ISMdi26

  • Family IS5
  • Group IS1031
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Methylobacterium dichloromethanicum
Methylobacterium dichloromethanicum DM4
DNA section
IS Length : 852 bp

Ends


IR Length : 13/15

IRL : GAGGGTGTTATGAACTGATAGGTGGGCGTCGCGTTGTGGGTGATGCCGAC
IRR : GAGCGTGTTATGCACCTGTCATAAGTTTTTCGGCCTGCCTGAGCATGAAG

Insertion site


Left flankDirect repeatRight flankDR Length
CTGTCGCAGTCCTAGGCGTTTGACGA2

DNA sequence

GAGGGTGTTATGAACTGATAGGTGGGCGTCGCGTTGTGGGTGATGCCGACCGATCGCCCCGCCTATCCGTCCGACGTGTCCGATGAAGAATGGGCGCTGG
TGGCGCCGTATCTGGCGCTGCTGCGAGAGGACTCGGCCCAGCGCGACTACGACCTGCGCGAGGTGTTCAACGGGCTGCGCTACATCGTGAAGACGGGGGC
ACCGTGGCGGTTCATGCCGCACGATCTGCCGCCGTGGGCGGCCGTCTACCAGCAGACGCAGCGCTGGCTGTCGGCCGACAGCTTCGCGGATGTGGCCGGC
GACCTGCGGGCGGTGCTGCGGATGGCGGCGGAGCGGGAGCCGGAGCCCTCGGCGGTGATCCTCGACAGCCGGACGCTACGCTTCTCGCCCGAGAGCGGCG
AGCGGGCGGGCTACGACGGGGCCAAGCGCAAGCGGGGGGCGAAGGTGCATCTGGCGGTGGACACGCCCGGCCATGTCGTGGCGCTGCACGTGACGCCCGC
GAGCACCGACGACCGGGCCGAGGTCGGCCGGCTGGCGGCCGAAGTTCAGGCGGAGACGAGCGACAGCGTCGAGTTGGCCTTCGTCGACCAGGGGTATTCG
GGGCCCAAGCCGGCGGCCGCCGCAAGCGCTCACGGCATCGCATTGGAGGTGGTGAAGGCGCCCGAGGCCAAGCGCGGTTTCGTGCTGCTGCCACGCCGGT
GGGTGGTGGAGCGCTCGTTTGCCTGGGCCACGCGCTGTCGGCGTTTGGTCAAGGATTACGAGCGCTACGCCAGCACGTTGGCCGGTCTACACATGGTCGC
CTTCGTCTGCTTCATGCTCAGGCAGGCCGAAAAACTTATGACAGGTGCATAACACGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
810 bp269 aa43852+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPTDRPAYPSDVSDEEWALVAPYLALLREDSAQRDYDLREVFNGLRYIVKTGAPWRFMPHDLPPWAAVYQQTQRWLSADSFADVAGDLRAVLRMAAEREP
EPSAVILDSRTLRFSPESGERAGYDGAKRKRGAKVHLAVDTPGHVVALHVTPASTDDRAEVGRLAAEVQAETSDSVELAFVDQGYSGPKPAAAASAHGIA
LEVVKAPEAKRGFVLLPRRWVVERSFAWATRCRRLVKDYERYASTLAGLHMVAFVCFMLRQAEKLMTGA

 

Blast result :
Comments
ISMdi26 is 72% aa similar to ISAzo23.
References
1] Stephane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. (2009) PLoS ONE Submitted.