ISMac2
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003552 | ND | Methanosarcina acetivorans | Methanosarcina acetivorans C2A |
DNA section
IS Length : 1707 bp
Ends
IR Length : 35/41
IRL : CAGGCTGTCTCAAAACTATGCTTGATTGTACATTTGGGTAAGAATTATTA
IRR : CAGGCTGTCTCAAAACCATTCCTTATTCTACAATTGGGTAATATCCCATC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TATTTTTTTC | ATAA | TCAAGGTTTT | 4 |
DNA sequence
CAGGCTGTCTCAAAACTATGCTTGATTGTACATTTGGGTAAGAATTATTAGGAACATTTATCTTTTTAAATATATATCTTTATATTAAAAATATATTGTT
TGAGAAAATTACCCCCAGTGTCTCACCATGTTCAAAAGGTATGATCAAAAGCAGCAATTTTTACTTCCATTTAACCTGGAAGAGTTTGTTCCTGAAAACC
ATATTGCCAGAGTGCTAAACGACATCATAGACGTCATCGATATTAGTGCTATTGAATCCACTTATTCTGAGGAAGGCTGCCCTGCCTATCATCCACGACT
TCTTTTAAAAATCTTACTTTATGGATACCTGATAAACATCAGAAGCTCACGTAAGATAGAGCAAATGACCCAAACTGATACTGCTTTTATGTACCTTGCA
GCCATGCAAAAACCTGATTTCCACACAATATGTCGCTTCCGTTCAACTCATCTTGGCCCCATTAAAGAAATCTTTTCTCAGGTTGTCACGTTTTGCAAAG
AAATGGATCTGATTGGTTCCAGTATCTCAATTGACGGAACAAAGGTTAAGGCAAACGCTTCTCCAAGACAAAGCAAGAGCTCGGATGCTCTCGAAAAAGA
AATTGACAAGATACTCAAAGAGAGCATTGAAACCGATAAACATGAAGATGAAATTTACGGTGACTCGACACCTTACCAGATTCCAGAAGAACTGGTTGAC
AAGAAGAAAAGATTAGAGAAAATTAAGGCTGCTAAGAAAAAGCTCGATGAAGAAAAGCTGAAAAAAGTAAACATTACAGACAACGATGCTCGAATTATGA
AGCATAAAGATGGAAGCAAGAAACCTTCCTATAATTGTCAGGTTGCTGTTGATGAAAAGGAACAAATAATCGTTGCAGCAGACGTGGTCAACGAAGAAAA
CGACTTGCATCAGATGGAACCAATGATACAGAATGTAAAAAATACACTGGGGGATAAACCAACAATAGTGCTTGCAGATGCAGGTTATTTCTCATACGAT
AATGTAGAATTTTTACTCAATGAAGAAATTGATGCTTATATTCCCGACAACTTCTATAAAGCTGAAAAAGAAGGAAAAACCAGGAAGTTCAGGAAAGCTC
TTTTTAAATACGATGAAGAAAAGGACTGCTATTATTGTCCTGCTGCATTTGAAATTCCCTTTATAAGAATACAAAAGAGGAAAGGTGAACCTGATTTAAG
ATATTATGTATGTAGCTATTGTTCTAAGTGTGTGTTGAAAAATGCATGTACTATGAGTGGAAAAAGGACAATAACAAGAGATCCTCGAGAACATTTAATG
GAGGATATGAGGGCTAAACTGAATACAGAAAAGGGTACGGAAAAGTATCAGAAAAGAATGTCTACCGTAGAACCTGTGTTTGGTCAGATGAAACAGGATA
GAGGATTCAGGGAATTTCTGTTGAGAGGGAAAGGAAAGACAAAAATTGAATTTGTTATGATGTGTACCGTACACAACATAAGGAAAATAGCGGATTTCAT
GAAGAGGGAAGGTAAAAACCTGAAAGAAATTCTGAATATGATTACTAGAAGAGGAAATGAATGTGGGAATAGATGGGGAAGTGTAGCAGGAATGGCGCAT
AAGTTATGGTGATCAGTGAAAATTAATCTATTCTTGTCGAAATGAAATAAAAATTGAGATGGGATATTACCCAATTGTAGAATAAGGAATGGTTTTGAGA
