ISMex34
- Family IS200/IS605
- Group IS200
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Methylobacterium extorquens | Methylobacterium extorquens AM1 |
DNA section
IS Length : 658 bp
Ends
Left end : AATCCCACAGGGAGTTCCCCCGGCTTTGCCGGGGAGGCAGTAGGCGTTTGACGTTTTCGGCAGTGTCCATCGAAGAACATCTCTCCGTGAGCCGCCAAGC II struct. : Yes
Right end : CCGACCGGTGGTCCCACCATTGGGACCGCGTCAGCGATCCCTATAGCCGCCCTGGGCGGCCCAGATCGGAAAGCCCCCGGCTTTGCCGGGGGATGCTTAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GTCTCGTAAG | TTCT | TTCCTATGCC | ttac |
DNA sequence
AATCCCACAGGGAGTTCCCCCGGCTTTGCCGGGGAGGCAGTAGGCGTTTGACGTTTTCGGCAGTGTCCATCGAAGAACATCTCTCCGTGAGCCGCCAAGC
ACACGGGAAGATGTTCAACGATGGACGAGTTCGAGAGCTTAAGCCACACCAAGTGGACGTGCAAATACCACGTGGTCTTCATCCCAAAGGGACGTAGGAA
GGCGCTCTACGGGACGCTGCGCCCCCATCTCGGCGAGGTGTTCCGCACCCTGGCGCAGCAGAAGGAGAGCCGGATCGAGGAGGGGCATCTCCTGGCCGAT
CACGTGCACATGATGATCGCCATCCCTCCCAAATACGCCGTCTCTCAGGTGATCGGATACATCAAAGGCAAGAGCGCCATCCATCTCGCACGGGTGTATG
GCGAGCGCAGGCGCAATTTCGTTGGGCAGCACTTCTGGGCCAGGGGCTACTTCGTCTCGACCGTCGGTCGCGACGAGGCCGTGATCCGCGCCTACATCAA
GCAGCAGGAACAGGAGGACCAGCGCCTGGAGCAGTTGAACCTCTGGCGCTGACACCCACCGACCGGTGGTCCCACCATTGGGACCGCGTCAGCGATCCCT
ATAGCCGCCCTGGGCGGCCCAGATCGGAAAGCCCCCGGCTTTGCCGGGGGATGCTTAC
ACACGGGAAGATGTTCAACGATGGACGAGTTCGAGAGCTTAAGCCACACCAAGTGGACGTGCAAATACCACGTGGTCTTCATCCCAAAGGGACGTAGGAA
GGCGCTCTACGGGACGCTGCGCCCCCATCTCGGCGAGGTGTTCCGCACCCTGGCGCAGCAGAAGGAGAGCCGGATCGAGGAGGGGCATCTCCTGGCCGAT
CACGTGCACATGATGATCGCCATCCCTCCCAAATACGCCGTCTCTCAGGTGATCGGATACATCAAAGGCAAGAGCGCCATCCATCTCGCACGGGTGTATG
GCGAGCGCAGGCGCAATTTCGTTGGGCAGCACTTCTGGGCCAGGGGCTACTTCGTCTCGACCGTCGGTCGCGACGAGGCCGTGATCCGCGCCTACATCAA
GCAGCAGGAACAGGAGGACCAGCGCCTGGAGCAGTTGAACCTCTGGCGCTGACACCCACCGACCGGTGGTCCCACCATTGGGACCGCGTCAGCGATCCCT
ATAGCCGCCCTGGGCGGCCCAGATCGGAAAGCCCCCGGCTTTGCCGGGGGATGCTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
432 bp | 143 aa | 121 | 552 | + | No |
Chemistry : Y1
ORF sequence :
MDEFESLSHTKWTCKYHVVFIPKGRRKALYGTLRPHLGEVFRTLAQQKESRIEEGHLLADHVHMMIAIPPKYAVSQVIGYIKGKSAIHLARVYGERRRNF
VGQHFWARGYFVSTVGRDEAVIRAYIKQQEQEDQRLEQLNLWR
VGQHFWARGYFVSTVGRDEAVIRAYIKQQEQEDQRLEQLNLWR
Blast result :
Comments
ISMex34 is 88% aa similar to ISCARN10.
References
1] Stephane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources.(2009)PLoS ONE Submitted.