ISMdi13
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Methylobacterium dichloromethanicum | Methylobacterium dichloromethanicum DM4 |
DNA section
IS Length : 1416 bp
Ends
IR Length : 24/31
IRL : GAGCTATCGCTGAAAGTTGGTGACGGCGGGAATCGGGAAGGCGGCATATC
IRR : GAGCTATCGCCAATTTTTGGTGACGGCCTGACCGGTCAGGCGGCGGCGGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTTCATCGCA | TAGCGCCG | CTGCCCAAAG | 8 |
DNA sequence
GAGCTATCGCTGAAAGTTGGTGACGGCGGGAATCGGGAAGGCGGCATATCGTGGGGGTGCTTGACGCCTCCACTTCTCCACCGAAGGAGCGATATGCCGT
GTCCAAAGATAACATCATCAAGCTGATTCAGCCAGGAAACGTCGACGATCAACTCACCGAAATCTTGCGCAATGGGGCGCGTGCTCTGTTGGCCCAGGCG
GTCGAGGCCGAGGTCGCGGACTTTCTCGGCAAGCATGCCGATTTGAAGACCGCGGACGGCCACCAGCGCGTCGTGCGCCACGGTCACCTGCCGGAACGCG
AGGTGATGACCGGTATTGGTCCGGTCGCCGTCCGCCAGCCGCGTGTACGCGATCGCGAGGCGGACGCCGCCGATCCCGACCGCATCCGGTTCTCTCCGTC
GACCTGCCGCCCTACATGCGCCGGTCGAAGTCGATCGAGACGCTGCTGCCGATCCTTTACCTGAAGGGTATCTCGACCGGCGACTTCTCCGAGGCGCTGG
CGGCGCTGCTCGGCAAGGATGCTGTCGGGTTGTCAGCATCCGCCATCGGCCGCCTGAAGGACGGCTGGCTCGACGAGCACACCGCGTGGCAGAAGCGCGA
TCTGTCGGTGAAGCGCTACGTCTACATCTGGGCCGATGGCATCCATCTCCAGGCGCGCCTCGAAGACGAAAAGCAGTGCATCCTGGTGCTGATCGGCGCG
ACGCCGGAAGGCCGCAAGGAACTGGTCGGCTTCACCGATGGTGCCCGCGAGAGCGCGCAGGACTGGCGCGATCTGCTGCTCGACCTGAAGCGGCGCGGGC
TCGACGTGCCGCCGCAGCTCGCCATCGCCGATGGCGCGCTCGGGTTCTGGAAGGCCGCCGGTGAGGTCTGGCCGAAAACGCGCGAGCAGCGCTGTTGGGT
GCACAAGACCGCGAACGTGCTCGCCAAGTTGCCGAAGAGCCAGCAGCCGAAGGCCAAACGCGCACTGCAGGAGATCTGGATGGCCGAAACCAAGGCCGCC
GCCGAGCTGGCGTTCGACGCCTTCATCGAGAGCTACACGCCCAAATACGAGAAGGCGGCCGACTGCCTGAGCAAGGACCGGGACACGCTACTGGCGTTCT
ACGACTTCCCGGCCGAGCACTGGAAACACCTGCGGACGACCAATCCCATTGAAAGCACCTTCGCTACCGTGCGCCACCGCACGATCCGATCGAAGGGGTG
CCTGTCCAACAGGACGGCGCTCGCGATGGTCTTCAAACTGCTCGAGGCCGCGCAGAAAAGCTGGCGTCGTCTCGATGGCCACAACCAGTTGCCAAAACTC
GTTCTCGGTGTGACATTCAACGACGGGATCGAGGTCATCGCCAAACCGAATGACCGCCAGCCCATAACCGCCGCCGCCTGACCGGTCAGGCCGTCACCAA
AAATTGGCGATAGCTC
GTCCAAAGATAACATCATCAAGCTGATTCAGCCAGGAAACGTCGACGATCAACTCACCGAAATCTTGCGCAATGGGGCGCGTGCTCTGTTGGCCCAGGCG
GTCGAGGCCGAGGTCGCGGACTTTCTCGGCAAGCATGCCGATTTGAAGACCGCGGACGGCCACCAGCGCGTCGTGCGCCACGGTCACCTGCCGGAACGCG
AGGTGATGACCGGTATTGGTCCGGTCGCCGTCCGCCAGCCGCGTGTACGCGATCGCGAGGCGGACGCCGCCGATCCCGACCGCATCCGGTTCTCTCCGTC
