ISMdi28
- Family IS701
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Methylobacterium dichloromethanicum | Methylobacterium dichloromethanicum DM4 |
DNA section
IS Length : 1410 bp
Ends
IR Length : 19
IRL : TAGTACTACAGCCGGGTTTGTGCGTTGTCATGGTGGAGGTGTGCCATGAC
IRR : TAGTACTACAGCCGGGTTTTGGTTGGCTTACGTGTTTTGGTTGGTCGTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATTCTGTAGC | AAAAGCACGC | 0 |
DNA sequence
TAGTACTACAGCCGGGTTTGTGCGTTGTCATGGTGGAGGTGTGCCATGACGAGGGTGACGCGAGCGGATGTGGCGGACTGGGCGCAGGGCCTCGAAGAGG
TTCTGGAGCGGATCGCCGTCCGCTTTGGGCGGGCCGAGCCGCGTCGGCGGGCGGGGGCCTATCTTCGGGGTCTGCTGGCACCGGTGGAGCGCAAGAACGG
CTGGCAACTGGCGGAGGCGGCGGGCGACGCGAGCCCGGACGGGGTGCAGGAGTTCCTGAGCCGCGTGCGCTGGGATGCGGATGCCGTGCGCGACGACCTG
CAGGGCTACGTGGCCGAGCATCTGGGCGATCCGAACGCGGTGCTGGTGCTCGACGAGACGGGCTTCCTGAAGAAGGGGGTCAATTCGGCCGGCGTACAGC
GCCAGTACACCGGCACGGCCGGGCGGATCGAGAACGCGCAGGTCGGGGTGTTCCTCGGCTATGCCGGGCGCCACGGCCACGCGCTGATCGACCGGGCGCT
GTACCTGCCCAGGTCGTGGACGGACGACCGCGCACGCTGCCGGGCCGCGCATGTGCCCGATGACGTGCCCTTCGCGACCAAGCCGGCGCTGGGCCTTGCC
ATGCTGGAACGGGCGCGCGCGGCCAAACTGCCGTTTGCCTGGATCGCGGGCGACAGCGTCTACGGAGGCGACCGCGCCATCCGCCGCTGGGCGGAAGATC
ACCGGATCGGCTACGTGCTGACGGTCACGTCGGGCCAGCGGCTGGCCATGCGCCCGGTCGCGGAGTGGTTGGCCGATCAGGTCGAGGCGCGGCCCGAGGA
CGCCCCGTCCGTCTGGCAGCGCCTGAGCGCGGGCGACGGCGCCAAGGGGCCGCGCCTCTACGACTGGGCCTGTCTGCCCTATCGCGGCGCGGCACCCGGC
TTCCAGTGCGCGCTTCTGGTACGCCGTTCCCTGGCCGATCCGGACGAGACGACCTTCTACCTGACCCACGCACCGACCGGCACGCCGCTCGCCGACCTCG
TGCGGATCGCAGGCCAGCGTTGGACCATCGAGAGCAACTTCGAGCAGGCCAAGGGTGAGGTCGGGCTCGACCACTACGAGGTCCGCTCGTATCCCGGCTG
GCACCGGCACGTCACCCTGGCGATGCTCGCCCACGCCTACCTCGCCGTCCTGCGCAGGACGGCCATCGGGGGGCGGGGTCACCACGGACCGCGCCCTCGA
CCTCCTGCCGCTGACCGTGCCCGAGATCCGGCATCTGCTGGCCGCTCTCGTCGGCCTGCCTCCGCCCGACACCGCCGTGGTCCTGCGCTGGTCCGTCTGG
CGAAGGCGCCATCAGCAGCGGGCAAGACGCGCTCATTGGCACCGTCGGACCCGAATGCCCAAACGACCAACCAAAACACGTAAGCCAACCAAAACCCGGC
TGTAGTACTA
TTCTGGAGCGGATCGCCGTCCGCTTTGGGCGGGCCGAGCCGCGTCGGCGGGCGGGGGCCTATCTTCGGGGTCTGCTGGCACCGGTGGAGCGCAAGAACGG
CTGGCAACTGGCGGAGGCGGCGGGCGACGCGAGCCCGGACGGGGTGCAGGAGTTCCTGAGCCGCGTGCGCTGGGATGCGGATGCCGTGCGCGACGACCTG
CAGGGCTACGTGGCCGAGCATCTGGGCGATCCGAACGCGGTGCTGGTGCTCGACGAGACGGGCTTCCTGAAGAAGGGGGTCAATTCGGCCGGCGTACAGC
