ISMex19
- Family IS5
- Group IS427
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Methylobacterium extorquens | Methylobacterium extorquens AM1 |
DNA section
IS Length : 849 bp
Ends
IR Length : 16/19
IRL : GAGCGTGGGACAAAACCGCGGCTGAGGGGGTTGGGAGAGGATGGACGCTC
IRR : GAGTTAGGGACAAAACCGCTTTGCCTGAGCTTGGCAGATGAGTGCGCATG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCACCGAG | TAA | GCCCGCTT | 3 |
DNA sequence
GAGCGTGGGACAAAACCGCGGCTGAGGGGGTTGGGAGAGGATGGACGCTCTCGTACCCGACGATCTCTGGGCGGTGGTCGAGCCGCTTCTGCCGCCTGAG
CCCGAGAAGCCGAAAGGCGGTCGCCCTCGTGCCTCTGACCGGGCGGCGCTGGCCGGCATCATCTTGGTGCTGCGGTCCGGCATGCAGTGGAAGCACCTGC
CGCGTTCAGAGGTGGGCTGCAGCGGCAAGACGAGTTGGAGGCGGCTGGGCACATGGCAGGCGGCCGGCGTCTGGGCCGCGTTGCACCGGGTGATGCTGGA
GCAACTTCAGGACGCCGATGCGCTCGACTGGTCGCGGGCGGCTCTCGACAGCGCCAGTCTGCCGGCCAAAAAAGGGGCTGGTCAACGGGCCCGAACCCGA
CGGATCGGGGTAAGCCGGGCACGAAGCGCCACCTCGTCGTGGACGCCAGGGGCACGCCGCTCGGCCTGACGCTGAGCGGGGCCAACTGCAACGACAGCCG
TATGCTGGCCGCCACGCTCGATGCGGTACCGGGCGTGCGCACGGGTCGGCGCGGCCGCCCGCGGCGCAGACCCGACAAGCTGCACGCCGATAAGGGATAC
GACCATCGCCGTTGTCGGTGCGAGTGCCGGGCTCGCAGCATCACACCGCGTATTGCCCGGCGTGGCATCGAGAGCAGCGAACGGCTGGGTCGCTATCGCT
GGATCGTGGAACGGACACTGGCTTGGCTCGCCCGCTTCCGCCGTCTCACCATCCGCTACGAACGTCGCGCCGACCTGCACCTCGCCCTCACCACCCTCGC
ATGCGCACTCATCTGCCAAGCTCAGGCAAAGCGGTTTTGTCCCTAACTC
CCCGAGAAGCCGAAAGGCGGTCGCCCTCGTGCCTCTGACCGGGCGGCGCTGGCCGGCATCATCTTGGTGCTGCGGTCCGGCATGCAGTGGAAGCACCTGC
CGCGTTCAGAGGTGGGCTGCAGCGGCAAGACGAGTTGGAGGCGGCTGGGCACATGGCAGGCGGCCGGCGTCTGGGCCGCGTTGCACCGGGTGATGCTGGA
GCAACTTCAGGACGCCGATGCGCTCGACTGGTCGCGGGCGGCTCTCGACAGCGCCAGTCTGCCGGCCAAAAAAGGGGCTGGTCAACGGGCCCGAACCCGA
CGGATCGGGGTAAGCCGGGCACGAAGCGCCACCTCGTCGTGGACGCCAGGGGCACGCCGCTCGGCCTGACGCTGAGCGGGGCCAACTGCAACGACAGCCG
TATGCTGGCCGCCACGCTCGATGCGGTACCGGGCGTGCGCACGGGTCGGCGCGGCCGCCCGCGGCGCAGACCCGACAAGCTGCACGCCGATAAGGGATAC
GACCATCGCCGTTGTCGGTGCGAGTGCCGGGCTCGCAGCATCACACCGCGTATTGCCCGGCGTGGCATCGAGAGCAGCGAACGGCTGGGTCGCTATCGCT
GGATCGTGGAACGGACACTGGCTTGGCTCGCCCGCTTCCGCCGTCTCACCATCCGCTACGAACGTCGCGCCGACCTGCACCTCGCCCTCACCACCCTCGC
ATGCGCACTCATCTGCCAAGCTCAGGCAAAGCGGTTTTGTCCCTAACTC
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
417 bp | 142 aa | 53 | 469 | + | No |
Description : First part of the transposase
ORF sequence :
MDALVPDDLWAVVEPLLPPEPEKPKGGRPRASDRAALAGIILVLRSGMQWKHLPRSEVGCSGKTSWRRLGTWQAAGVWAALHRVMLEQLQDADALDWSRA
ALDSASLPAKKGAGQRARTRRIGVSRARSATSSWTPGARRSA
ALDSASLPAKKGAGQRARTRRIGVSRARSATSSWTPGARRSA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
708 bp | 235 aa | 139 | 846 | + | No |
Description : Second part of the transposase
ORF sequence :
PGGAGRHHLGAAVRHAVEAPAAFRGGLQRQDELEAAGHMAGGRRLGRVAPGDAGATSGRRCARLVAGGSRQRQSAGQKRGWSTGPNPTDRGKPGTKRHLV
VDARGTPLGLTLSGANCNDSRMLAATLDAVPGVRTGRRGRPRRRPDKLHADKGYDHRRCRCECRARSITPRIARRGIESSERLGRYRWIVERTLAWLARF
RRLTIRYERRADLHLALTTLACALICQAQAKRFCP
VDARGTPLGLTLSGANCNDSRMLAATLDAVPGVRTGRRGRPRRRPDKLHADKGYDHRRCRCECRARSITPRIARRGIESSERLGRYRWIVERTLAWLARF
RRLTIRYERRADLHLALTTLACALICQAQAKRFCP
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
794 bp | 268 aa | 53 | 846 | + | Yes |
Chemistry : DDE
ORF sequence :
MDALVPDDLWAVVEPLLPPEPEKPKGGRPRASDRAALAGIILVLRSGMQWKHLPRSEVGCSGKTSWRRLGTWQAAGVWAALHRVMLEQLQDADALDWSRA
ALDSASLPAKKRGWSTGPNPTDRGKPGTKRHLVVDARGTPLGLTLSGANCNDSRMLAATLDAVPGVRTGRRGRPRRRPDKLHADKGYDHRRCRCECRARS
ITPRIARRGIESSERLGRYRWIVERTLAWLARFRRLTIRYERRADLHLALTTLACALICQAQAKRFCP
ALDSASLPAKKRGWSTGPNPTDRGKPGTKRHLVVDARGTPLGLTLSGANCNDSRMLAATLDAVPGVRTGRRGRPRRRPDKLHADKGYDHRRCRCECRARS
ITPRIARRGIESSERLGRYRWIVERTLAWLARFRRLTIRYERRADLHLALTTLACALICQAQAKRFCP
Blast result :
Comments
ISMex19 is 70% aa similar to IS1421.
The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Stephane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. (2009) PLoS ONE Submitted.