ISMex26
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Methylobacterium extorquens | Methylobacterium extorquens AM1 |
DNA section
IS Length : 1676 bp
Ends
IR Length : 31/42
IRL : GGGGTCAAAGTTGGGCTCTGACTCACTTTCGGTGCAGGCGGGTTGATGGA
IRR : GGCGTGCAACTTTGGGTCTGGCGCACTCTTGATGCAGGCGGCGTCACCCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATTGGACGCCGATCCCCCGCCTCAA | GAAACACACCCATGGGTG | 0 |
DNA sequence
GGGGTCAAAGTTGGGCTCTGACTCACTTTCGGTGCAGGCGGGTTGATGGATCTCGGCTTCAGCCGTCGGAGATCCGGCCATGCCCCGCAGCCTTCATCTC
GGTTCTGTCGTTCCGCCCGGCCTTGTCGTCGATCACATCGAGGTGGGGGCGGGTCTGACCATCACCGCTCGGCCGACCGCCGCGTCGGCCCGGTGTCCGA
GGTGTGACGGGATCTCGTCCCGTGTGCACAGCCGGTACATCCGCACCCTATCGGATCTGCCGGTCGCTGGCCGACGCGTCGTAATCACGATCAGCGTCCG
CCGCTTCCGGTGCGTCGGAACGGAATGCCGGACGAAGGTCTTCGCCGAGCGGCTCGAACCGGACCTCGCCGCCGCCTACGCCCGACGAACAGGACGGTTG
GAGACCATCGTCCATCATCTCGGCCTCGCGCTCGGTGGCAGGCCGGCGGAGAGCTTCGCCCGCCGACTGATGGTGCCGGCGAGCCGGGACACGATGCTGC
GAACCGTGCGCCGACGCGCCCAGAGGCCGGCCGAGACCCTGACCGTGATCGGCATCGACGATTGGGCCTTCCGCCGTGGGCAACGCTACGGCACGCTGAT
CTGCGACCTGGAGCGGCGGCGCGTCGTCGCCCTCCTGCCGGATCGCGAGAGCGGCACCATCGAGGCATGGCTCACCGCCCATCCCGAGATCGCCGTCCTC
GCACGGGACCGCGGCGGCGGCTACGGCGAGGCCGCGGCGCGGGCGTTGCCCACGACGATCCAGGTCGCCGACCGCTGGCATCTGATGGAGAACGCCAGCG
CCGCCTTCCTCAATGCCGTGCGCAAGTCGATGACCGCCATCCGAGTCGCGGTGGGCGCCGCCACGATCGACCCCAATCGGCTGACCTGCGCCGAGCGCCT
GCAATACGAGGGCTACCGTCGGCGCACGGCGACTGCCAAGGCGATACGGACGCTGTCGCGACAGGGCATGCCGATCCGGCAGATCGTCTGCACGACCGGC
CACAGCCGCAGGCTCGTGCGCCACGTGTTGCGCGGCCTGACCGATGACGTGTTCCGGGCGCGCCAGAGCAGCCTGGAGTCCTACCTGCCCCGGCTCGACG
ACGAGTGGGCGGCCGGCTGCTGCAACGGTGCCGAACTCTGGCGACGCCTGCGCGCCGGCGGGTTCACTGGCAGCCTCCGCGTCGTTGGAGAGTGGGCGAC
CCGCCGTCGGCGCCATGAGCAGTCCCCCGCGGGTGCTCCCGGCAAGGTACCCTCTGCGCGCCTCCTCGCGCGACTGATGACGACCGGGCGGGATGGCCTG
AGCAAGGCCGAGGCCGTGACGGTGACGACGATCGAGGCAGCGGTACCAGCGCTCGACGAGGCGCGCTCTCTCCTGGCCGGCTTCCAGGCCATGATCCGCG
AGCGGAGAACACACGACCTCGACACCTGGATCGACACGGCGGCTCGCAGCCTCCTCGCGTCCTTCGCGAACGGCCTGTCGCGAGACAGAAAGGCTGTCGC
CGCGGCGCTGGCCGAGCCCTGGTCGAATGGCCAGACCGAGGGGCAGATCACTCGCCTCAAGCTCGTGAAGCGACAGATGTTCGGTCGGGCCAAGCTCGAT
CTGCTCGAAGCGCGGCTGATCGGCGTTGGGTGACGCCGCCTGCATCAAGAGTGCGCCAGACCCAAAGTTGCACGCC
GGTTCTGTCGTTCCGCCCGGCCTTGTCGTCGATCACATCGAGGTGGGGGCGGGTCTGACCATCACCGCTCGGCCGACCGCCGCGTCGGCCCGGTGTCCGA
GGTGTGACGGGATCTCGTCCCGTGTGCACAGCCGGTACATCCGCACCCTATCGGATCTGCCGGTCGCTGGCCGACGCGTCGTAATCACGATCAGCGTCCG
CCGCTTCCGGTGCGTCGGAACGGAATGCCGGACGAAGGTCTTCGCCGAGCGGCTCGAACCGGACCTCGCCGCCGCCTACGCCCGACGAACAGGACGGTTG
GAGACCATCGTCCATCATCTCGGCCTCGCGCTCGGTGGCAGGCCGGCGGAGAGCTTCGCCCGCCGACTGATGGTGCCGGCGAGCCGGGACACGATGCTGC
