ISMex31
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Methylobacterium extorquens | Methylobacterium extorquens AM1
Methylobacterium dichloromethanicum DM4 |
DNA section
IS Length : 1091 bp
Ends
IR Length : 11/12
IRL : tagcaaaGAGTTCGGTCGCCGTGCTGGGTATCGATCTCGGCAAAAACAGC
IRR : ggtGAGTTCCGTCGCGTCTTCTTTTTCGATCATTGCGACTCGCGGCTTGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGATCGGGAA | GTAAATTACA | 0 |
DNA sequence
TAGCAAAGAGTTCGGTCGCCGTGCTGGGTATCGATCTCGGCAAAAACAGCTGTAGCCTGGTTGGCTTCGACCCAGCCGGTACGGTGGTTCTGCGTCGTCG
CGCACGGCGTGACACGATCGTCGGCCTGACGGCCAAGCTGCCCGCTTGTGTCGTCGCGATGGAGGCCTGCTGCGGCGCCCATCACCTCGGGCGGCTGCTG
GCCGCGCAGGGACATACCATCCGACTGATGTCGCCCGAGTATGCCAAGGCGAAGAAGAACGACGACCGCGATGCCGAGGCGATCGCCGAGGCCGCCACAC
GTCCGACGATGCGCTTCGTGCCCCTCAAGGCGCCCGATCAACTCGACATGCAGAGCCTGCACCGGGTCCGGTCTCGGCTGGTCAGCATGCGTACCATGCT
CATGAACCAGCTCCGCGCGATCCTGCTGGAGCGCGGTCTCGTTTTCCCGCAAGGCCGCCGCAAGTTCGAGACGGCGGTCGGCATTCTCGTGACGGATCCC
CAGGCGCAGATTGGCGCGCGTATCCAAGCTCTTGTCGCCGAGATCCGTGAGGAGTGGGCAAGCCTCGACGGCCGTATCGAAGCTCTCGACCGAGAGTTCG
TGGCGCATGCCCGCGCCGACGAGGCGGCACGTCGCCTGGTGTCTATCTCAGGCGTCGGGCCGATGACGGCCACGGCCTTGCGCGCGGCCGTCGACGACGG
AAGCGCCTTCGCGTCCGCGCGCGACCTGCCGGCTTGGCTTGGCCTCGTGCCCCGACAGCATACGACCGGCGGCAAGCCGAAGCTGCTCGGCATCAGCAAG
AGGGGCAACGCCTATCTGCGTGGGCTCTTCATCCATGGGGCGCGCGCAGCGCTGGCCTCGCTGTCCAAGGTCGAGGATGCGACCGGCCGATGGCTGCGCA
GTCTGCTGGAATGTACACCTGTGGGCCCTAAAATAGCTGTTTAAGATCAACGGCGCGTCAATCTGCCACATATGATCTTCTGGCTTTTTCCACAAGGCGA
GCGCGCTTATCGCTTGGAACGGTGGTTCAACCGTTCCTGAACCAAGCCGCGAGTCGCAATGATCGAAAAAGAAGACGCGACGGAACTCACC
CGCACGGCGTGACACGATCGTCGGCCTGACGGCCAAGCTGCCCGCTTGTGTCGTCGCGATGGAGGCCTGCTGCGGCGCCCATCACCTCGGGCGGCTGCTG
GCCGCGCAGGGACATACCATCCGACTGATGTCGCCCGAGTATGCCAAGGCGAAGAAGAACGACGACCGCGATGCCGAGGCGATCGCCGAGGCCGCCACAC
GTCCGACGATGCGCTTCGTGCCCCTCAAGGCGCCCGATCAACTCGACATGCAGAGCCTGCACCGGGTCCGGTCTCGGCTGGTCAGCATGCGTACCATGCT
CATGAACCAGCTCCGCGCGATCCTGCTGGAGCGCGGTCTCGTTTTCCCGCAAGGCCGCCGCAAGTTCGAGACGGCGGTCGGCATTCTCGTGACGGATCCC
CAGGCGCAGATTGGCGCGCGTATCCAAGCTCTTGTCGCCGAGATCCGTGAGGAGTGGGCAAGCCTCGACGGCCGTATCGAAGCTCTCGACCGAGAGTTCG
TGGCGCATGCCCGCGCCGACGAGGCGGCACGTCGCCTGGTGTCTATCTCAGGCGTCGGGCCGATGACGGCCACGGCCTTGCGCGCGGCCGTCGACGACGG
AAGCGCCTTCGCGTCCGCGCGCGACCTGCCGGCTTGGCTTGGCCTCGTGCCCCGACAGCATACGACCGGCGGCAAGCCGAAGCTGCTCGGCATCAGCAAG
AGGGGCAACGCCTATCTGCGTGGGCTCTTCATCCATGGGGCGCGCGCAGCGCTGGCCTCGCTGTCCAAGGTCGAGGATGCGACCGGCCGATGGCTGCGCA
GTCTGCTGGAATGTACACCTGTGGGCCCTAAAATAGCTGTTTAAGATCAACGGCGCGTCAATCTGCCACATATGATCTTCTGGCTTTTTCCACAAGGCGA
GCGCGCTTATCGCTTGGAACGGTGGTTCAACCGTTCCTGAACCAAGCCGCGAGTCGCAATGATCGAAAAAGAAGACGCGACGGAACTCACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
924 bp | 307 aa | 21 | 944 | + | No |
Description :
ORF sequence :
VLGIDLGKNSCSLVGFDPAGTVVLRRRARRDTIVGLTAKLPACVVAMEACCGAHHLGRLLAAQGHTIRLMSPEYAKAKKNDDRDAEAIAEAATRPTMRFV
PLKAPDQLDMQSLHRVRSRLVSMRTMLMNQLRAILLERGLVFPQGRRKFETAVGILVTDPQAQIGARIQALVAEIREEWASLDGRIEALDREFVAHARAD
EAARRLVSISGVGPMTATALRAAVDDGSAFASARDLPAWLGLVPRQHTTGGKPKLLGISKRGNAYLRGLFIHGARAALASLSKVEDATGRWLRSLLECTP
VGPKIAV
PLKAPDQLDMQSLHRVRSRLVSMRTMLMNQLRAILLERGLVFPQGRRKFETAVGILVTDPQAQIGARIQALVAEIREEWASLDGRIEALDREFVAHARAD
EAARRLVSISGVGPMTATALRAAVDDGSAFASARDLPAWLGLVPRQHTTGGKPKLLGISKRGNAYLRGLFIHGARAALASLSKVEDATGRWLRSLLECTP
VGPKIAV
Blast result :
Comments
ISMex31 is 75% aa similar to ISMmg1.
References
1] Stephane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. (2009) PLoS ONE Submitted.