ISMex23
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Methylobacterium extorquens | Methylobacterium extorquens AM1 |
DNA section
IS Length : 1390 bp
Ends
Left end : GTTCGATGATCTCTCCACCAGAAACTCTTGAAGCCTTGCCTTCAGGTTGGGGAAAGCTCGCATCGGCGCGCTGTGAATGGTTGGAGACATTTTCGTTCCC II struct. : No
Right end : TCGACGAGGCCTCACGGTCTCCGAAAATCCCCGCTCTTCAGGGGGAAGATGTTAAGGTGCCTGGGCGCGACGTCTTCGATCTCGTGGCGGCCCACTCGGT II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TACCCGCCGCGCGCTCG | TTCT | CGCGGTCGAGGTCATCAA |
DNA sequence
GTTCGATGATCTCTCCACCAGAAACTCTTGAAGCCTTGCCTTCAGGTTGGGGAAAGCTCGCATCGGCGCGCTGTGAATGGTTGGAGACATTTTCGTTCCC
TGATAAGAACAGACCGTGACCATCGTCCGAGGCTTCCGCTACAGGCTGGATCCTCTGCCGGAGCAGGAACACCTGCTCCGGCAGTTCGCGGGGGTGTGTC
GCCTCGTCTACAACCTCGGCCTGGAGCAACGCGCGACCTGGGGCCGGAGACATCGGATCGGGTTTGCCTCTCAATGCGTCGACCTGACCCGGCTTCGAGC
CGAGTTCGACTGGGTGCGCGCCGTCTATGTCTCGTGCCAGCAGCAGGCTCTGCGCGATCTCGACCGAGCCTTCCAGAACTTCTTCGCCGGACGCGCCTCG
TTTCCGCGCCCGCGCAAGCGCGGCGTCAACGACAGCTTGCGCTTCCCCGGCCGAGAGATCGAGATCAAGCGGCTGAACGCGAGATGGTCGGCCGTACGTC
TGCCGAAGATCGGCTGGGTCAAGTTCCGCGACACCCAGCCGACGCGTGGCAGCATGAAGAACGCCACCGTCTCGCTCGACGCGGACGGCTGGCAGGTCTC
CTTCGCCTGCGAGATCGAGCACGAAGCTCCCGCGCCGCTGCCCGCGATCATCGGGATCGACCGCGGCGTGGCGACGACGCTCGCCCTCTCGACGGGCGAG
ACGATGAAGATGCCCACCAGCCTGGAGCGGATCGAGGCTCGTAAGAGGAAGGCACAGCGCGTCGTCGCCCGGCGCCAGCGCGGCTCGAAGCGCCGGCGGC
GAGCGCAGCGGCGCGTGGCCCGCCTACAGGCCCGACAGGCCCACATCCGGCGCGACTTCCACCACCGGGCGGCGCTCGGCATCGCTCGCCGGTTCGGCGT
CGCCGTGCTCGAAGCTCTGAACACCAGAAACATGACCGCCTCGGCGCGCGGCACCGTCATGGAGCCCGGCCGCAACGTGCGCCAGAAGGCTGGGCTGAAC
CGGGCGATCCTCAACGCGGGTTGGCACGCCTTCGCGACGATCCTGAGCTACAAGATGGAGGAGAGAGGCGGTCAGGTCGTGACGGTCCCGGCACGGTTCA
CGAGCCAGACCTGCGCGGCCTGTGGTGTCGTCGATGCAAGGAGCCGCGAGAGCCAAGCGCGCTTCTCCTGCATCAGTTGTGGTCACACCGACCACGCCGA
CACCAATGCCGCGATTAATATACAACGGCGGTGGAACACACCGTTGCTGGACGTGGAGGGTTTGCGTCAGCGGCCCTACGAAGCGTCAACTCGACGAGGC
CTCACGGTCTCCGAAAATCCCCGCTCTTCAGGGGGAAGATGTTAAGGTGCCTGGGCGCGACGTCTTCGATCTCGTGGCGGCCCACTCGGT
TGATAAGAACAGACCGTGACCATCGTCCGAGGCTTCCGCTACAGGCTGGATCCTCTGCCGGAGCAGGAACACCTGCTCCGGCAGTTCGCGGGGGTGTGTC
GCCTCGTCTACAACCTCGGCCTGGAGCAACGCGCGACCTGGGGCCGGAGACATCGGATCGGGTTTGCCTCTCAATGCGTCGACCTGACCCGGCTTCGAGC
