ISMex35

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Methylobacterium extorquens
Methylobacterium extorquens AM1
DNA section
IS Length : 1294 bp

Ends


IR Length : 14/17

IRL : GGGCACCTCCAAAAACCTCGCGGTTTGAGGCGTTTCGTGGTGTGATGGGG
IRR : GGACACCTCCAAGTACCGGTCTGACGGCGGCATTTGGAAGGGGCGGGTGG

Insertion site


Left flankDirect repeatRight flankDR Length
AGGGTGCCGGTCAGGTGCGTGGCGACCAC4

DNA sequence

GGGCACCTCCAAAAACCTCGCGGTTTGAGGCGTTTCGTGGTGTGATGGGGTTGGCGGTCGGTGAGGTGCTGTGATGCGCGGTCAGCCCGGTTTTTTCGAT
GTCGATGAGCGGTTGAAGGACCTCTCGGGCAAGGGCGACGCGCTGGAGCGGTTGAGCCGCATCGTCGATTTCGAGCTGTTCCGGCCTGACCTCGCCCGTG
CCGTGCCTCGCTCGGATGGGTCGAAGGGGGGACGACCGCCCTTCGACCTCGTGTTCATGTTCAAGGTGCTGATCCTCCAGACCAGCCACTCGCTCTCGGA
CGAGCGCACGGAGTTCCTGATCAAGGACCGGCTGTCGTTCATGCGCTTCCTCGGGCTGGGGCTGTCCGACCCGGTCCCCGATGCCAACACGATCTGGACC
TTCCGCGAAGCGCTCACCCGGGCCGAGATCGCGGGCCAGCCGGCCATCGCGGTGCTGTTCTCGGCCTACGAGGCGGCCTTGCGGCGGGCCGGCTTCTTGG
CGATGGGCGGGCAGATCGTCGACGCCACGGTCGTGGCCGCGCCCAAGCAGCGCAACACCGAGGCGGAGAAGGCCGAGCTGAAGGGCGGCCGTGTGCCCGA
CGCCTGGAAGGCCAAGCCGGCCAAGCTCGCCCAGAAGGACCGCGACGCGCGCTGGACGATCAAGTGGTCGAAGGCCAAGCCGGCCGAGGACGGCGGGAAG
CGGATCGACCTCGCGGTGCCGGCCTTCGGCTACAAGAACCACGTCGGCATCGATCGCCGCCACGGGCTGATCCGAACCTGGATCGCCACCGACGCGGCCC
GGCACGACGGGGCGCAGTTGCCCGGCCTCCTCTCCAAGGCCAACACCGCCGGCGACGTCTGGGCTGACACGGCCTACCGCTCGAAGGCCAACGAGGCGCA
TCTCGCAGCCCATGGCTTCCGCTCCCGCATCCATCGCAAGAAGCCGCCGGGCAAGCCGATGCCGAGGAACGTCGCCCGCGCCAATGGCGGGAAGTCGAAG
GTCCGCGCGGCCGTCGAGCACGTCTTCGCCCGTCAAAAGGGGCCGATGGGGCTGGTCGTGCGCACCATCGGCTTGACCCGGGCCAGGGTGAAGATCGGGC
TGGCCAACCTGATCTACAACATGAACCGGGCGGTCTCGCTCACCGGCTCCCGGACGAGGACGGCCTGAGCATCGAGATCGATGCGATCCGGCTCGGCTCG
GGCCGGCGATGACGCCGCGTCAGATCCGCAACGCCCTCAGACGCCCACCCGCCCCTTCCAAATGCCGCCGTCAGACCGGTACTTGGAGGTGTCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1095 bp364 aa741168+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRGQPGFFDVDERLKDLSGKGDALERLSRIVDFELFRPDLARAVPRSDGSKGGRPPFDLVFMFKVLILQTSHSLSDERTEFLIKDRLSFMRFLGLGLSDP
VPDANTIWTFREALTRAEIAGQPAIAVLFSAYEAALRRAGFLAMGGQIVDATVVAAPKQRNTEAEKAELKGGRVPDAWKAKPAKLAQKDRDARWTIKWSK
AKPAEDGGKRIDLAVPAFGYKNHVGIDRRHGLIRTWIATDAARHDGAQLPGLLSKANTAGDVWADTAYRSKANEAHLAAHGFRSRIHRKKPPGKPMPRNV
ARANGGKSKVRAAVEHVFARQKGPMGLVVRTIGLTRARVKIGLANLIYNMNRAVSLTGSRTRTA

 

Blast result :
Comments
ISMex35 is 72% aa similar to ISSsp126.
References
1] Stephane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. (2009) PLoS ONE Submitted.