGTG
TGGGTAATTCAAATTTAGTCTTTAAAGATTACACCCCATCACAAGTGATGCTACTTCCTCCATCCCTGGAGGAATTAATAGAAGAAAATCATCCAGTGCG
GGTGGTTAATGCTGTAATCGACCAAATCAGTGTGGAACCTTTATTGAAGCAGTATAAGCCTGGTGGTACTTCCGTTTACCACCCCAGGATGTTGCTAAAA
GTACTTGTTTACGGATATCTGACCAATATTTATTCGTCCAGAAAGCTTGAAGCAGCTTTAAAGGAAAACATCCACATGATGTGGCTTGCAGCCATGAATC
GTCCAGATCATAATACAATTGCCCGATTCAGAAGTGAGCGACTTAAAGATGCCTTGAGGCAAGTATTCGGTCAGGTTGTTGAGTTATTGGTTGAAGAGGG
ACTGGTAAGTATCAAAAACATCTACACCGATGGCACCAAAATAGAAGCCAACGCTAATAAATACACTTTTGTCTGGGGACGTGCTATCCAAACCAGCAGA
GAGCGCATAGCCAAGCAGCTAGATGAGCTTTGGGATTACACACAGAGGCTAGCAGAAGAGGAGTTATTCAGTGAAGAAAAGCCTGACTTTAAAGAGATAG
ACAAGGAAAAAGTCAGTCAGACTATAGAGAGGATAGACAAAGCACTGGAAGACAAGCCTGTCAGCAAGAAAGTCAAACAAAAGCTCAACTATGCTAAAAA
GAACTGGCCAGCTAAGCTAGAAGAGTATGCTGAAAAGGAAGCCATCATGGGTGAAAACAGGAATAGCTACTCCAAAACAGACCATGGAGCCACTTTCATG
AGAATGAAAGAGGATCACATGCTCAATGGCCAGCTCAAGCCAGGCTATAACCTTCAAATCAGCACCTCAGACCAGTTCATTGTCAACTACAGTATCCACC
AAAACCCTACAGATACACTTACTCTCAAACCACACCTTCAGCAGTATCAAAACCTTTACAAAACCAACCCTGAATCGATCTGTGCAGATGCAGGATATGG
CAGTGAAGAAAACTACGACTATCTGGAAGAACAAACAATAGAATCCTATGTGAAGTACAATTACTTCCACAAGGAGCAGTCAAAGAAATGGAAGGAAAAC
CCCTTCAGAACAGACAATCTGCATTATAACGAAGAGCAGGACAAGCTATACTGTCCAATGGGGCAACCGATGGATCGGATAGCTGATCGAAAATCAGAAT
CATCGGCAGGTTATAAACAAACTTATGCACGATATCAGGCTAAAAACTGTAATGGATGCTCCTTGAGAGGCTCTTGTCATAAGAGTAAAGGCAATCGTAT
TGTAGAAATCAATCATAATCTGCGGCGACATAAGCAGAAAGTGAGGCAAAACTTATTCTCTGAACAAGGATTAGCTCATAGAGCCAAAAGACCTTGGGAT
GTAGAGGCTGTCTTTGCAGCCATCAAACACAATCGAGGCTTCCGAAGGTTTATGCTTAAAGGCATCGATAAGGTAGAAATAGAGGTAGGATTACTCGCTA
TTGCTCAAAATCTGGCCAAGAAGGCCGCTTGAAACTAGCAAGTAATTGCTCTGCACTAAAAATCTCATAATATCCTAAAGAATCCTCTCTTGAATCTCTC
TAAAACAAAAAGACCGACTCAATTACTTTTGAGACGGCCTC
TGGGTAATTCAAATTTAGTCTTTAAAGATTACACCCCATCACAAGTGATGCTACTTCCTCCATCCCTGGAGGAATTAATAGAAGAAAATCATCCAGTGCG
GGTGGTTAATGCTGTAATCGACCAAATCAGTGTGGAACCTTTATTGAAGCAGTATAAGCCTGGTGGTACTTCCGTTTACCACCCCAGGATGTTGCTAAAA
GTACTTGTTTACGGATATCTGACCAATATTTATTCGTCCAGAAAGCTTGAAGCAGCTTTAAAGGAAAACATCCACATGATGTGGCTTGCAGCCATGAATC
GTCCAGATCATAATACAATTGCCCGATTCAGAAGTGAGCGACTTAAAGATGCCTTGAGGCAAGTATTCGGTCAGGTTGTTGAGTTATTGGTTGAAGAGGG
ACTGGTAAGTATCAAAAACATCTACACCGATGGCACCAAAATAGAAGCCAACGCTAATAAATACACTTTTGTCTGGGGACGTGCTATCCAAACCAGCAGA
GAGCGCATAGCCAAGCAGCTAGATGAGCTTTGGGATTACACACAGAGGCTAGCAGAAGAGGAGTTATTCAGTGAAGAAAAGCCTGACTTTAAAGAGATAG
ACAAGGAAAAAGTCAGTCAGACTATAGAGAGGATAGACAAAGCACTGGAAGACAAGCCTGTCAGCAAGAAAGTCAAACAAAAGCTCAACTATGCTAAAAA
GAACTGGCCAGCTAAGCTAGAAGAGTATGCTGAAAAGGAAGCCATCATGGGTGAAAACAGGAATAGCTACTCCAAAACAGACCATGGAGCCACTTTCATG
