ISMex43
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Methylobacterium extorquens | Methylobacterium extorquens AM1 |
DNA section
IS Length : 1250 bp
Ends
Left end : TGGTTAGATGATCGCACGCGGCTTCCGCTTCAAGCTGGAACCGCTGCCCGAGCAGGAAGCCCTGTTCCGGCAGTTCGCGGGCGTGTGTCGCCTCGTCTAC II struct. : No
Right end : TCGCATCAGCGGCCCGTTGAAGCGTCAACTGGACGAGACCTCACAGTCTCCGAAAATCCCCTTCCTTCAGGGCGGGGAAGATGTTAAGTCGGTGTCTCGT II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GCAAGCGAAG | TTTGT | TCTGGAGGTG |
DNA sequence
TGGTTAGATGATCGCACGCGGCTTCCGCTTCAAGCTGGAACCGCTGCCCGAGCAGGAAGCCCTGTTCCGGCAGTTCGCGGGCGTGTGTCGCCTCGTCTAC
AATCTCGGCCTGGAACAGAAGGCGACGTGGGGACGGAAACACCGGCTCGGGTACGTCGCCCAGGCTGCTGACCTGACCCGCCTTCGCTCCGAGTTCGAAT
GGGTGCGTGCCGTCTACGTCTCGTGCCAGCAGCAGGCGTTGCGTGATCTCGACCGCGCCTTTCAGAACTTCTTCGCGGGCCGAGCAAGCTTCCCACGGCC
CCGCAAGCGCGGCGTCGATGACAGCTTCCGCTTCCCTGGTCGCGAGGCCGCGGTGAAGCCGATGAATGCCAAGTGGTCGGCCGTGCGCCTGCCCAAGATC
GGCTGGGTCAAGTTCCGCGATACGCGGCCGATGCGAGGCGTTCTGAAGAACGTGACGGTCAGCAACGATGCCTTGGGTTGGCACATCGCATTCACCTGCG
AGATCGATCACGAAGCAACCGCGCCGAACCCCGAGGCCGTCGGGATCGACCGAGGCGTAGCCACGACGCTCGCCCTGTCCACGGGCGAGATGCTGACGCT
GCCCGCGAGCCTGGAGCGCATCGAGGCTCAGAAGCGTCAGGCGCAGCGCGTCGTCGCCCGGCGCAAGCGTGGGTCGAACCGCAGGCGCAGGGCTCAGGCC
CGTGTCGCCCGTCTCCAAGCCCGGCAAGCCCGCATCCGGCGCGACTTCCACCACCGGGCTGCGCTCGACATCGCCAAGCGGTTCGGCGTCGCCGTACTCG
AAGACCTCAAAACGCGTGGCATGACCGCCAGCGCGAAAGGCACCGTAGCCGAACCCGGCCGGAACGTCCGTCAGAAGGCGGGTCTGAACCGGGTGATCTT
GAACGCGGGCTGGCACCAGTTCGCGACGATCCTGACGTACAAGGTGGAGGAGCGCGGCGGGCAGGTGGTCAGTGTGCCTGCCCGGTTCACGTCGCAGACT
TGCGCGGCGTGCGGTGTGGTTGATGCGAGGAGCCGCGAAAGCCAAGCGGTCTTCACCTGCATCAGTTGCGGCCACTCAGACCACGCCGACACCAACGCGG
CCATCAATATTAAACGGCGGTGGAACACACCGTTGCTGGACGTGGAGGGTTCGCATCAGCGGCCCGTTGAAGCGTCAACTGGACGAGACCTCACAGTCTC
CGAAAATCCCCTTCCTTCAGGGCGGGGAAGATGTTAAGTCGGTGTCTCGT
AATCTCGGCCTGGAACAGAAGGCGACGTGGGGACGGAAACACCGGCTCGGGTACGTCGCCCAGGCTGCTGACCTGACCCGCCTTCGCTCCGAGTTCGAAT
GGGTGCGTGCCGTCTACGTCTCGTGCCAGCAGCAGGCGTTGCGTGATCTCGACCGCGCCTTTCAGAACTTCTTCGCGGGCCGAGCAAGCTTCCCACGGCC