CGAGTTCGACTGGGTGCGCGCCGTCTATGTCTCGTGCCAGCAGCAGGCTCTGCGCGATCTCGACCGAGCCTTCCAGAACTTCTTCGCCGGACGCGCCTCG
TTTCCGCGCCCGCGCAAGCGCGGCGTCAACGACAGCTTGCGCTTCCCCGGCCGAGAGATCGAGATCAAGCGGCTGAACGCGAGATGGTCGGCCGTACGTC
TGCCGAAGATCGGCTGGGTCAAGTTCCGCGACACCCAGCCGACGCGTGGCAGCATGAAGAACGCCACCGTCTCGCTCGACGCGGACGGCTGGCAGGTCTC
CTTCGCCTGCGAGATCGAGCACGAAGCTCCCGCGCCGCTGCCCGCGATCATCGGGATCGACCGCGGCGTGGCGACGACGCTCGCCCTCTCGACGGGCGAG
ACGATGAAGATGCCCACCAGCCTGGAGCGGATCGAGGCTCGTAAGAGGAAGGCACAGCGCGTCGTCGCCCGGCGCCAGCGCGGCTCGAAGCGCCGGCGGC
GAGCGCAGCGGCGCGTGGCCCGCCTACAGGCCCGACAGGCCCACATCCGGCGCGACTTCCACCACCGGGCGGCGCTCGGCATCGCTCGCCGGTTCGGCGT
CGCCGTGCTCGAAGCTCTGAACACCAGAAACATGACCGCCTCGGCGCGCGGCACCGTCATGGAGCCCGGCCGCAACGTGCGCCAGAAGGCTGGGCTGAAC
CGGGCGATCCTCAACGCGGGTTGGCACGCCTTCGCGACGATCCTGAGCTACAAGATGGAGGAGAGAGGCGGTCAGGTCGTGACGGTCCCGGCACGGTTCA
CGAGCCAGACCTGCGCGGCCTGTGGTGTCGTCGATGCAAGGAGCCGCGAGAGCCAAGCGCGCTTCTCCTGCATCAGTTGTGGTCACACCGACCACGCCGA
CACCAATGCCGCGATTAATATACAACGGCGGTGGAACACACCGTTGCTGGACGTGGAGGGTTTGCGTCAGCGGCCCTACGAAGCGTCAACTCGACGAGGC
CTCACGGTCTCCGAAAATCCCCGCTCTTCAGGGGGAAGATGTTAAGGTGCCTGGGCGCGACGTCTTCGATCTCGTGGCGGCCCACTCGGT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1230 bp | 409 aa | 116 | 1345 | + | No |
AG : TnpB
ORF sequence :
VTIVRGFRYRLDPLPEQEHLLRQFAGVCRLVYNLGLEQRATWGRRHRIGFASQCVDLTRLRAEFDWVRAVYVSCQQQALRDLDRAFQNFFAGRASFPRPR
KRGVNDSLRFPGREIEIKRLNARWSAVRLPKIGWVKFRDTQPTRGSMKNATVSLDADGWQVSFACEIEHEAPAPLPAIIGIDRGVATTLALSTGETMKMP
TSLERIEARKRKAQRVVARRQRGSKRRRRAQRRVARLQARQAHIRRDFHHRAALGIARRFGVAVLEALNTRNMTASARGTVMEPGRNVRQKAGLNRAILN
AGWHAFATILSYKMEERGGQVVTVPARFTSQTCAACGVVDARSRESQARFSCISCGHTDHADTNAAINIQRRWNTPLLDVEGLRQRPYEASTRRGLTVSE
NPRSSGGRC
KRGVNDSLRFPGREIEIKRLNARWSAVRLPKIGWVKFRDTQPTRGSMKNATVSLDADGWQVSFACEIEHEAPAPLPAIIGIDRGVATTLALSTGETMKMP
TSLERIEARKRKAQRVVARRQRGSKRRRRAQRRVARLQARQAHIRRDFHHRAALGIARRFGVAVLEALNTRNMTASARGTVMEPGRNVRQKAGLNRAILN
AGWHAFATILSYKMEERGGQVVTVPARFTSQTCAACGVVDARSRESQARFSCISCGHTDHADTNAAINIQRRWNTPLLDVEGLRQRPYEASTRRGLTVSE
NPRSSGGRC
Blast result :
Comments
ISMex23 is 89% aa similar to ISMex43.
References
1] Stephane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. (2009) PLoS ONE Submitted.