AGAATGAAAGAGGATCACATGCTCAATGGCCAGCTCAAGCCAGGCTATAACCTTCAAATCAGCACCTCAGACCAGTTCATTGTCAACTACAGTATCCACC
AAAACCCTACAGATACACTTACTCTCAAACCACACCTTCAGCAGTATCAAAACCTTTACAAAACCAACCCTGAATCGATCTGTGCAGATGCAGGATATGG
CAGTGAAGAAAACTACGACTATCTGGAAGAACAAACAATAGAATCCTATGTGAAGTACAATTACTTCCACAAGGAGCAGTCAAAGAAATGGAAGGAAAAC
CCCTTCAGAACAGACAATCTGCATTATAACGAAGAGCAGGACAAGCTATACTGTCCAATGGGGCAACCGATGGATCGGATAGCTGATCGAAAATCAGAAT
CATCGGCAGGTTATAAACAAACTTATGCACGATATCAGGCTAAAAACTGTAATGGATGCTCCTTGAGAGGCTCTTGTCATAAGAGTAAAGGCAATCGTAT
TGTAGAAATCAATCATAATCTGCGGCGACATAAGCAGAAAGTGAGGCAAAACTTATTCTCTGAACAAGGATTAGCTCATAGAGCCAAAAGACCTTGGGAT
GTAGAGGCTGTCTTTGCAGCCATCAAACACAATCGAGGCTTCCGAAGGTTTATGCTTAAAGGCATCGATAAGGTAGAAATAGAGGTAGGATTACTCGCTA
TTGCTCAAAATCTGGCCAAGAAGGCCGCTTGAAACTAGCAAGTAATTGCTCTGCACTAAAAATCTCATAATATCCTAAAGAATCCTCTCTTGAATCTCTC
TAAAACAAAAAGACCGACTCAATTACTTTTGAGACGGCCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1533 bp | 510 aa | 100 | 1632 | + | No |
Chemistry : DDE
ORF sequence :
MGNSNLVFKDYTPSQVMLLPPSLEELIEENHPVRVVNAVIDQISVEPLLKQYKPGGTSVYHPRMLLKVLVYGYLTNIYSSRKLEAALKENIHMMWLAAMN
RPDHNTIARFRSERLKDALRQVFGQVVELLVEEGLVSIKNIYTDGTKIEANANKYTFVWGRAIQTSRERIAKQLDELWDYTQRLAEEELFSEEKPDFKEI
DKEKVSQTIERIDKALEDKPVSKKVKQKLNYAKKNWPAKLEEYAEKEAIMGENRNSYSKTDHGATFMRMKEDHMLNGQLKPGYNLQISTSDQFIVNYSIH
QNPTDTLTLKPHLQQYQNLYKTNPESICADAGYGSEENYDYLEEQTIESYVKYNYFHKEQSKKWKENPFRTDNLHYNEEQDKLYCPMGQPMDRIADRKSE
SSAGYKQTYARYQAKNCNGCSLRGSCHKSKGNRIVEINHNLRRHKQKVRQNLFSEQGLAHRAKRPWDVEAVFAAIKHNRGFRRFMLKGIDKVEIEVGLLA
IAQNLAKKAA
RPDHNTIARFRSERLKDALRQVFGQVVELLVEEGLVSIKNIYTDGTKIEANANKYTFVWGRAIQTSRERIAKQLDELWDYTQRLAEEELFSEEKPDFKEI
DKEKVSQTIERIDKALEDKPVSKKVKQKLNYAKKNWPAKLEEYAEKEAIMGENRNSYSKTDHGATFMRMKEDHMLNGQLKPGYNLQISTSDQFIVNYSIH
QNPTDTLTLKPHLQQYQNLYKTNPESICADAGYGSEENYDYLEEQTIESYVKYNYFHKEQSKKWKENPFRTDNLHYNEEQDKLYCPMGQPMDRIADRKSE
SSAGYKQTYARYQAKNCNGCSLRGSCHKSKGNRIVEINHNLRRHKQKVRQNLFSEQGLAHRAKRPWDVEAVFAAIKHNRGFRRFMLKGIDKVEIEVGLLA
IAQNLAKKAA
Blast result :
Comments
ISMsp1 is 57% aa similar to IS660. Thre are one full and one partial copy of ISMsp1 in Microscilla sp. PRE1 plasmid pSD15 at coordinates : 85144-86884 and 54124(360)-52746(1741).
References
1] ISfinder annotation (2005)
2] Zhong,Z., Toukdarian,A., Helinski,D., Knauf,V., Sykes,S., Wilkinson,J.E., O'Bryne,C., Shea,T., DeLoughery,C. and Caspi,R. (2001) Appl. Environ. Microbiol. 67 (12), 5771-5779
2] Zhong,Z., Toukdarian,A., Helinski,D., Knauf,V., Sykes,S., Wilkinson,J.E., O'Bryne,C., Shea,T., DeLoughery,C. and Caspi,R. (2001) Appl. Environ. Microbiol. 67 (12), 5771-5779