CCGCAAGCGCGGCGTCGATGACAGCTTCCGCTTCCCTGGTCGCGAGGCCGCGGTGAAGCCGATGAATGCCAAGTGGTCGGCCGTGCGCCTGCCCAAGATC
GGCTGGGTCAAGTTCCGCGATACGCGGCCGATGCGAGGCGTTCTGAAGAACGTGACGGTCAGCAACGATGCCTTGGGTTGGCACATCGCATTCACCTGCG
AGATCGATCACGAAGCAACCGCGCCGAACCCCGAGGCCGTCGGGATCGACCGAGGCGTAGCCACGACGCTCGCCCTGTCCACGGGCGAGATGCTGACGCT
GCCCGCGAGCCTGGAGCGCATCGAGGCTCAGAAGCGTCAGGCGCAGCGCGTCGTCGCCCGGCGCAAGCGTGGGTCGAACCGCAGGCGCAGGGCTCAGGCC
CGTGTCGCCCGTCTCCAAGCCCGGCAAGCCCGCATCCGGCGCGACTTCCACCACCGGGCTGCGCTCGACATCGCCAAGCGGTTCGGCGTCGCCGTACTCG
AAGACCTCAAAACGCGTGGCATGACCGCCAGCGCGAAAGGCACCGTAGCCGAACCCGGCCGGAACGTCCGTCAGAAGGCGGGTCTGAACCGGGTGATCTT
GAACGCGGGCTGGCACCAGTTCGCGACGATCCTGACGTACAAGGTGGAGGAGCGCGGCGGGCAGGTGGTCAGTGTGCCTGCCCGGTTCACGTCGCAGACT
TGCGCGGCGTGCGGTGTGGTTGATGCGAGGAGCCGCGAAAGCCAAGCGGTCTTCACCTGCATCAGTTGCGGCCACTCAGACCACGCCGACACCAACGCGG
CCATCAATATTAAACGGCGGTGGAACACACCGTTGCTGGACGTGGAGGGTTCGCATCAGCGGCCCGTTGAAGCGTCAACTGGACGAGACCTCACAGTCTC
CGAAAATCCCCTTCCTTCAGGGCGGGGAAGATGTTAAGTCGGTGTCTCGT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1230 bp | 409 aa | 8 | 1237 | + | No |
AG : TnpB
ORF sequence :
MIARGFRFKLEPLPEQEALFRQFAGVCRLVYNLGLEQKATWGRKHRLGYVAQAADLTRLRSEFEWVRAVYVSCQQQALRDLDRAFQNFFAGRASFPRPRK
RGVDDSFRFPGREAAVKPMNAKWSAVRLPKIGWVKFRDTRPMRGVLKNVTVSNDALGWHIAFTCEIDHEATAPNPEAVGIDRGVATTLALSTGEMLTLPA
SLERIEAQKRQAQRVVARRKRGSNRRRRAQARVARLQARQARIRRDFHHRAALDIAKRFGVAVLEDLKTRGMTASAKGTVAEPGRNVRQKAGLNRVILNA
GWHQFATILTYKVEERGGQVVSVPARFTSQTCAACGVVDARSRESQAVFTCISCGHSDHADTNAAINIKRRWNTPLLDVEGSHQRPVEASTGRDLTVSEN
PLPSGRGRC
RGVDDSFRFPGREAAVKPMNAKWSAVRLPKIGWVKFRDTRPMRGVLKNVTVSNDALGWHIAFTCEIDHEATAPNPEAVGIDRGVATTLALSTGEMLTLPA
SLERIEAQKRQAQRVVARRKRGSNRRRRAQARVARLQARQARIRRDFHHRAALDIAKRFGVAVLEDLKTRGMTASAKGTVAEPGRNVRQKAGLNRVILNA
GWHQFATILTYKVEERGGQVVSVPARFTSQTCAACGVVDARSRESQAVFTCISCGHSDHADTNAAINIKRRWNTPLLDVEGSHQRPVEASTGRDLTVSEN
PLPSGRGRC
Blast result :
Comments
ISMex43 is 56% (TnpB) aa similar to ISTfu1.
References
1] Stephane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. (2009) PLoS ONE Submitted.