ISMma2

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003901 ND Methanosarcina mazei
Methanosarcina mazei Go1
DNA section
IS Length : 1669 bp

Ends


IR Length : 30/39

IRL : CAGGTTGTCTCAAAACTATACCTGATCGCACATTTGGGTCAGAAACCCGT
IRR : CAGGTTGTCTCAAAACCATTTTTAATTCTACAATTGGGTAATGCCCTTTC

Insertion site


Left flankDirect repeatRight flankDR Length
AAAACTGATCTTAATACTCACTCTT5

DNA sequence

CAGGTTGTCTCAAAACTATACCTGATCGCACATTTGGGTCAGAAACCCGTAATCTTTATCTTTTTTACAAAACTAAATTCCAGTGTTTCCCATGTTTAGA
AAATACGATCAAAAGCAGCAGTTTTTACTTCCATTAAACCTGGAAGATTTTGTTCCTGAAAATCATCTCGCCCGAGTACTAAACGACATCGTAGATGTCG
TTGATATCACTGCTATTGAATCCACTTATTCTAAGGAAGGCTGCCCAGCCTATCATCCAATAATTCTTTTAAAAATATTACTTTATGGTTATCTTATAGG
CATTAGAAGTTCACGTAAACTGCAACAAATGACTCAAACTGATACTGCATTTATGTATCTGGCAGCCATGCAAAAACCTGATTTTCATACTATTTGTCGA
TTCCGTTCAACTCACCTTGGCCCTATTAAAGAGATATTTTCCCAGGTTGTCACTTTTTGTAAAGAAATGGATATGATTGGTTCCAGTATCTCGATTGACG
GAACAAAGATCAAGGCAAATGCTTCATCAAGACAAAGCAAGAATTCGGATTCTCTCGAAAAAGAAATAGATCGGATACTAAAAGAGAGTATTGAGACAGA
TAAGTATGAAGATGAAATTTATGGTGACTCAACACCATATCAGATTCCAGAAGAGCTAGTTGACAAGAAGAAAAGATTAGAGAAGATTAAAAACGCTAAG
AAGAAGCTTGATGAAGAAAAGCTGAAAAAAGTAAACATCACAGACAACGATGCTCGAATTATGAAATATAAAGATGGGAGCAAGAAACCTTCATACAACT
GTCAGGTTGCTGTTGACGAAAAGGAACAAATTATCGTTGCAGCAGACGTTGTCAACGAAGAAAACGACCTGCATCAAGTAGAACCAATGATACAGAATGT
AAAAAATACACTGGGATATAAACCAACAATCGTGCTTGCAGATGCAGGTTATTTTTCATATGAGAATCTGGAATTTTTACAGAAAGAAGGAATTGATGCT
TATATTCCTGACAACTTCTATAAAGCTGAAAAAGAAGGAAAAACCAGGAAGTTCAGAAAGTCTCTTTTTAAATACGACGAAGAAAAAGACTGCTATTATT
GTCCTGCTGCTTTTGAAATTCCCTTTTCAAGAATACAAAAGAGGAAAGGTGAACCTGATTTAAGGTATTATGTCTGTAGTTATTGTTCTCAGTGTGTGTT
GAAAAATGCATGTACTGAGAGTGGAAAAAGGACGATTACAAGAGATCCTCGAGAACATTTAATGGAGGATATGAGGGCTAAACTGAACACAGAAAAAGGT
ACGGAAAAGTATCAGAAAAGAATGTCTACCGTAGAACCTGTGTTTGGTCAAATGAAACAGGATAGAGGGTTTAGGGAATTTCTGTTGAGAGGAATAAGGA
AAACAGGAATTGAATTTGTTATGATATGTACCGTACACAATATAAAGAAAATAGCAGATTTCATAAAAAGACAAGGGAAAAACCTGAAAGAAATGCTGAA
AATGATAGTTGGAGGAGAAAGTAAAGGATGGAATAAGAGGAGAATTCAAGCAAGAATGACAAATACGCTATGTTGAGCTATGAAAATTTACTTTTTCTTG
TTGAAATGAAATAAAAATTGAAAGGGCATTACCCAATTGTAGAATTAAAAATGGTTTTGAGACAACCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1485 bp494 aa921576+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFRKYDQKQQFLLPLNLEDFVPENHLARVLNDIVDVVDITAIESTYSKEGCPAYHPIILLKILLYGYLIGIRSSRKLQQMTQTDTAFMYLAAMQKPDFHT
ICRFRSTHLGPIKEIFSQVVTFCKEMDMIGSSISIDGTKIKANASSRQSKSSDSLEKEIDRILKESIETDKYEDEIYGDSTPYQIPEELVDKKKRLEKIK
NAKKKLDEEKLKKVNITDNDARIMKYKDGSKKPSYNCQVAVDEKEQIIVAADVVNEENDLHQVEPMIQNVKNTLGYKPTIVLADAGYFSYENLEFLQKEG
IDAYIPDNFYKAEKEGKTRKFRKSLFKYDEEKDCYYCPAAFEIPFSRIQKRKGEPDLRYYVCSYCSQCVLKNACTESGKRTITRDPREHLMEDMRAKLNT
EKGTEKYQKRMSTVEPVFGQMKQDRGFREFLLRGIRKTGIEFVMICTVHNIKKIADFIKRQGKNLKEMLKMIVGGESKGWNKRRIQARMTNTLC

 

Blast result :
Comments
ISMma2 is 97% aa similar to ISMac1. There are 3 copies in Methanosarcina mazei Go1 genome.
References
1] ISfinder annotation (2005)
2) Deppenmeier,U., Johann,A., Hartsch,T., Merkl,R., Schmitz,R.A., Martinez-Arias,R., Henne,A., Wiezer,A., Baumer,S., Jacobi,C., Bruggemann,H., Lienard,T., Christmann,A., Bomeke,M., Steckel,S., Bhattacharyya,A., Lykidis,A., Overbeek,R., Klenk,H.P., Gunsalus,R.P., Fritz,H.J. and Gottschalk,G.(2002) J. Mol. Microbiol. Biotechnol. 4 (4), 453-461