ISMex35
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Methylobacterium extorquens | Methylobacterium extorquens AM1 |
DNA section
IS Length : 1294 bp
Ends
IR Length : 14/17
IRL : GGGCACCTCCAAAAACCTCGCGGTTTGAGGCGTTTCGTGGTGTGATGGGG
IRR : GGACACCTCCAAGTACCGGTCTGACGGCGGCATTTGGAAGGGGCGGGTGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGGGTGCCGGTC | AGGT | GCGTGGCGACCAC | 4 |
DNA sequence
GGGCACCTCCAAAAACCTCGCGGTTTGAGGCGTTTCGTGGTGTGATGGGGTTGGCGGTCGGTGAGGTGCTGTGATGCGCGGTCAGCCCGGTTTTTTCGAT
GTCGATGAGCGGTTGAAGGACCTCTCGGGCAAGGGCGACGCGCTGGAGCGGTTGAGCCGCATCGTCGATTTCGAGCTGTTCCGGCCTGACCTCGCCCGTG
CCGTGCCTCGCTCGGATGGGTCGAAGGGGGGACGACCGCCCTTCGACCTCGTGTTCATGTTCAAGGTGCTGATCCTCCAGACCAGCCACTCGCTCTCGGA
CGAGCGCACGGAGTTCCTGATCAAGGACCGGCTGTCGTTCATGCGCTTCCTCGGGCTGGGGCTGTCCGACCCGGTCCCCGATGCCAACACGATCTGGACC
TTCCGCGAAGCGCTCACCCGGGCCGAGATCGCGGGCCAGCCGGCCATCGCGGTGCTGTTCTCGGCCTACGAGGCGGCCTTGCGGCGGGCCGGCTTCTTGG
CGATGGGCGGGCAGATCGTCGACGCCACGGTCGTGGCCGCGCCCAAGCAGCGCAACACCGAGGCGGAGAAGGCCGAGCTGAAGGGCGGCCGTGTGCCCGA
CGCCTGGAAGGCCAAGCCGGCCAAGCTCGCCCAGAAGGACCGCGACGCGCGCTGGACGATCAAGTGGTCGAAGGCCAAGCCGGCCGAGGACGGCGGGAAG
CGGATCGACCTCGCGGTGCCGGCCTTCGGCTACAAGAACCACGTCGGCATCGATCGCCGCCACGGGCTGATCCGAACCTGGATCGCCACCGACGCGGCCC
GGCACGACGGGGCGCAGTTGCCCGGCCTCCTCTCCAAGGCCAACACCGCCGGCGACGTCTGGGCTGACACGGCCTACCGCTCGAAGGCCAACGAGGCGCA
TCTCGCAGCCCATGGCTTCCGCTCCCGCATCCATCGCAAGAAGCCGCCGGGCAAGCCGATGCCGAGGAACGTCGCCCGCGCCAATGGCGGGAAGTCGAAG
GTCCGCGCGGCCGTCGAGCACGTCTTCGCCCGTCAAAAGGGGCCGATGGGGCTGGTCGTGCGCACCATCGGCTTGACCCGGGCCAGGGTGAAGATCGGGC
TGGCCAACCTGATCTACAACATGAACCGGGCGGTCTCGCTCACCGGCTCCCGGACGAGGACGGCCTGAGCATCGAGATCGATGCGATCCGGCTCGGCTCG
GGCCGGCGATGACGCCGCGTCAGATCCGCAACGCCCTCAGACGCCCACCCGCCCCTTCCAAATGCCGCCGTCAGACCGGTACTTGGAGGTGTCC
GTCGATGAGCGGTTGAAGGACCTCTCGGGCAAGGGCGACGCGCTGGAGCGGTTGAGCCGCATCGTCGATTTCGAGCTGTTCCGGCCTGACCTCGCCCGTG
CCGTGCCTCGCTCGGATGGGTCGAAGGGGGGACGACCGCCCTTCGACCTCGTGTTCATGTTCAAGGTGCTGATCCTCCAGACCAGCCACTCGCTCTCGGA