GACCTGCCGCCCTACATGCGCCGGTCGAAGTCGATCGAGACGCTGCTGCCGATCCTTTACCTGAAGGGTATCTCGACCGGCGACTTCTCCGAGGCGCTGG
CGGCGCTGCTCGGCAAGGATGCTGTCGGGTTGTCAGCATCCGCCATCGGCCGCCTGAAGGACGGCTGGCTCGACGAGCACACCGCGTGGCAGAAGCGCGA
TCTGTCGGTGAAGCGCTACGTCTACATCTGGGCCGATGGCATCCATCTCCAGGCGCGCCTCGAAGACGAAAAGCAGTGCATCCTGGTGCTGATCGGCGCG
ACGCCGGAAGGCCGCAAGGAACTGGTCGGCTTCACCGATGGTGCCCGCGAGAGCGCGCAGGACTGGCGCGATCTGCTGCTCGACCTGAAGCGGCGCGGGC
TCGACGTGCCGCCGCAGCTCGCCATCGCCGATGGCGCGCTCGGGTTCTGGAAGGCCGCCGGTGAGGTCTGGCCGAAAACGCGCGAGCAGCGCTGTTGGGT
GCACAAGACCGCGAACGTGCTCGCCAAGTTGCCGAAGAGCCAGCAGCCGAAGGCCAAACGCGCACTGCAGGAGATCTGGATGGCCGAAACCAAGGCCGCC
GCCGAGCTGGCGTTCGACGCCTTCATCGAGAGCTACACGCCCAAATACGAGAAGGCGGCCGACTGCCTGAGCAAGGACCGGGACACGCTACTGGCGTTCT
ACGACTTCCCGGCCGAGCACTGGAAACACCTGCGGACGACCAATCCCATTGAAAGCACCTTCGCTACCGTGCGCCACCGCACGATCCGATCGAAGGGGTG
CCTGTCCAACAGGACGGCGCTCGCGATGGTCTTCAAACTGCTCGAGGCCGCGCAGAAAAGCTGGCGTCGTCTCGATGGCCACAACCAGTTGCCAAAACTC
GTTCTCGGTGTGACATTCAACGACGGGATCGAGGTCATCGCCAAACCGAATGACCGCCAGCCCATAACCGCCGCCGCCTGACCGGTCAGGCCGTCACCAA
AAATTGGCGATAGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1283 bp | 427 aa | 99 | 1381 | + | No |
Chemistry : DDE
ORF sequence :
VSKDNIIKLIQPGNVDDQLTEILRNGARALLAQAVEAEVADFLGKHADLKTADGHQRVVRHGHLPEREVMTGIGPVAVRQPRVRDREADAADPDRIRFSP
STLPPYMRRSKSIETLLPILYLKGISTGDFSEALAALLGKDAVGLSASAIGRLKDGWLDEHTAWQKRDLSVKRYVYIWADGIHLQARLEDEKQCILVLIG
ATPEGRKELVGFTDGARESAQDWRDLLLDLKRRGLDVPPQLAIADGALGFWKAAGEVWPKTREQRCWVHKTANVLAKLPKSQQPKAKRALQEIWMAETKA
AAELAFDAFIESYTPKYEKAADCLSKDRDTLLAFYDFPAEHWKHLRTTNPIESTFATVRHRTIRSKGCLSNRTALAMVFKLLEAAQKSWRRLDGHNQLPK
LVLGVTFNDGIEVIAKPNDRQPITAAA
STLPPYMRRSKSIETLLPILYLKGISTGDFSEALAALLGKDAVGLSASAIGRLKDGWLDEHTAWQKRDLSVKRYVYIWADGIHLQARLEDEKQCILVLIG
ATPEGRKELVGFTDGARESAQDWRDLLLDLKRRGLDVPPQLAIADGALGFWKAAGEVWPKTREQRCWVHKTANVLAKLPKSQQPKAKRALQEIWMAETKA
AAELAFDAFIESYTPKYEKAADCLSKDRDTLLAFYDFPAEHWKHLRTTNPIESTFATVRHRTIRSKGCLSNRTALAMVFKLLEAAQKSWRRLDGHNQLPK
LVLGVTFNDGIEVIAKPNDRQPITAAA
Blast result :
Comments
ISMdi13 is 76% aa similar to ISMex3. There is a ponctual mutation in the sequence. The transposase is reconstructed in silico : join(99-404;404-1381).
References
[1] Stephane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources.(2009) PLoS ONE Submitted.