GAACCGTGCGCCGACGCGCCCAGAGGCCGGCCGAGACCCTGACCGTGATCGGCATCGACGATTGGGCCTTCCGCCGTGGGCAACGCTACGGCACGCTGAT
CTGCGACCTGGAGCGGCGGCGCGTCGTCGCCCTCCTGCCGGATCGCGAGAGCGGCACCATCGAGGCATGGCTCACCGCCCATCCCGAGATCGCCGTCCTC
GCACGGGACCGCGGCGGCGGCTACGGCGAGGCCGCGGCGCGGGCGTTGCCCACGACGATCCAGGTCGCCGACCGCTGGCATCTGATGGAGAACGCCAGCG
CCGCCTTCCTCAATGCCGTGCGCAAGTCGATGACCGCCATCCGAGTCGCGGTGGGCGCCGCCACGATCGACCCCAATCGGCTGACCTGCGCCGAGCGCCT
GCAATACGAGGGCTACCGTCGGCGCACGGCGACTGCCAAGGCGATACGGACGCTGTCGCGACAGGGCATGCCGATCCGGCAGATCGTCTGCACGACCGGC
CACAGCCGCAGGCTCGTGCGCCACGTGTTGCGCGGCCTGACCGATGACGTGTTCCGGGCGCGCCAGAGCAGCCTGGAGTCCTACCTGCCCCGGCTCGACG
ACGAGTGGGCGGCCGGCTGCTGCAACGGTGCCGAACTCTGGCGACGCCTGCGCGCCGGCGGGTTCACTGGCAGCCTCCGCGTCGTTGGAGAGTGGGCGAC
CCGCCGTCGGCGCCATGAGCAGTCCCCCGCGGGTGCTCCCGGCAAGGTACCCTCTGCGCGCCTCCTCGCGCGACTGATGACGACCGGGCGGGATGGCCTG
AGCAAGGCCGAGGCCGTGACGGTGACGACGATCGAGGCAGCGGTACCAGCGCTCGACGAGGCGCGCTCTCTCCTGGCCGGCTTCCAGGCCATGATCCGCG
AGCGGAGAACACACGACCTCGACACCTGGATCGACACGGCGGCTCGCAGCCTCCTCGCGTCCTTCGCGAACGGCCTGTCGCGAGACAGAAAGGCTGTCGC
CGCGGCGCTGGCCGAGCCCTGGTCGAATGGCCAGACCGAGGGGCAGATCACTCGCCTCAAGCTCGTGAAGCGACAGATGTTCGGTCGGGCCAAGCTCGAT
CTGCTCGAAGCGCGGCTGATCGGCGTTGGGTGACGCCGCCTGCATCAAGAGTGCGCCAGACCCAAAGTTGCACGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1554 bp | 517 aa | 80 | 1633 | + | No |
Chemistry : Unknow
ORF sequence :
MPRSLHLGSVVPPGLVVDHIEVGAGLTITARPTAASARCPRCDGISSRVHSRYIRTLSDLPVAGRRVVITISVRRFRCVGTECRTKVFAERLEPDLAAAY
ARRTGRLETIVHHLGLALGGRPAESFARRLMVPASRDTMLRTVRRRAQRPAETLTVIGIDDWAFRRGQRYGTLICDLERRRVVALLPDRESGTIEAWLTA
HPEIAVLARDRGGGYGEAAARALPTTIQVADRWHLMENASAAFLNAVRKSMTAIRVAVGAATIDPNRLTCAERLQYEGYRRRTATAKAIRTLSRQGMPIR
QIVCTTGHSRRLVRHVLRGLTDDVFRARQSSLESYLPRLDDEWAAGCCNGAELWRRLRAGGFTGSLRVVGEWATRRRRHEQSPAGAPGKVPSARLLARLM
TTGRDGLSKAEAVTVTTIEAAVPALDEARSLLAGFQAMIRERRTHDLDTWIDTAARSLLASFANGLSRDRKAVAAALAEPWSNGQTEGQITRLKLVKRQM
FGRAKLDLLEARLIGVG
ARRTGRLETIVHHLGLALGGRPAESFARRLMVPASRDTMLRTVRRRAQRPAETLTVIGIDDWAFRRGQRYGTLICDLERRRVVALLPDRESGTIEAWLTA
HPEIAVLARDRGGGYGEAAARALPTTIQVADRWHLMENASAAFLNAVRKSMTAIRVAVGAATIDPNRLTCAERLQYEGYRRRTATAKAIRTLSRQGMPIR
QIVCTTGHSRRLVRHVLRGLTDDVFRARQSSLESYLPRLDDEWAAGCCNGAELWRRLRAGGFTGSLRVVGEWATRRRRHEQSPAGAPGKVPSARLLARLM
TTGRDGLSKAEAVTVTTIEAAVPALDEARSLLAGFQAMIRERRTHDLDTWIDTAARSLLASFANGLSRDRKAVAAALAEPWSNGQTEGQITRLKLVKRQM
FGRAKLDLLEARLIGVG
Blast result :
Comments
ISMex26 is 72% aa similar to ISMex24.
References
1] Stephane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. (2009) PLoS ONE Submitted.