ISMdi11
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Methylobacterium dichloromethanicum | Methylobacterium dichloromethanicum DM4 |
DNA section
IS Length : 1053 bp
Ends
IR Length : 20/26
IRL : TGTTTGGTCCCGTTGTGTGGTGGTACGTCTGACCCCGCATGGAGGGACGC
IRR : TGTTCGGTCCCATGGTGTGATGTGACTGATCGGTTTTGAACCGAGCGAGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGCCACTAGG | CCGCACGGCA | 0 |
DNA sequence
TGTTTGGTCCCGTTGTGTGGTGGTACGTCTGACCCCGCATGGAGGGACGCGCTATGGGCCAGCTTCTTCACGGCAGCGCCACGACGACTGAGGCGGTCCG
TCGGGCAATCTAAGCTCGTCAAGAGAGCGTGAGAGCCGCCGCAAAGCGGCACGGCATCAGCCCGACTAAAGTGCAGAAGTGGCGTGGCCGCGAGACGGTC
ACGGACGCCCGGATGGGGCCGAAGGAGATCCGCTCGACCGTGCTGACGCTGGAGGAGGAGGCGATTATCGTCGCGTTCCGGCGGCATACGCTCCTACCGC
TGGGTGATTGCCTTTACGCGCTGCAGCCGACGAGTCTGCACCTGCGCCGGTCGAGCCTGCATCGCTGCTTCCAGCGCCACGACATCGCCCGGTTGCCCGA
TACCGATGGCGACAAGCCCAAGCGTTCACGCTTTGAAGCTTACACGATCGGTTATTTCCGCATCGACATCGCGCAGGTCAGCACAGAAGAGGGCAAGCTG
AACCTGTTCGTGGCCATCGACCGAACCAGCAAGTTCGCCTTCGTCCAACTGCACGAGAAGGCGACACGACGTGTAGCGGCAGACTTTCTTCGCGCGCTGA
TCGCGGCCGTGCCCTACACGGTCCACACGGTGCTCACCGACGACGGCACGCAGTTCGTCGACACCACACCGGTCAGCGAGGAAGCCGAGGCAAACGCGGA
AGCCTATTGGGCCGAGCGCGACGAGCCGCGCCTCTACCGGTGGCATCCGTTCGATTGGGCTTGCAACCAAAACAAGGTCGAGCATCGAACGACCAAACCA
CGCTGCCCGTGGACGAACGGTCAGGTCGAGCGCATGAACCGAACGATCAACGACGCCACCGTCAAGCGCTACCACTACGGCAGCCACGACGCCCTGCGTC
CTCACCTGCTGCTCTTCGTCGACGCCTACAATTACAGACGCCGGCTCAAGACCCTGCGCGGCCTCACGCCCTACGAGTTCGTCTGCAAAACCTGGACTGA
GCAGCTCGCTCGGTTCAAAACCGATCAGTCACATCACACCATGGGACCGAACA
TCGGGCAATCTAAGCTCGTCAAGAGAGCGTGAGAGCCGCCGCAAAGCGGCACGGCATCAGCCCGACTAAAGTGCAGAAGTGGCGTGGCCGCGAGACGGTC
ACGGACGCCCGGATGGGGCCGAAGGAGATCCGCTCGACCGTGCTGACGCTGGAGGAGGAGGCGATTATCGTCGCGTTCCGGCGGCATACGCTCCTACCGC
TGGGTGATTGCCTTTACGCGCTGCAGCCGACGAGTCTGCACCTGCGCCGGTCGAGCCTGCATCGCTGCTTCCAGCGCCACGACATCGCCCGGTTGCCCGA
TACCGATGGCGACAAGCCCAAGCGTTCACGCTTTGAAGCTTACACGATCGGTTATTTCCGCATCGACATCGCGCAGGTCAGCACAGAAGAGGGCAAGCTG
AACCTGTTCGTGGCCATCGACCGAACCAGCAAGTTCGCCTTCGTCCAACTGCACGAGAAGGCGACACGACGTGTAGCGGCAGACTTTCTTCGCGCGCTGA
TCGCGGCCGTGCCCTACACGGTCCACACGGTGCTCACCGACGACGGCACGCAGTTCGTCGACACCACACCGGTCAGCGAGGAAGCCGAGGCAAACGCGGA
AGCCTATTGGGCCGAGCGCGACGAGCCGCGCCTCTACCGGTGGCATCCGTTCGATTGGGCTTGCAACCAAAACAAGGTCGAGCATCGAACGACCAAACCA
CGCTGCCCGTGGACGAACGGTCAGGTCGAGCGCATGAACCGAACGATCAACGACGCCACCGTCAAGCGCTACCACTACGGCAGCCACGACGCCCTGCGTC
CTCACCTGCTGCTCTTCGTCGACGCCTACAATTACAGACGCCGGCTCAAGACCCTGCGCGGCCTCACGCCCTACGAGTTCGTCTGCAAAACCTGGACTGA
GCAGCTCGCTCGGTTCAAAACCGATCAGTCACATCACACCATGGGACCGAACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
924 bp | 308 aa | 129 | 1052 | + | No |
Chemistry : DDE
ORF sequence :
VRAAAKRHGISPTKVQKWRGRETVTDARMGPKEIRSTVLTLEEEAIIVAFRRHTLLPLGDCLYALQPTSLHLRRSSLHRCFQRHDIARLPDTDGDKPKRS
RFEAYTIGYFRIDIAQVSTEEGKLNLFVAIDRTSKFAFVQLHEKATRRVAADFLRALIAAVPYTVHTVLTDDGTQFVDTTPVSEEAEANAEAYWAERDEP
RLYRWHPFDWACNQNKVEHRTTKPRCPWTNGQVERMNRTINDATVKRYHYGSHDALRPHLLLFVDAYNYRRRLKTLRGLTPYEFVCKTWTEQLARFKTDQ
SHHTMGPN
RFEAYTIGYFRIDIAQVSTEEGKLNLFVAIDRTSKFAFVQLHEKATRRVAADFLRALIAAVPYTVHTVLTDDGTQFVDTTPVSEEAEANAEAYWAERDEP
RLYRWHPFDWACNQNKVEHRTTKPRCPWTNGQVERMNRTINDATVKRYHYGSHDALRPHLLLFVDAYNYRRRLKTLRGLTPYEFVCKTWTEQLARFKTDQ
SHHTMGPN
Blast result :
Comments
ISMdi11 is 75% aa similar to ISGdi9.
The transposase is shorter (25 aa less) of the other member of IS481 family.
There is no stop codon at the end of the element, the transposase use the first STOP codon after the end of the IRR.
The transposase in the database is cut at the end of the IS.
The transposase is shorter (25 aa less) of the other member of IS481 family.
There is no stop codon at the end of the element, the transposase use the first STOP codon after the end of the IRR.
The transposase in the database is cut at the end of the IS.
References
1] Stéphane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. PLoS ONE Submitted. (2009)