CAGCCTG
TGAGAAAATTACCCCCAGTGTCTCACCATGTTCAAAAGGTATGATCAAAAGCAGCAATTTTTACTTCCATTTAACCTGGAAGAGTTTGTTCCTGAAAACC
ATATTGCCAGAGTGCTAAACGACATCATAGACGTCATCGATATTAGTGCTATTGAATCCACTTATTCTGAGGAAGGCTGCCCTGCCTATCATCCACGACT
TCTTTTAAAAATCTTACTTTATGGATACCTGATAAACATCAGAAGCTCACGTAAGATAGAGCAAATGACCCAAACTGATACTGCTTTTATGTACCTTGCA
GCCATGCAAAAACCTGATTTCCACACAATATGTCGCTTCCGTTCAACTCATCTTGGCCCCATTAAAGAAATCTTTTCTCAGGTTGTCACGTTTTGCAAAG
AAATGGATCTGATTGGTTCCAGTATCTCAATTGACGGAACAAAGGTTAAGGCAAACGCTTCTCCAAGACAAAGCAAGAGCTCGGATGCTCTCGAAAAAGA
AATTGACAAGATACTCAAAGAGAGCATTGAAACCGATAAACATGAAGATGAAATTTACGGTGACTCGACACCTTACCAGATTCCAGAAGAACTGGTTGAC
AAGAAGAAAAGATTAGAGAAAATTAAGGCTGCTAAGAAAAAGCTCGATGAAGAAAAGCTGAAAAAAGTAAACATTACAGACAACGATGCTCGAATTATGA
AGCATAAAGATGGAAGCAAGAAACCTTCCTATAATTGTCAGGTTGCTGTTGATGAAAAGGAACAAATAATCGTTGCAGCAGACGTGGTCAACGAAGAAAA
CGACTTGCATCAGATGGAACCAATGATACAGAATGTAAAAAATACACTGGGGGATAAACCAACAATAGTGCTTGCAGATGCAGGTTATTTCTCATACGAT
AATGTAGAATTTTTACTCAATGAAGAAATTGATGCTTATATTCCCGACAACTTCTATAAAGCTGAAAAAGAAGGAAAAACCAGGAAGTTCAGGAAAGCTC
TTTTTAAATACGATGAAGAAAAGGACTGCTATTATTGTCCTGCTGCATTTGAAATTCCCTTTATAAGAATACAAAAGAGGAAAGGTGAACCTGATTTAAG
ATATTATGTATGTAGCTATTGTTCTAAGTGTGTGTTGAAAAATGCATGTACTATGAGTGGAAAAAGGACAATAACAAGAGATCCTCGAGAACATTTAATG
GAGGATATGAGGGCTAAACTGAATACAGAAAAGGGTACGGAAAAGTATCAGAAAAGAATGTCTACCGTAGAACCTGTGTTTGGTCAGATGAAACAGGATA
GAGGATTCAGGGAATTTCTGTTGAGAGGGAAAGGAAAGACAAAAATTGAATTTGTTATGATGTGTACCGTACACAACATAAGGAAAATAGCGGATTTCAT
GAAGAGGGAAGGTAAAAACCTGAAAGAAATTCTGAATATGATTACTAGAAGAGGAAATGAATGTGGGAATAGATGGGGAAGTGTAGCAGGAATGGCGCAT
AAGTTATGGTGATCAGTGAAAATTAATCTATTCTTGTCGAAATGAAATAAAAATTGAGATGGGATATTACCCAATTGTAGAATAAGGAATGGTTTTGAGA
CAGCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1485 bp | 494 aa | 128 | 1612 | + | No |
Chemistry : DDE
ORF sequence :
MFKRYDQKQQFLLPFNLEEFVPENHIARVLNDIIDVIDISAIESTYSEEGCPAYHPRLLLKILLYGYLINIRSSRKIEQMTQTDTAFMYLAAMQKPDFHT
ICRFRSTHLGPIKEIFSQVVTFCKEMDLIGSSISIDGTKVKANASPRQSKSSDALEKEIDKILKESIETDKHEDEIYGDSTPYQIPEELVDKKKRLEKIK
AAKKKLDEEKLKKVNITDNDARIMKHKDGSKKPSYNCQVAVDEKEQIIVAADVVNEENDLHQMEPMIQNVKNTLGDKPTIVLADAGYFSYDNVEFLLNEE
IDAYIPDNFYKAEKEGKTRKFRKALFKYDEEKDCYYCPAAFEIPFIRIQKRKGEPDLRYYVCSYCSKCVLKNACTMSGKRTITRDPREHLMEDMRAKLNT
