ISMdi26
- Family IS5
- Group IS1031
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Methylobacterium dichloromethanicum | Methylobacterium dichloromethanicum DM4 |
DNA section
IS Length : 852 bp
Ends
IR Length : 13/15
IRL : GAGGGTGTTATGAACTGATAGGTGGGCGTCGCGTTGTGGGTGATGCCGAC
IRR : GAGCGTGTTATGCACCTGTCATAAGTTTTTCGGCCTGCCTGAGCATGAAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTGTCGCAGTCC | TA | GGCGTTTGACGA | 2 |
DNA sequence
GAGGGTGTTATGAACTGATAGGTGGGCGTCGCGTTGTGGGTGATGCCGACCGATCGCCCCGCCTATCCGTCCGACGTGTCCGATGAAGAATGGGCGCTGG
TGGCGCCGTATCTGGCGCTGCTGCGAGAGGACTCGGCCCAGCGCGACTACGACCTGCGCGAGGTGTTCAACGGGCTGCGCTACATCGTGAAGACGGGGGC
ACCGTGGCGGTTCATGCCGCACGATCTGCCGCCGTGGGCGGCCGTCTACCAGCAGACGCAGCGCTGGCTGTCGGCCGACAGCTTCGCGGATGTGGCCGGC
GACCTGCGGGCGGTGCTGCGGATGGCGGCGGAGCGGGAGCCGGAGCCCTCGGCGGTGATCCTCGACAGCCGGACGCTACGCTTCTCGCCCGAGAGCGGCG
AGCGGGCGGGCTACGACGGGGCCAAGCGCAAGCGGGGGGCGAAGGTGCATCTGGCGGTGGACACGCCCGGCCATGTCGTGGCGCTGCACGTGACGCCCGC
GAGCACCGACGACCGGGCCGAGGTCGGCCGGCTGGCGGCCGAAGTTCAGGCGGAGACGAGCGACAGCGTCGAGTTGGCCTTCGTCGACCAGGGGTATTCG
GGGCCCAAGCCGGCGGCCGCCGCAAGCGCTCACGGCATCGCATTGGAGGTGGTGAAGGCGCCCGAGGCCAAGCGCGGTTTCGTGCTGCTGCCACGCCGGT
GGGTGGTGGAGCGCTCGTTTGCCTGGGCCACGCGCTGTCGGCGTTTGGTCAAGGATTACGAGCGCTACGCCAGCACGTTGGCCGGTCTACACATGGTCGC
CTTCGTCTGCTTCATGCTCAGGCAGGCCGAAAAACTTATGACAGGTGCATAACACGCTC
TGGCGCCGTATCTGGCGCTGCTGCGAGAGGACTCGGCCCAGCGCGACTACGACCTGCGCGAGGTGTTCAACGGGCTGCGCTACATCGTGAAGACGGGGGC
ACCGTGGCGGTTCATGCCGCACGATCTGCCGCCGTGGGCGGCCGTCTACCAGCAGACGCAGCGCTGGCTGTCGGCCGACAGCTTCGCGGATGTGGCCGGC
GACCTGCGGGCGGTGCTGCGGATGGCGGCGGAGCGGGAGCCGGAGCCCTCGGCGGTGATCCTCGACAGCCGGACGCTACGCTTCTCGCCCGAGAGCGGCG
AGCGGGCGGGCTACGACGGGGCCAAGCGCAAGCGGGGGGCGAAGGTGCATCTGGCGGTGGACACGCCCGGCCATGTCGTGGCGCTGCACGTGACGCCCGC
GAGCACCGACGACCGGGCCGAGGTCGGCCGGCTGGCGGCCGAAGTTCAGGCGGAGACGAGCGACAGCGTCGAGTTGGCCTTCGTCGACCAGGGGTATTCG
GGGCCCAAGCCGGCGGCCGCCGCAAGCGCTCACGGCATCGCATTGGAGGTGGTGAAGGCGCCCGAGGCCAAGCGCGGTTTCGTGCTGCTGCCACGCCGGT
GGGTGGTGGAGCGCTCGTTTGCCTGGGCCACGCGCTGTCGGCGTTTGGTCAAGGATTACGAGCGCTACGCCAGCACGTTGGCCGGTCTACACATGGTCGC
CTTCGTCTGCTTCATGCTCAGGCAGGCCGAAAAACTTATGACAGGTGCATAACACGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
810 bp | 269 aa | 43 | 852 | + | No |
Chemistry : DDE
ORF sequence :
MPTDRPAYPSDVSDEEWALVAPYLALLREDSAQRDYDLREVFNGLRYIVKTGAPWRFMPHDLPPWAAVYQQTQRWLSADSFADVAGDLRAVLRMAAEREP
EPSAVILDSRTLRFSPESGERAGYDGAKRKRGAKVHLAVDTPGHVVALHVTPASTDDRAEVGRLAAEVQAETSDSVELAFVDQGYSGPKPAAAASAHGIA
LEVVKAPEAKRGFVLLPRRWVVERSFAWATRCRRLVKDYERYASTLAGLHMVAFVCFMLRQAEKLMTGA
EPSAVILDSRTLRFSPESGERAGYDGAKRKRGAKVHLAVDTPGHVVALHVTPASTDDRAEVGRLAAEVQAETSDSVELAFVDQGYSGPKPAAAASAHGIA
LEVVKAPEAKRGFVLLPRRWVVERSFAWATRCRRLVKDYERYASTLAGLHMVAFVCFMLRQAEKLMTGA
Blast result :
Comments
ISMdi26 is 72% aa similar to ISAzo23.
References
1] Stephane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. (2009) PLoS ONE Submitted.