CGAGCGCACGGAGTTCCTGATCAAGGACCGGCTGTCGTTCATGCGCTTCCTCGGGCTGGGGCTGTCCGACCCGGTCCCCGATGCCAACACGATCTGGACC
TTCCGCGAAGCGCTCACCCGGGCCGAGATCGCGGGCCAGCCGGCCATCGCGGTGCTGTTCTCGGCCTACGAGGCGGCCTTGCGGCGGGCCGGCTTCTTGG
CGATGGGCGGGCAGATCGTCGACGCCACGGTCGTGGCCGCGCCCAAGCAGCGCAACACCGAGGCGGAGAAGGCCGAGCTGAAGGGCGGCCGTGTGCCCGA
CGCCTGGAAGGCCAAGCCGGCCAAGCTCGCCCAGAAGGACCGCGACGCGCGCTGGACGATCAAGTGGTCGAAGGCCAAGCCGGCCGAGGACGGCGGGAAG
CGGATCGACCTCGCGGTGCCGGCCTTCGGCTACAAGAACCACGTCGGCATCGATCGCCGCCACGGGCTGATCCGAACCTGGATCGCCACCGACGCGGCCC
GGCACGACGGGGCGCAGTTGCCCGGCCTCCTCTCCAAGGCCAACACCGCCGGCGACGTCTGGGCTGACACGGCCTACCGCTCGAAGGCCAACGAGGCGCA
TCTCGCAGCCCATGGCTTCCGCTCCCGCATCCATCGCAAGAAGCCGCCGGGCAAGCCGATGCCGAGGAACGTCGCCCGCGCCAATGGCGGGAAGTCGAAG
GTCCGCGCGGCCGTCGAGCACGTCTTCGCCCGTCAAAAGGGGCCGATGGGGCTGGTCGTGCGCACCATCGGCTTGACCCGGGCCAGGGTGAAGATCGGGC
TGGCCAACCTGATCTACAACATGAACCGGGCGGTCTCGCTCACCGGCTCCCGGACGAGGACGGCCTGAGCATCGAGATCGATGCGATCCGGCTCGGCTCG
GGCCGGCGATGACGCCGCGTCAGATCCGCAACGCCCTCAGACGCCCACCCGCCCCTTCCAAATGCCGCCGTCAGACCGGTACTTGGAGGTGTCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1095 bp | 364 aa | 74 | 1168 | + | No |
Chemistry : DDE
ORF sequence :
MRGQPGFFDVDERLKDLSGKGDALERLSRIVDFELFRPDLARAVPRSDGSKGGRPPFDLVFMFKVLILQTSHSLSDERTEFLIKDRLSFMRFLGLGLSDP
VPDANTIWTFREALTRAEIAGQPAIAVLFSAYEAALRRAGFLAMGGQIVDATVVAAPKQRNTEAEKAELKGGRVPDAWKAKPAKLAQKDRDARWTIKWSK
AKPAEDGGKRIDLAVPAFGYKNHVGIDRRHGLIRTWIATDAARHDGAQLPGLLSKANTAGDVWADTAYRSKANEAHLAAHGFRSRIHRKKPPGKPMPRNV
ARANGGKSKVRAAVEHVFARQKGPMGLVVRTIGLTRARVKIGLANLIYNMNRAVSLTGSRTRTA
VPDANTIWTFREALTRAEIAGQPAIAVLFSAYEAALRRAGFLAMGGQIVDATVVAAPKQRNTEAEKAELKGGRVPDAWKAKPAKLAQKDRDARWTIKWSK
AKPAEDGGKRIDLAVPAFGYKNHVGIDRRHGLIRTWIATDAARHDGAQLPGLLSKANTAGDVWADTAYRSKANEAHLAAHGFRSRIHRKKPPGKPMPRNV
ARANGGKSKVRAAVEHVFARQKGPMGLVVRTIGLTRARVKIGLANLIYNMNRAVSLTGSRTRTA
Blast result :
Comments
ISMex35 is 72% aa similar to ISSsp126.
References
1] Stephane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. (2009) PLoS ONE Submitted.