ISMdi25
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Methylobacterium dichloromethanicum | Methylobacterium dichloromethanicum DM4 |
DNA section
IS Length : 1601 bp
Ends
IR Length : 18/30
IRL : CGTAGCGCAGCAGGAGCATCGGCGCCGGTTCTGGGCGATGATCGCGTCAG
IRR : CGTACCGATTCCTGAGGATCGCCACGCGTGGCGCACCAAGCGCCAGCCGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCCGGGCGAC | CGCC | CGCGCTCGGA | 4 |
DNA sequence
CGTAGCGCAGCAGGAGCATCGGCGCCGGTTCTGGGCGATGATCGCGTCAGGTCTGTCGAGCGAGGACGCTGCGATGGGATGCGGGATTTCTCAACCGGTC
GGTACCCGCTGGTTTCGGGAGGCGGGCGGGATGGCGCCCTCGCATCTCAGGCCATCGTCGCCCCCGTCCTCGGAACGCTACCTCTCGTTTGCCGAGCGTG
AGGAGATCGCGCTGCTGCGGGCGCAAGGCCACGGGGTTCGAGACGTCGCGCGTCGCCTGGGGCGAGCGGCCTCGACCATCTCGTGGGAGTTGCGACGGAA
CGCGGCGACGCGCAACGGCAATCTGGACTACCGCGCCTCGACCGCGCAGTGGCATTCCGAGCGCTCGGCCCGTCGGCCGAAGCCGTCGAAGCTGGCCGCG
AACGCAACTCTGCGGACGTACGTACAGGATCGGCTCGCCGGCGCCGTTGTCGCTCCAGGCGGAGCCATCCTGCCGGGTCCCTCCGTGCCCTGGAAAGGGC
GGCGGCACGGGCGACGTCAGCACCGGCGCTGGGCTATGGCTTGGAGCCCGCAGCAGATTGCCGAGCGCCTGCGGCTCGACTTTCCAGACGACACGACAAT
GCGCGTCAGTCATGAGGCGATCTACCAAGCTCTCTACGTCCAGGGCCGAGGTGCGTTGAAGCGTGAACTGACCGCATGCCTGCGCACGGGCCGAGCTTTG
CGGGTGCCGCAGGCACGGAGTTGCCGACGGGGCAAATCGTTCGTCACCCCCGAGGTCTTGATCAGCGAGCGGCCGTCCGAGGCGCAGGATCGCGCCGTGC
CGGGACACTGGGAAGGCGACCTGATTCTCGGGCTGCGCAGTTCGGCGATCGGTACGCTGGTCGAGCGCACGACGCGGTTCACGATGCTGCTGCATCTTCC
ACCGATGGAAGGCCACGGTGTAGCGCCGCGTGAGAAGAATGGGCCGGCGCTGGCGGGTCACGGTGCCGAGGCGGTGCGCGACGCGATCGCCCGCACGATC
ACGAGCCTGCCGGACCAACTGCGGCGCTCATTGACCTGGGACCAGGGGGCTGAGATGGCCGAGCACGCTCGACTACGGATCGATACGGGATTGCAGGTCT
ACTTCTGCGATCCACGCTCGCCCTGGCAGCGGGGTACGAACGAGAACACCAACGGTCTGCTGCGCCAGTACTTCCCAAAGGGGACCGACCTCGGCGCCCA
CAGCCCAGCCGATCTCGCGGCCGTCGCTTCGGCGCTCAACGGTAGACCGCGCAAGACGCTTGGATGGAAAACGCCCGCCGAGGCTCTCGACGCGGTCCTA
CGATCTGGTCATGCTGGTGTTGCGACGACCAGTTGAACCTGGGCAGGATAACATCGCGTTATTGATGACCCAAGGCGCGCTCAGCCGGTCGCAACGCAGG
CCGGCGATGAAAGTCTGCGTGCCCCCGTGCCCGAACGGCGCCTTGGCGTGCAGCCGGCGCCCCCTGCGGCTGCGCCCGCGCAGGCGGGTCATCTTGGTGG
TGACGGAGGTCTCGTCGAGGAAGACGAGGCGATGACAGGCCTCTCGCATCAGCGGCTGGCGCTTGGTGCGCCACGCGTGGCGATCCTCAGGAATCGGTAC
G
GGTACCCGCTGGTTTCGGGAGGCGGGCGGGATGGCGCCCTCGCATCTCAGGCCATCGTCGCCCCCGTCCTCGGAACGCTACCTCTCGTTTGCCGAGCGTG
AGGAGATCGCGCTGCTGCGGGCGCAAGGCCACGGGGTTCGAGACGTCGCGCGTCGCCTGGGGCGAGCGGCCTCGACCATCTCGTGGGAGTTGCGACGGAA