GCCAGTACACCGGCACGGCCGGGCGGATCGAGAACGCGCAGGTCGGGGTGTTCCTCGGCTATGCCGGGCGCCACGGCCACGCGCTGATCGACCGGGCGCT
GTACCTGCCCAGGTCGTGGACGGACGACCGCGCACGCTGCCGGGCCGCGCATGTGCCCGATGACGTGCCCTTCGCGACCAAGCCGGCGCTGGGCCTTGCC
ATGCTGGAACGGGCGCGCGCGGCCAAACTGCCGTTTGCCTGGATCGCGGGCGACAGCGTCTACGGAGGCGACCGCGCCATCCGCCGCTGGGCGGAAGATC
ACCGGATCGGCTACGTGCTGACGGTCACGTCGGGCCAGCGGCTGGCCATGCGCCCGGTCGCGGAGTGGTTGGCCGATCAGGTCGAGGCGCGGCCCGAGGA
CGCCCCGTCCGTCTGGCAGCGCCTGAGCGCGGGCGACGGCGCCAAGGGGCCGCGCCTCTACGACTGGGCCTGTCTGCCCTATCGCGGCGCGGCACCCGGC
TTCCAGTGCGCGCTTCTGGTACGCCGTTCCCTGGCCGATCCGGACGAGACGACCTTCTACCTGACCCACGCACCGACCGGCACGCCGCTCGCCGACCTCG
TGCGGATCGCAGGCCAGCGTTGGACCATCGAGAGCAACTTCGAGCAGGCCAAGGGTGAGGTCGGGCTCGACCACTACGAGGTCCGCTCGTATCCCGGCTG
GCACCGGCACGTCACCCTGGCGATGCTCGCCCACGCCTACCTCGCCGTCCTGCGCAGGACGGCCATCGGGGGGCGGGGTCACCACGGACCGCGCCCTCGA
CCTCCTGCCGCTGACCGTGCCCGAGATCCGGCATCTGCTGGCCGCTCTCGTCGGCCTGCCTCCGCCCGACACCGCCGTGGTCCTGCGCTGGTCCGTCTGG
CGAAGGCGCCATCAGCAGCGGGCAAGACGCGCTCATTGGCACCGTCGGACCCGAATGCCCAAACGACCAACCAAAACACGTAAGCCAACCAAAACCCGGC
TGTAGTACTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1359 bp | 452 aa | 25 | 1383 | + | No |
Chemistry : DDE
ORF sequence :
LSWWRCAMTRVTRADVADWAQGLEEVLERIAVRFGRAEPRRRAGAYLRGLLAPVERKNGWQLAEAAGDASPDGVQEFLSRVRWDADAVRDDLQGYVAEHL
GDPNAVLVLDETGFLKKGVNSAGVQRQYTGTAGRIENAQVGVFLGYAGRHGHALIDRALYLPRSWTDDRARCRAAHVPDDVPFATKPALGLAMLERARAA
KLPFAWIAGDSVYGGDRAIRRWAEDHRIGYVLTVTSGQRLAMRPVAEWLADQVEARPEDAPSVWQRLSAGDGAKGPRLYDWACLPYRGAAPGFQCALLVR
RSLADPDETTFYLTHAPTGTPLADLVRIAGQRWTIESNFEQAKGEVGLDHYEVRSYPGWHRHVTLAMLAHAYLAVLRRTAIGGRGHHGPRPRPPAADRAR
DPASAGRSRRPASARHRRGPALVRLAKAPSAAGKTRSLAPSDPNAQTTNQNT
GDPNAVLVLDETGFLKKGVNSAGVQRQYTGTAGRIENAQVGVFLGYAGRHGHALIDRALYLPRSWTDDRARCRAAHVPDDVPFATKPALGLAMLERARAA
KLPFAWIAGDSVYGGDRAIRRWAEDHRIGYVLTVTSGQRLAMRPVAEWLADQVEARPEDAPSVWQRLSAGDGAKGPRLYDWACLPYRGAAPGFQCALLVR
RSLADPDETTFYLTHAPTGTPLADLVRIAGQRWTIESNFEQAKGEVGLDHYEVRSYPGWHRHVTLAMLAHAYLAVLRRTAIGGRGHHGPRPRPPAADRAR
DPASAGRSRRPASARHRRGPALVRLAKAPSAAGKTRSLAPSDPNAQTTNQNT
Blast result :
Comments
ISMdi28 is 67% aa similar to ISAzo35.
References
1] Stephane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. (2009) PLoS ONE Submitted.