ISMex25
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
Y | Methylobacterium extorquens | Methylobacterium extorquens AM1 |
DNA section
IS Length : 887 bp
Ends
IR Length : 13/15
IRL : GGCCCTGTCGCAAACCCGTGGCGTTTACCCCGCGTTGACCATAGAGCCCG
IRR : GGGCCTGTCGCGAACTCAGTGTCAGGCCGCGGAAGGCTCTCTACCGTTCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGCTTCGTGA | CTTCGACACG | 0 | |
GCTTCGCCGA | CCTGCTCG | CGCCACTTCT | 8 |
CGTCGGGCCG | TCGGCGAC | AGCTTGCGGT | 8 |
AGCACGACGA | TTTCCTCG | TCGATCAGGA | 8 |
GGCAACGGGA | CGTTTTCT | TGCCACGGTC | 8 |
TTGACCCAGG | CGTGTTCC | ACCAGGCCGC | 8 |
ACTTCTCCCA | TATGAATT | TCGTGTAGTG | 8 |
GGCAACGGGA | CGTTTTCT | TGCCACGGTC | 8 |
DNA sequence
GGCCCTGTCGCAAACCCGTGGCGTTTACCCCGCGTTGACCATAGAGCCCGCATGGCACCTCCTGTTTCGGAGGCCACCCCATGATCCTGTCCGCCATAGC
CGCGAAGCTGAAGCAGCGCTCCAAAGCCGATTTCAAGGGCCGGCACTACGAGGCGGCCCTGATCGTTCAGGCCGTCGCCTGGTACCTGCGTTACCCGCTG
AGCTATCGTGACATCGAGGAGCTGTTCCTGGAGCGCGGGGTCGAGGTGGACCACAGCACCCTGAACCGTTGGGTGCTCGCCTACGCGCCGTTGATCGAGA
AGCGGCTGCGCCAATTTCGCAAGCCGCACTGCGGGTCGATCCGGATCGATGAGACCTACATCAAGGTGCGTGGTGAGTGGCGCTACCTCTACCGAGCTGT
CGACAAGCACGGCAACCCAGTCGACTTCCTCCTCACCGCTAACCGCGATCTCGACGCGGCCAAGCGGTTCTTCCGTAAGATGCTGGCGGATCAGCCACTT
CTTGCGCCCGATCGGATCGGCACGGATGGTGCCAGCACCTATCCACCCGCGATCGTGGCTGCGAAGAGCGATAGTCTTCTGCCCCACGCGCCGCTCCACT
ACGTCACCAAACATCTGCAGCAAGGCATCGAGAGCGACCACTTCCGGGTCAAGAAGAACATGCCCCGGATCGGCGGCTTCCGCTCCTTCCATACAGCGCG
ACGCACGATCTGCGGCTTCGAGGCCATGCTCTGGCTGCGGAAGGGCTTCGGTTTCGCCGGCGCGTGGACGGTCCGCGAGCAGAACCGTCTTCTCGCACTC
TGCTTTGGGCTTCCGCAGGCGAACAAAGCGTGAAAGCAGAACGGTAGAGAGCCTTCCGCGGCCTGACACTGAGTTCGCGACAGGCCC
CGCGAAGCTGAAGCAGCGCTCCAAAGCCGATTTCAAGGGCCGGCACTACGAGGCGGCCCTGATCGTTCAGGCCGTCGCCTGGTACCTGCGTTACCCGCTG
AGCTATCGTGACATCGAGGAGCTGTTCCTGGAGCGCGGGGTCGAGGTGGACCACAGCACCCTGAACCGTTGGGTGCTCGCCTACGCGCCGTTGATCGAGA
AGCGGCTGCGCCAATTTCGCAAGCCGCACTGCGGGTCGATCCGGATCGATGAGACCTACATCAAGGTGCGTGGTGAGTGGCGCTACCTCTACCGAGCTGT
CGACAAGCACGGCAACCCAGTCGACTTCCTCCTCACCGCTAACCGCGATCTCGACGCGGCCAAGCGGTTCTTCCGTAAGATGCTGGCGGATCAGCCACTT
CTTGCGCCCGATCGGATCGGCACGGATGGTGCCAGCACCTATCCACCCGCGATCGTGGCTGCGAAGAGCGATAGTCTTCTGCCCCACGCGCCGCTCCACT
ACGTCACCAAACATCTGCAGCAAGGCATCGAGAGCGACCACTTCCGGGTCAAGAAGAACATGCCCCGGATCGGCGGCTTCCGCTCCTTCCATACAGCGCG
ACGCACGATCTGCGGCTTCGAGGCCATGCTCTGGCTGCGGAAGGGCTTCGGTTTCGCCGGCGCGTGGACGGTCCGCGAGCAGAACCGTCTTCTCGCACTC
TGCTTTGGGCTTCCGCAGGCGAACAAAGCGTGAAAGCAGAACGGTAGAGAGCCTTCCGCGGCCTGACACTGAGTTCGCGACAGGCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
753 bp | 250 aa | 81 | 833 | + | No |
Chemistry : DDE
ORF sequence :
MILSAIAAKLKQRSKADFKGRHYEAALIVQAVAWYLRYPLSYRDIEELFLERGVEVDHSTLNRWVLAYAPLIEKRLRQFRKPHCGSIRIDETYIKVRGEW
RYLYRAVDKHGNPVDFLLTANRDLDAAKRFFRKMLADQPLLAPDRIGTDGASTYPPAIVAAKSDSLLPHAPLHYVTKHLQQGIESDHFRVKKNMPRIGGF
RSFHTARRTICGFEAMLWLRKGFGFAGAWTVREQNRLLALCFGLPQANKA
RYLYRAVDKHGNPVDFLLTANRDLDAAKRFFRKMLADQPLLAPDRIGTDGASTYPPAIVAAKSDSLLPHAPLHYVTKHLQQGIESDHFRVKKNMPRIGGF
RSFHTARRTICGFEAMLWLRKGFGFAGAWTVREQNRLLALCFGLPQANKA
Blast result :
Comments
There are one intact and one partial ISMex25 on one of the three native plasmids in AM1 genome. ISMex25 was found transposing into an introduced plasmid in several independently evolved Methylobacterium populations.
ISMex25 is 90% aa similar to ISMtsp1.
ISMex25 is 90% aa similar to ISMtsp1.
References
1] Stéphane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. (2009) PLoS ONE Submitted.
[2] Ming-Chun Lee & Hsin-Hung Chou, (2009) unpublished.
[2] Ming-Chun Lee & Hsin-Hung Chou, (2009) unpublished.