CGCGGCGACGCGCAACGGCAATCTGGACTACCGCGCCTCGACCGCGCAGTGGCATTCCGAGCGCTCGGCCCGTCGGCCGAAGCCGTCGAAGCTGGCCGCG
AACGCAACTCTGCGGACGTACGTACAGGATCGGCTCGCCGGCGCCGTTGTCGCTCCAGGCGGAGCCATCCTGCCGGGTCCCTCCGTGCCCTGGAAAGGGC
GGCGGCACGGGCGACGTCAGCACCGGCGCTGGGCTATGGCTTGGAGCCCGCAGCAGATTGCCGAGCGCCTGCGGCTCGACTTTCCAGACGACACGACAAT
GCGCGTCAGTCATGAGGCGATCTACCAAGCTCTCTACGTCCAGGGCCGAGGTGCGTTGAAGCGTGAACTGACCGCATGCCTGCGCACGGGCCGAGCTTTG
CGGGTGCCGCAGGCACGGAGTTGCCGACGGGGCAAATCGTTCGTCACCCCCGAGGTCTTGATCAGCGAGCGGCCGTCCGAGGCGCAGGATCGCGCCGTGC
CGGGACACTGGGAAGGCGACCTGATTCTCGGGCTGCGCAGTTCGGCGATCGGTACGCTGGTCGAGCGCACGACGCGGTTCACGATGCTGCTGCATCTTCC
ACCGATGGAAGGCCACGGTGTAGCGCCGCGTGAGAAGAATGGGCCGGCGCTGGCGGGTCACGGTGCCGAGGCGGTGCGCGACGCGATCGCCCGCACGATC
ACGAGCCTGCCGGACCAACTGCGGCGCTCATTGACCTGGGACCAGGGGGCTGAGATGGCCGAGCACGCTCGACTACGGATCGATACGGGATTGCAGGTCT
ACTTCTGCGATCCACGCTCGCCCTGGCAGCGGGGTACGAACGAGAACACCAACGGTCTGCTGCGCCAGTACTTCCCAAAGGGGACCGACCTCGGCGCCCA
CAGCCCAGCCGATCTCGCGGCCGTCGCTTCGGCGCTCAACGGTAGACCGCGCAAGACGCTTGGATGGAAAACGCCCGCCGAGGCTCTCGACGCGGTCCTA
CGATCTGGTCATGCTGGTGTTGCGACGACCAGTTGAACCTGGGCAGGATAACATCGCGTTATTGATGACCCAAGGCGCGCTCAGCCGGTCGCAACGCAGG
CCGGCGATGAAAGTCTGCGTGCCCCCGTGCCCGAACGGCGCCTTGGCGTGCAGCCGGCGCCCCCTGCGGCTGCGCCCGCGCAGGCGGGTCATCTTGGTGG
TGACGGAGGTCTCGTCGAGGAAGACGAGGCGATGACAGGCCTCTCGCATCAGCGGCTGGCGCTTGGTGCGCCACGCGTGGCGATCCTCAGGAATCGGTAC
G
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1206 bp | 401 aa | 131 | 1336 | + | No |
Chemistry : DDE
ORF sequence :
MAPSHLRPSSPPSSERYLSFAEREEIALLRAQGHGVRDVARRLGRAASTISWELRRNAATRNGNLDYRASTAQWHSERSARRPKPSKLAANATLRTYVQD
RLAGAVVAPGGAILPGPSVPWKGRRHGRRQHRRWAMAWSPQQIAERLRLDFPDDTTMRVSHEAIYQALYVQGRGALKRELTACLRTGRALRVPQARSCRR
GKSFVTPEVLISERPSEAQDRAVPGHWEGDLILGLRSSAIGTLVERTTRFTMLLHLPPMEGHGVAPREKNGPALAGHGAEAVRDAIARTITSLPDQLRRS
LTWDQGAEMAEHARLRIDTGLQVYFCDPRSPWQRGTNENTNGLLRQYFPKGTDLGAHSPADLAAVASALNGRPRKTLGWKTPAEALDAVLRSGHAGVATT
S
RLAGAVVAPGGAILPGPSVPWKGRRHGRRQHRRWAMAWSPQQIAERLRLDFPDDTTMRVSHEAIYQALYVQGRGALKRELTACLRTGRALRVPQARSCRR
GKSFVTPEVLISERPSEAQDRAVPGHWEGDLILGLRSSAIGTLVERTTRFTMLLHLPPMEGHGVAPREKNGPALAGHGAEAVRDAIARTITSLPDQLRRS
LTWDQGAEMAEHARLRIDTGLQVYFCDPRSPWQRGTNENTNGLLRQYFPKGTDLGAHSPADLAAVASALNGRPRKTLGWKTPAEALDAVLRSGHAGVATT
S
Blast result :
Comments
ISMdi25 is 78% aa similar to ISMsm8.
References
1] Stephane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. (2009) PLoS ONE Submitted.