ISMex28
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001511 | ND | Methylobacterium extorquens | Methylobacterium extorquens AM1 |
DNA section
IS Length : 1310 bp
Ends
IR Length : 16/18
IRL : CAGGGTGCTGCAAAAGTCGCTGGCAGCGTGGCTGGGGAGATGATTCACTC
IRR : CAGGCTGCTGCAGAAGTCCTGATTTGACGGTGGCGGAGATGGTTTTTGTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGATCACGCT | CTAG | TTTGTCCCGG | 4 |
DNA sequence
CAGGGTGCTGCAAAAGTCGCTGGCAGCGTGGCTGGGGAGATGATTCACTCTGCCAACGGGGTTTGTGGAGTTTGAGCGATGCGGGGGCGAGAGGCTGGAT
CCGACAACCTGTTCAGCTACGTCCGGCTTGAGGAACGTGTACCGGCCGACCACCCGCTTCGGCCGATCCGGGCTCTGGCCGATGACGTGCTGGCCGGACT
GAACGAACGCTTCGAGAGCCTGTACTCGGGCCTGGGCCGGCCCTCGATCCCGCCGGAGATGTTGCTGCGAGCCACGCTCTTGCAGGCGTTCTTCTCGGTG
CGCTCCGAGCGGATGCTGATGGAGCAGATCGACTATTATCTCTTGTTCCGCTGGTTCGTGGGCCTGGAGATCGATGCGCCGGTCTGGCACCCGACAGTGT
TCACGCACACCCGCGACCGGCTCTTGGAGACGGAGGTGGCCCGTGCCTTCCTGTCGGGTCTGCTTTCGCTCAACCCGGTCAAGCGGTTTCTGTCGAGCGA
GCACTTCTCGGTCGATGGCACTATGATCGATGCCTGGGCCTCGATGAAGAGCTTCCGGCCCAAGGATGGCTCGGGCGAGCCGCCGGGGCCGGGCCGCAAT
GGCGAGCGCGACTTCCGCAAGGAGAAGCGCTCGAACGCGACGCATGCCTCGACCACCGACGCGGATGCGCGGCTCTACCGCAAGGCGGACGGCCAGGAGA
GCCGGCTGTGCTACCTCGGCCACGCGCTGATGGAGAACCGCAACGGCCTGGTGGTGGACGCCAGCCTGACCCACGCCACCGGCACGGCCGAGCGCGAGGC
CGCCCTGCTCATGCTCGATCGTCGTCCCCGCCGGCACCGGATCACGCTGGGTGCGGACAAGCTGTTCGATGTGGAGGCCTTCGTCGGCGATCTGCGGGCG
CGGCAAGTGACGCCGCACGTCGCCATCAACGGGGTCGTGTCGAAAACCAGGCAAGGTGCGCAAGACCGCCCTCGACGGCCGTACGACGCGCCATGCCGGC
TACGCGATCAGCCTGCGCTGCCGCAAGCGGATCGAGGAGGCCTTCGGCTGGATCAAAGCGCAGGCGGGGCTGAGGAAGGTCAAGCTGCGCGGGCGGGCCA
AGGTCGAGGCGCTGTTCACCTTCGCGGTGGCCGCCTACAACCTCGTGCGCCTGCCCAAGCTGCTGGCACCGCCGGCCGCCTGACCGGGCGACACCGCCCC
CCGGCGCGGCAGCCGGGGGGCCAACGCCGGCCCTCGCCGGTCAGGCAAAACCGTTCCGACGACAAAAACCATCTCCGCCACCGTCAAATCAGGACTTCTG
CAGCAGCCTG
CCGACAACCTGTTCAGCTACGTCCGGCTTGAGGAACGTGTACCGGCCGACCACCCGCTTCGGCCGATCCGGGCTCTGGCCGATGACGTGCTGGCCGGACT
GAACGAACGCTTCGAGAGCCTGTACTCGGGCCTGGGCCGGCCCTCGATCCCGCCGGAGATGTTGCTGCGAGCCACGCTCTTGCAGGCGTTCTTCTCGGTG