EKGTEKYQKRMSTVEPVFGQMKQDRGFREFLLRGKGKTKIEFVMMCTVHNIRKIADFMKREGKNLKEILNMITRRGNECGNRWGSVAGMAHKLW
ICRFRSTHLGPIKEIFSQVVTFCKEMDLIGSSISIDGTKVKANASPRQSKSSDALEKEIDKILKESIETDKHEDEIYGDSTPYQIPEELVDKKKRLEKIK
AAKKKLDEEKLKKVNITDNDARIMKHKDGSKKPSYNCQVAVDEKEQIIVAADVVNEENDLHQMEPMIQNVKNTLGDKPTIVLADAGYFSYDNVEFLLNEE
IDAYIPDNFYKAEKEGKTRKFRKALFKYDEEKDCYYCPAAFEIPFIRIQKRKGEPDLRYYVCSYCSKCVLKNACTMSGKRTITRDPREHLMEDMRAKLNT
EKGTEKYQKRMSTVEPVFGQMKQDRGFREFLLRGKGKTKIEFVMMCTVHNIRKIADFMKREGKNLKEILNMITRRGNECGNRWGSVAGMAHKLW
Blast result :
Comments
ISMac2 is 94% aa similar to ISMac1. There is only one copy in Methanosarcina acetivorans genome.
References
1] ISfinder annotation (2005)
2] Galagan,J.E., Nusbaum,C., Roy,A., Endrizzi,M.G., Macdonald,P.,
FitzHugh,W., Calvo,S., Engels,R., Smirnov,S., Atnoor,D., Brown,A., Allen,N., Naylor,J., Stange-Thomann,N., DeArellano,K., Johnson,R., Linton,L., McEwan,P., McKernan,K., Talamas,J., Tirrell,A., Ye,W., Zimmer,A., Barber,R.D., Cann,I., Graham,D.E., Grahame,D.A., Guss,A., Hedderich,R., Ingram-Smith,C., Kuettner,C.H., Krzycki,J.A., Leigh,J.A., Li,W., Liu,J., Mukhopadhyay,B., Reeve,J.N., Smith,K., Springer,T.A., Umayam,L.A., White,O., White,R.H., de Macario,E.C., Ferry,J.G., Jarrell,K.F., Jing,H., Macario,A.J.L., Paulsen,I., Pritchett,M., Sowers,K.R., Swanson,R.V., Zinder,S.H., Lander,E., Metcalf,W.W. and Birren,B. (2002) Genome Res. 12 (4), 532-542
2] Galagan,J.E., Nusbaum,C., Roy,A., Endrizzi,M.G., Macdonald,P.,
FitzHugh,W., Calvo,S., Engels,R., Smirnov,S., Atnoor,D., Brown,A., Allen,N., Naylor,J., Stange-Thomann,N., DeArellano,K., Johnson,R., Linton,L., McEwan,P., McKernan,K., Talamas,J., Tirrell,A., Ye,W., Zimmer,A., Barber,R.D., Cann,I., Graham,D.E., Grahame,D.A., Guss,A., Hedderich,R., Ingram-Smith,C., Kuettner,C.H., Krzycki,J.A., Leigh,J.A., Li,W., Liu,J., Mukhopadhyay,B., Reeve,J.N., Smith,K., Springer,T.A., Umayam,L.A., White,O., White,R.H., de Macario,E.C., Ferry,J.G., Jarrell,K.F., Jing,H., Macario,A.J.L., Paulsen,I., Pritchett,M., Sowers,K.R., Swanson,R.V., Zinder,S.H., Lander,E., Metcalf,W.W. and Birren,B. (2002) Genome Res. 12 (4), 532-542