CGCTCCGAGCGGATGCTGATGGAGCAGATCGACTATTATCTCTTGTTCCGCTGGTTCGTGGGCCTGGAGATCGATGCGCCGGTCTGGCACCCGACAGTGT
TCACGCACACCCGCGACCGGCTCTTGGAGACGGAGGTGGCCCGTGCCTTCCTGTCGGGTCTGCTTTCGCTCAACCCGGTCAAGCGGTTTCTGTCGAGCGA
GCACTTCTCGGTCGATGGCACTATGATCGATGCCTGGGCCTCGATGAAGAGCTTCCGGCCCAAGGATGGCTCGGGCGAGCCGCCGGGGCCGGGCCGCAAT
GGCGAGCGCGACTTCCGCAAGGAGAAGCGCTCGAACGCGACGCATGCCTCGACCACCGACGCGGATGCGCGGCTCTACCGCAAGGCGGACGGCCAGGAGA
GCCGGCTGTGCTACCTCGGCCACGCGCTGATGGAGAACCGCAACGGCCTGGTGGTGGACGCCAGCCTGACCCACGCCACCGGCACGGCCGAGCGCGAGGC
CGCCCTGCTCATGCTCGATCGTCGTCCCCGCCGGCACCGGATCACGCTGGGTGCGGACAAGCTGTTCGATGTGGAGGCCTTCGTCGGCGATCTGCGGGCG
CGGCAAGTGACGCCGCACGTCGCCATCAACGGGGTCGTGTCGAAAACCAGGCAAGGTGCGCAAGACCGCCCTCGACGGCCGTACGACGCGCCATGCCGGC
TACGCGATCAGCCTGCGCTGCCGCAAGCGGATCGAGGAGGCCTTCGGCTGGATCAAAGCGCAGGCGGGGCTGAGGAAGGTCAAGCTGCGCGGGCGGGCCA
AGGTCGAGGCGCTGTTCACCTTCGCGGTGGCCGCCTACAACCTCGTGCGCCTGCCCAAGCTGCTGGCACCGCCGGCCGCCTGACCGGGCGACACCGCCCC
CCGGCGCGGCAGCCGGGGGGCCAACGCCGGCCCTCGCCGGTCAGGCAAAACCGTTCCGACGACAAAAACCATCTCCGCCACCGTCAAATCAGGACTTCTG
CAGCAGCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1105 bp | 367 aa | 79 | 1183 | + | Yes |
Chemistry : DDE
ORF sequence :
MRGREAGSDNLFSYVRLEERVPADHPLRPIRALADDVLAGLNERFESLYSGLGRPSIPPEMLLRATLLQAFFSVRSERMLMEQIDYYLLFRWFVGLEIDA
PVWHPTVFTHTRDRLLETEVARAFLSGLLSLNPVKRFLSSEHFSVDGTMIDAWASMKSFRPKDGSGEPPGPGRNGERDFRKEKRSNATHASTTDADARLY
RKADGQESRLCYLGHALMENRNGLVVDASLTHATGTAEREAALLMLDRRPRRHRITLGADKLFDVEAFVGDLRARQVTPHVAINGVVSKTRKVRKTALDG
RTTRHAGYAISLRCRKRIEEAFGWIKAQAGLRKVKLRGRAKVEALFTFAVAAYNLVRLPKLLAPPAA
PVWHPTVFTHTRDRLLETEVARAFLSGLLSLNPVKRFLSSEHFSVDGTMIDAWASMKSFRPKDGSGEPPGPGRNGERDFRKEKRSNATHASTTDADARLY
RKADGQESRLCYLGHALMENRNGLVVDASLTHATGTAEREAALLMLDRRPRRHRITLGADKLFDVEAFVGDLRARQVTPHVAINGVVSKTRKVRKTALDG
RTTRHAGYAISLRCRKRIEEAFGWIKAQAGLRKVKLRGRAKVEALFTFAVAAYNLVRLPKLLAPPAA
Blast result :
Comments
ISMex28 is 69% aa similar to ISCARN71. The transposase was reconstructed in silico by joining (77-950;951-1181).
References
1] Stephane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. (2009)PLoS ONE Submitted.